Rmu_sc0023070.1_g000004

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023070.1
Physical Location & Seq
Reverse (-)
10731 .. 11815
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023070.1_g000004.1.cds

Sequence Viewer

Length: 351 bp
atggcgaagtcgatgagatgcaagagagagaagaggcttcgagctattcggagagagatggtagagccctactacgagaagaaagacgaggccaagctcgctgcccaagaggctgccctcgccgcccctaagctgcccgtaaagccctcttctatggagatcgcccccgtcaacacctcaacgccttctgaaaacgccatggatgtggagatggctgatggcagtcagacaaagagttcattaaagccttttggtggggtgggtaagaaatcccaacgggtgttcaaggtgggcaagagaaggcgtcatggcaagggcaagggcggaaaggttaagaggcgtcatatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.94

Weight (kDa)

10.55

Isoelectric Point (pI)

64.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010200)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 123, 324
AcyI GRCGYC 2 cut(s) 304, 340
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 3 cut(s) 44, 97, 133
AluI AGCT 3 cut(s) 44, 97, 133
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 101, 113, 133
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 88, 100, 120
BccI CCATC 3 cut(s) 52, 205, 212
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 4 cut(s) 102, 114, 123, 134
BlsI GCNGC 4 cut(s) 103, 115, 124, 135
BmsI GCATC 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 129
BsaHI GRCGYC 2 cut(s) 304, 340
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 254
BseXI GCAGC 3 cut(s) 88, 100, 120
BshFI GGCC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 123, 324
BspANI GGCC 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 159
BssNI GRCGYC 2 cut(s) 304, 340
BssT1I CCWWGG 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 26, 154
BstACI GRCGYC 2 cut(s) 304, 340
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
BstV1I GCAGC 3 cut(s) 88, 100, 120
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuRI GGCC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 99
CseI GACGC 2 cut(s) 293, 329
CviAII CATG 2 cut(s) 199, 308
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 26, 154
EarI CTCTTC 2 cut(s) 26, 154
EciI GGCGGA 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 202, 311
FaiI YATR 4 cut(s) 155, 200, 309, 345
FatI CATG 2 cut(s) 198, 307
Fnu4HI GCNGC 4 cut(s) 102, 114, 123, 134
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 102, 114, 123, 134
GluI GCNGC 4 cut(s) 102, 114, 123, 134
HaeIII GGCC 1 cut(s) 92
HgaI GACGC 2 cut(s) 293, 329
Hin1I GRCGYC 2 cut(s) 304, 340
Hin1II CATG 2 cut(s) 202, 311
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 51, 190, 228
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 2 cut(s) 195, 294
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
HpyF3I CTNAG 1 cut(s) 129
Hsp92I GRCGYC 2 cut(s) 304, 340
Hsp92II CATG 2 cut(s) 202, 311
Kzo9I GATC 1 cut(s) 159
Lsp1109I GCAGC 3 cut(s) 88, 100, 120
LweI GCATC 1 cut(s) 8
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 3 cut(s) 43, 91, 141
MhlI GDGCHC 1 cut(s) 69
MnlI CCTC 7 cut(s) 27, 82, 103, 128, 157, 187, 330
MseI TTAA 2 cut(s) 242, 333
MslI CAYNNNNRTG 1 cut(s) 203
MwoI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
NcoI CCATGG 1 cut(s) 198
NdeII GATC 1 cut(s) 159
NlaIII CATG 2 cut(s) 202, 311
PkrI GCNGC 4 cut(s) 103, 115, 124, 135
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 2 cut(s) 242, 333
SatI GCNGC 4 cut(s) 102, 114, 123, 134
Sau3AI GATC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 69
SetI ASST 6 cut(s) 46, 99, 135, 179, 291, 333
SfaNI GCATC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 203
SsiI CCGC 2 cut(s) 123, 324
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 2 cut(s) 11, 40
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 242, 333
Tru9I TTAA 2 cut(s) 242, 333
TseI GCWGC 3 cut(s) 101, 113, 133
TspDTI ATGAA 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.