Rh5CG169700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010200
Physical Location & Seq
Reverse (-)
15810457 .. 15817407
6951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG169700.1

Sequence Viewer

Length: 390 bp
ATGGCGAAGTCGGTGAGATGCAAGAGAGAGAAAAGGCTTCGGGCTATTCCCAAAGCGATGGAAGAGCCCTACTATGAGAAGAAAGACAAGGCCAAGCTCGCCGTCCAAGAAGCAGCCCTCGCCGCCCTTAAGCATCCTATAAAGCCCTCTTGTAAGGCCTCCTCTTCTATGGAGATCGTCCCTGTCAACACCTCAACGCCTTCTGAAAATGCCATGGATGTGGAGATGGCTGATGGCAGTCAAACAAAGAGTTCATTAAAACCTTTTGGTGGGGTGGGTAAGAAATCCCAACAGGTGTTCAAGCAGGGCAAGAGAAGCGTCATGGCAAGATCAAGGGCGGAAAGGTTAAGAGGCGTCATATCTGAGAGACTGATGTGTCTTGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.2

Weight (kDa)

10.06

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30880 AT1G30880
fragaria_vesca FvH4_3g13200
malus_domestica MD10G1226000.v1.1
prunus_persica Prupe.4G119300_v2.0.a1
pyrus_communis pycom05g22080 pycom10g18990
rosa_chinensis RchiOBHm_Chr5g0021541
rosa_laevigata RLG00000032613
rosa_multiflora Rmu_sc0002052.1_g000012 Rmu_sc0023070.1_g000004
rosa_roxburghii Rroxscaffold_1G00057110
rosa_rugosa Rorug02G0284200 Rorug05G0067100
rosa_samantha Rh5AG156400 Rh5BG155900 Rh5CG169700 Rh5CG170100 Rh5DG156200 Rh5DG156300
rosa_wichuraiana Rw5G013920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 375
AciI CCGC 2 cut(s) 123, 338
AcyI GRCGYC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 269
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 361
AoxI GGCC 2 cut(s) 90, 156
ApeKI GCWGC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 25
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 125
BccI CCATC 3 cut(s) 52, 220, 227
BceAI ACGGC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 361
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 114, 123
BlsI GCNGC 2 cut(s) 115, 124
BmsI GCATC 2 cut(s) 8, 142
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 133, 223
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 2 cut(s) 92, 158
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 361
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 92, 158
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 174, 329
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 2 cut(s) 123, 338
BspANI GGCC 2 cut(s) 92, 158
BspCNI CTCAG 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 174, 329
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 213
Bst6I CTCTTC 2 cut(s) 57, 169
BstACI GRCGYC 1 cut(s) 354
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 363, 387
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 133, 223
BstKTI GATC 2 cut(s) 177, 332
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 174, 329
BstMWI GCNNNNNNNGC 4 cut(s) 98, 119, 122, 315
BstV1I GCAGC 1 cut(s) 125
BstXI CCANNNNNNTGG 2 cut(s) 58, 220
BsuRI GGCC 2 cut(s) 92, 158
BtgI CCRYGG 1 cut(s) 213
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 2 cut(s) 133, 223
Cac8I GCNNGC 1 cut(s) 99
CseI GACGC 2 cut(s) 307, 343
CviAII CATG 2 cut(s) 214, 322
CviJI RGCY 9 cut(s) 37, 44, 67, 92, 97, 116, 145, 158, 230
CviKI_1 RGCY 9 cut(s) 37, 44, 67, 92, 97, 116, 145, 158, 230
DdeI CTNAG 2 cut(s) 363, 387
DpnI GATC 2 cut(s) 176, 331
DpnII GATC 2 cut(s) 174, 329
DrdI GACNNNNNNGTC 1 cut(s) 375
DseDI GACNNNNNNGTC 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 57, 169
EarI CTCTTC 2 cut(s) 57, 169
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 217, 325
FaiI YATR 6 cut(s) 75, 140, 170, 215, 323, 359
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 213, 321
Fnu4HI GCNGC 2 cut(s) 114, 123
FokI GGATG 2 cut(s) 120, 230
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 114, 123
GluI GCNGC 2 cut(s) 114, 123
HaeIII GGCC 2 cut(s) 92, 158
HgaI GACGC 2 cut(s) 307, 343
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 2 cut(s) 217, 325
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 205, 364
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 21, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 119, 122, 315
HpyF3I CTNAG 2 cut(s) 363, 387
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 2 cut(s) 217, 325
Kzo9I GATC 2 cut(s) 174, 329
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 195, 278, 290
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 2 cut(s) 8, 142
MalI GATC 2 cut(s) 176, 331
MboI GATC 2 cut(s) 174, 329
MboII GAAGA 3 cut(s) 74, 91, 156
MhlI GDGCHC 1 cut(s) 69
MnlI CCTC 6 cut(s) 128, 157, 169, 172, 202, 344
MseI TTAA 3 cut(s) 129, 257, 347
MslI CAYNNNNRTG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 128
MwoI GCNNNNNNNGC 4 cut(s) 98, 119, 122, 315
NcoI CCATGG 1 cut(s) 213
NdeII GATC 2 cut(s) 174, 329
NlaIII CATG 2 cut(s) 217, 325
PceI AGGCCT 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 115, 124
RseI CAYNNNNRTG 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 129, 257, 347
SatI GCNGC 2 cut(s) 114, 123
Sau3AI GATC 2 cut(s) 174, 329
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 99, 194, 265, 297, 347
SfaNI GCATC 2 cut(s) 8, 142
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 2 cut(s) 123, 338
StuI AGGCCT 1 cut(s) 158
StyI CCWWGG 1 cut(s) 213
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 129, 257, 347
Tru9I TTAA 3 cut(s) 129, 257, 347
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 243
Vha464I CTTAAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.