pycom05g22080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010200
Physical Location & Seq
Forward (+)
24601628 .. 24603313
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22080.2

Sequence Viewer

Length: 444 bp
ATGCATTCAGGACTGGTTCTGCCCTTTCGCGTTTCGCAAAACCCTAAACCCAAAAGCAAGAGAGGCGAAGGCGGTGCGGAAACAATGGCGAAGTCGATGAGATGCAAGAGAGAAAAGAGGCTGAGAGCCATTCGCAGAGAGATGGTGGAGCCCTACTACGACAAGAAAGACGAAGCTAAGCTCGCTGCCCAGGAAGCTGCCCTCGCTGCCCCTAAGCTTCCCGTACGCCCGCCTCCTAAATCCATCTCTGCTATGGAGGTCACCACCACTAACGGCGCCTCCGCCTCCACGAGCAACATGGATGTGGACATGGATGCTGTCAACGAAAGATTAGCTGCATTGAAGCCTGCTGGTGGGGTAAGTAAGAAATCCAAAAGGGTGTTCAAGGTGGGCAAAAGAAGGCGCCACGGCAAGGGAGGAAAGGTTAAGAGGCGTCATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.19

Weight (kDa)

10.81

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30880 AT1G30880
fragaria_vesca FvH4_3g13200
malus_domestica MD10G1226000.v1.1
prunus_persica Prupe.4G119300_v2.0.a1
pyrus_communis pycom05g22080 pycom10g18990
rosa_chinensis RchiOBHm_Chr5g0021541
rosa_laevigata RLG00000032613
rosa_multiflora Rmu_sc0002052.1_g000012 Rmu_sc0023070.1_g000004
rosa_roxburghii Rroxscaffold_1G00057110
rosa_rugosa Rorug02G0284200 Rorug05G0067100
rosa_samantha Rh5AG156400 Rh5BG155900 Rh5CG169700 Rh5CG170100 Rh5DG156200 Rh5DG156300
rosa_wichuraiana Rw5G013920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 275, 402
AccII CGCG 1 cut(s) 30
AciI CCGC 4 cut(s) 72, 77, 230, 282
AcyI GRCGYC 3 cut(s) 276, 403, 433
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 353, 412
AgsI TTSAA 2 cut(s) 343, 385
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 5 cut(s) 176, 181, 197, 217, 335
AluI AGCT 5 cut(s) 176, 181, 197, 217, 335
ApeKI GCWGC 4 cut(s) 185, 197, 206, 335
AspLEI GCGC 2 cut(s) 278, 405
AsuHPI GGTGA 1 cut(s) 253
BanI GGYRCC 2 cut(s) 275, 402
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 1 cut(s) 289
BbvI GCAGC 4 cut(s) 172, 184, 193, 322
BccI CCATC 2 cut(s) 136, 251
BceAI ACGGC 2 cut(s) 289, 424
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 1 cut(s) 191
BfoI RGCGCY 2 cut(s) 279, 406
BisI GCNGC 4 cut(s) 186, 198, 207, 336
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 4 cut(s) 187, 199, 208, 337
Bme1390I CCNGG 1 cut(s) 191
BmiI GGNNCC 3 cut(s) 150, 277, 404
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 92, 304
Bpu10I CCTNAGC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 177
BsaHI GRCGYC 3 cut(s) 276, 403, 433
BsaJI CCNNGG 2 cut(s) 189, 406
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 408, 438
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 412
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 189, 406
BseGI GGATG 2 cut(s) 307, 319
BseLI CCNNNNNNNGG 2 cut(s) 353, 412
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 4 cut(s) 172, 184, 193, 322
Bsh1236I CGCG 1 cut(s) 30
BshNI GGYRCC 2 cut(s) 275, 402
BsiWI CGTACG 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 353, 412
BsmI GAATGC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 153
Bsp1720I GCTNAGC 1 cut(s) 177
BspACI CCGC 4 cut(s) 72, 77, 230, 282
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 150, 277, 404
BspT107I GGYRCC 2 cut(s) 275, 402
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 189, 406
BssNI GRCGYC 3 cut(s) 276, 403, 433
BssSI CACGAG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 191
BstACI GRCGYC 3 cut(s) 276, 403, 433
BstC8I GCNNGC 3 cut(s) 183, 230, 348
BstDEI CTNAG 3 cut(s) 122, 177, 213
BstDSI CCRYGG 1 cut(s) 406
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 2 cut(s) 307, 319
