Prupe.4G119300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
6462771 .. 6464435
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G119300.1

Sequence Viewer

Length: 360 bp
ATGGCGAAGTCGATGAGATGTAAGAGAGAGAAGAGGCTGAGAGCCATTCGGAGAGAAATGGTGGAGCCCTACTACGACAAGAAAGACGAAGCTAAGCTCGCTGCCCAGGAAGCAGCCCTCGCTGCCCCTAAGCTGCCTGTACGGCCCCCTCCTAAATCCGCGTCTGCTATGGAGGTCACTACAACTGACAGCACTACGGCCCCAACAAGCAACATGGATGTGGATATGGTCGGTGGCAATCAAAGAATGAACTTTTTGAAGCCTGGTGGTGGGATAGGCAAGAAATCCAAGAGGGTATTTAAGGTGGGTAAAAGAAGGCGTCAAGGCAAGGGGGGCAAGGTTAAGAAGCGTCATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

10.8

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010200)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 2 cut(s) 105, 262
AluBI AGCT 3 cut(s) 92, 97, 133
AluI AGCT 3 cut(s) 92, 97, 133
AoxI GGCC 2 cut(s) 143, 198
ApeKI GCWGC 4 cut(s) 101, 113, 122, 133
AspS9I GGNCC 2 cut(s) 144, 199
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 88, 109, 120, 125
BceAI ACGGC 2 cut(s) 158, 213
BciT130I CCWGG 2 cut(s) 107, 264
BglI GCCNNNNNGGC 1 cut(s) 142
BisI GCNGC 4 cut(s) 102, 114, 123, 134
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 4 cut(s) 103, 115, 124, 135
Bme1390I CCNGG 2 cut(s) 107, 264
BmgT120I GGNCC 2 cut(s) 144, 199
BmiI GGNNCC 3 cut(s) 66, 146, 201
BmrFI CCNGG 2 cut(s) 107, 264
Bpu10I CCTNAGC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 107, 264
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 29
BseXI GCAGC 4 cut(s) 88, 109, 120, 125
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 145, 200
BslI CCNNNNNNNGG 1 cut(s) 269
BsnI GGCC 2 cut(s) 145, 200
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 1 cut(s) 159
BspANI GGCC 2 cut(s) 145, 200
BspCNI CTCAG 1 cut(s) 30
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 3 cut(s) 66, 146, 201
BssECI CCNNGG 1 cut(s) 105
BssNI GRCGYC 1 cut(s) 319
Bst2UI CCWGG 2 cut(s) 107, 264
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 38, 93, 129
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 6 cut(s) 98, 110, 119, 122, 142, 333
BstNI CCWGG 2 cut(s) 107, 264
BstSCI CCNGG 2 cut(s) 105, 262
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 4 cut(s) 88, 109, 120, 125
BsuRI GGCC 2 cut(s) 145, 200
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 144, 199
CseI GACGC 3 cut(s) 150, 308, 338
Csp6I GTAC 1 cut(s) 140
CviAII CATG 1 cut(s) 214
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 3 cut(s) 38, 93, 129
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 105, 262
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 170, 215, 227, 354
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 102, 114, 123, 134
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 102, 114, 123, 134
GluI GCNGC 4 cut(s) 102, 114, 123, 134
HaeIII GGCC 2 cut(s) 145, 200
HgaI GACGC 3 cut(s) 150, 308, 338
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 110, 119, 122, 142, 333
HpyF3I CTNAG 3 cut(s) 38, 93, 129
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 1 cut(s) 217
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 92, 119, 150, 249, 276
Lsp1109I GCAGC 4 cut(s) 88, 109, 120, 125
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 69
MnlI CCTC 5 cut(s) 27, 128, 159, 166, 285
MseI TTAA 3 cut(s) 300, 342, 358
MslI CAYNNNNRTG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 107, 264
MvaI CCWGG 2 cut(s) 107, 264
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 6 cut(s) 98, 110, 119, 122, 142, 333
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 3 cut(s) 66, 146, 201
NmuCI GTSAC 1 cut(s) 175
PkrI GCNGC 4 cut(s) 103, 115, 124, 135
Psp6I CCWGG 2 cut(s) 105, 262
PspGI CCWGG 2 cut(s) 105, 262
PspN4I GGNNCC 3 cut(s) 66, 146, 201
PspPI GGNCC 2 cut(s) 144, 199
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 300, 342, 358
SatI GCNGC 4 cut(s) 102, 114, 123, 134
Sau96I GGNCC 2 cut(s) 144, 199
ScrFI CCNGG 2 cut(s) 107, 264
SduI GDGCHC 1 cut(s) 69
SetI ASST 6 cut(s) 94, 99, 135, 177, 306, 342
SmiMI CAYNNNNRTG 1 cut(s) 218
SsiI CCGC 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 105, 262
TaqI TCGA 1 cut(s) 11
Tru1I TTAA 3 cut(s) 300, 342, 358
Tru9I TTAA 3 cut(s) 300, 342, 358
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 4 cut(s) 101, 113, 122, 133
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.