BstFNI CGCG 1 cut(s) 30
BstH2I RGCGCY 2 cut(s) 279, 406
BstHHI GCGC 2 cut(s) 278, 405
BstMWI GCNNNNNNNGC 5 cut(s) 63, 182, 194, 203, 206
BstNI CCWGG 1 cut(s) 191
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 4 cut(s) 172, 184, 193, 322
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 307, 319
Cac8I GCNNGC 3 cut(s) 183, 230, 348
CfoI GCGC 2 cut(s) 278, 405
CseI GACGC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 298, 310
CviJI RGCY 9 cut(s) 121, 128, 151, 176, 181, 197, 217, 335, 346
CviKI_1 RGCY 9 cut(s) 121, 128, 151, 176, 181, 197, 217, 335, 346
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 3 cut(s) 122, 177, 213
DinI GGCGCC 2 cut(s) 277, 404
EciI GGCGGA 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 153
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 153
EgeI GGCGCC 2 cut(s) 277, 404
EheI GGCGCC 2 cut(s) 277, 404
FaeI CATG 2 cut(s) 301, 313
FaiI YATR 4 cut(s) 254, 299, 311, 438
FatI CATG 2 cut(s) 297, 309
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 186, 198, 207, 336
FokI GGATG 2 cut(s) 314, 326
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 186, 198, 207, 336
GlaI GCGC 2 cut(s) 277, 404
GluI GCNGC 4 cut(s) 186, 198, 207, 336
HaeII RGCGCY 2 cut(s) 279, 406
HgaI GACGC 1 cut(s) 422
HhaI GCGC 2 cut(s) 278, 405
Hin1I GRCGYC 3 cut(s) 276, 403, 433
Hin1II CATG 2 cut(s) 301, 313
Hin6I GCGC 2 cut(s) 276, 403
HinP1I GCGC 2 cut(s) 276, 403
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 215
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 307, 322
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 2 cut(s) 307, 322
HpyAV CCTTC 2 cut(s) 62, 393
HpyCH4V TGCA 3 cut(s) 4, 105, 338
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 182, 194, 203, 206
HpyF3I CTNAG 3 cut(s) 122, 177, 213
Hsp92I GRCGYC 3 cut(s) 276, 403, 433
Hsp92II CATG 2 cut(s) 301, 313
HspAI GCGC 2 cut(s) 276, 403
KasI GGCGCC 2 cut(s) 275, 402
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 4 cut(s) 176, 203, 336, 360
Lsp1109I GCAGC 4 cut(s) 172, 184, 193, 322
LweI GCATC 2 cut(s) 92, 304
MaeIII GTNAC 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 153
Mly113I GGCGCC 2 cut(s) 276, 403
MnlI CCTC 9 cut(s) 56, 111, 212, 243, 250, 289, 295, 410, 423
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 426, 442
MslI CAYNNNNRTG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 5 cut(s) 63, 182, 194, 203, 206
NarI GGCGCC 2 cut(s) 276, 403
NlaIII CATG 2 cut(s) 301, 313
NlaIV GGNNCC 3 cut(s) 150, 277, 404
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 4
Pfl23II CGTACG 1 cut(s) 223
PkrI GCNGC 4 cut(s) 187, 199, 208, 337
PluTI GGCGCC 2 cut(s) 279, 406
Psp6I CCWGG 1 cut(s) 189
PspEI GGTNACC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 189
PspLI CGTACG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 150, 277, 404
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 426, 442
SatI GCNGC 4 cut(s) 186, 198, 207, 336
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 153
SetI ASST 8 cut(s) 178, 183, 199, 219, 261, 337, 390, 426
SfaNI GCATC 2 cut(s) 92, 304
SfoI GGCGCC 2 cut(s) 277, 404
SmiMI CAYNNNNRTG 1 cut(s) 302
SsiI CCGC 4 cut(s) 72, 77, 230, 282
SspDI GGCGCC 2 cut(s) 275, 402
StyD4I CCNGG 1 cut(s) 189
TaqI TCGA 1 cut(s) 95
Tru1I TTAA 2 cut(s) 426, 442
Tru9I TTAA 2 cut(s) 426, 442
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 4 cut(s) 185, 197, 206, 335
Tsp45I GTSAC 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 2 cut(s) 250, 295
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.