pycom10g18990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010200
Physical Location & Seq
Forward (+)
22201304 .. 22202798
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18990.1

Sequence Viewer

Length: 360 bp
ATGGCGAAGTCGATGAGATGCAAGAGAGAGAAGAGGCTGAGAGCCATACGGAGAGAGATGGTGGAGCCCTACTACGACAAGAAAGACGAAGCTAAGCTCGCTGCCCAGGAAGCTGCCCTCGCTGCCCCCAAGCTGCCCGTACGGCCCCCGCCTAAATCCACCTCTGCTATGGAGGTCACCACCACTGACGGCGCTTCCGCATCCACAAGCAACATGGATGTGGACATGGATGCTGTCAATGAAAGATTAGCTGCATTGAAGCCTGCTGGTGGGGTAGGCAAGAAATCTAAAAGGGTGTTCAAGGTGGGCAAAAGAAGGCGCCACGGCAAGGGAGGAAAGGTAAAGAGGCGTCATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.16

Weight (kDa)

10.64

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30880 AT1G30880
fragaria_vesca FvH4_3g13200
malus_domestica MD10G1226000.v1.1
prunus_persica Prupe.4G119300_v2.0.a1
pyrus_communis pycom05g22080 pycom10g18990
rosa_chinensis RchiOBHm_Chr5g0021541
rosa_laevigata RLG00000032613
rosa_multiflora Rmu_sc0002052.1_g000012 Rmu_sc0023070.1_g000004
rosa_roxburghii Rroxscaffold_1G00057110
rosa_rugosa Rorug02G0284200 Rorug05G0067100
rosa_samantha Rh5AG156400 Rh5BG155900 Rh5CG169700 Rh5CG170100 Rh5DG156200 Rh5DG156300
rosa_wichuraiana Rw5G013920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 2 cut(s) 149, 198
AcyI GRCGYC 2 cut(s) 319, 349
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 269, 328
AgsI TTSAA 2 cut(s) 259, 301
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 5 cut(s) 92, 97, 113, 133, 251
AluI AGCT 5 cut(s) 92, 97, 113, 133, 251
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 5 cut(s) 101, 113, 122, 133, 251
AspLEI GCGC 2 cut(s) 194, 321
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 5 cut(s) 88, 100, 109, 120, 238
BccI CCATC 1 cut(s) 52
BceAI ACGGC 3 cut(s) 158, 205, 340
BciT130I CCWGG 1 cut(s) 107
BfoI RGCGCY 2 cut(s) 195, 322
BglI GCCNNNNNGGC 1 cut(s) 142
BisI GCNGC 5 cut(s) 102, 114, 123, 134, 252
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 5 cut(s) 103, 115, 124, 135, 253
Bme1390I CCNGG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 3 cut(s) 66, 146, 320
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 3 cut(s) 8, 209, 220
Bpu1102I GCTNAGC 1 cut(s) 93
BsaHI GRCGYC 2 cut(s) 319, 349
BsaJI CCNNGG 2 cut(s) 105, 322
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 328
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 105, 322
BseGI GGATG 3 cut(s) 200, 223, 235
BseLI CCNNNNNNNGG 2 cut(s) 269, 328
BseMII CTCAG 1 cut(s) 29
BseXI GCAGC 5 cut(s) 88, 100, 109, 120, 238
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 318
BsiWI CGTACG 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 269, 328
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 2 cut(s) 149, 198
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 66, 146, 320
BspT107I GGYRCC 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 105, 322
BssNI GRCGYC 2 cut(s) 319, 349
Bst2UI CCWGG 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 2 cut(s) 319, 349
BstC8I GCNNGC 2 cut(s) 99, 264
BstDEI CTNAG 2 cut(s) 38, 93
BstDSI CCRYGG 1 cut(s) 322
BstEII GGTNACC 1 cut(s) 175
BstF5I GGATG 3 cut(s) 200, 223, 235
BstH2I RGCGCY 2 cut(s) 195, 322
BstHHI GCGC 2 cut(s) 194, 321
BstMWI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
BstNI CCWGG 1 cut(s) 107
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 105
BstV1I GCAGC 5 cut(s) 88, 100, 109, 120, 238
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 3 cut(s) 200, 223, 235
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 99, 264
CfoI GCGC 2 cut(s) 194, 321
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 140
CviAII CATG 2 cut(s) 214, 226
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 38, 93
DinI GGCGCC 1 cut(s) 320
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 175
EcoO65I GGTNACC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 69
EgeI GGCGCC 1 cut(s) 320
EheI GGCGCC 1 cut(s) 320
FaeI CATG 2 cut(s) 217, 229
FaiI YATR 5 cut(s) 47, 170, 215, 227, 354
FatI CATG 2 cut(s) 213, 225
FauI CCCGC 1 cut(s) 156
Fnu4HI GCNGC 5 cut(s) 102, 114, 123, 134, 252
FokI GGATG 3 cut(s) 187, 230, 242
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 5 cut(s) 102, 114, 123, 134, 252
GlaI GCGC 2 cut(s) 193, 320
GluI GCNGC 5 cut(s) 102, 114, 123, 134, 252
HaeII RGCGCY 2 cut(s) 195, 322
HaeIII GGCC 1 cut(s) 145
HgaI GACGC 1 cut(s) 338
HhaI GCGC 2 cut(s) 194, 321
Hin1I GRCGYC 2 cut(s) 319, 349
Hin1II CATG 2 cut(s) 217, 229
Hin6I GCGC 2 cut(s) 192, 319
HinP1I GCGC 2 cut(s) 192, 319
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 21, 254
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
HpyF3I CTNAG 2 cut(s) 38, 93
Hsp92I GRCGYC 2 cut(s) 319, 349
Hsp92II CATG 2 cut(s) 217, 229
HspAI GCGC 2 cut(s) 192, 319
KasI GGCGCC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 92, 119, 252, 276
Lsp1109I GCAGC 5 cut(s) 88, 100, 109, 120, 238
LweI GCATC 3 cut(s) 8, 209, 220
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 69
Mly113I GGCGCC 1 cut(s) 319
MnlI CCTC 6 cut(s) 27, 128, 166, 172, 326, 339
MseI TTAA 1 cut(s) 358
MslI CAYNNNNRTG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 5 cut(s) 98, 110, 119, 122, 142
NarI GGCGCC 1 cut(s) 319
NlaIII CATG 2 cut(s) 217, 229
NlaIV GGNNCC 3 cut(s) 66, 146, 320
NmuCI GTSAC 1 cut(s) 175
Pfl23II CGTACG 1 cut(s) 139
PkrI GCNGC 5 cut(s) 103, 115, 124, 135, 253
PluTI GGCGCC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 105
PspEI GGTNACC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 105
PspLI CGTACG 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 66, 146, 320
PspPI GGNCC 1 cut(s) 144
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 5 cut(s) 102, 114, 123, 134, 252
Sau96I GGNCC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 69
SetI ASST 9 cut(s) 94, 99, 115, 135, 164, 177, 253, 306, 342
SfaNI GCATC 3 cut(s) 8, 209, 220
SfoI GGCGCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 218
SsiI CCGC 2 cut(s) 149, 198
SspDI GGCGCC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 105
TaqI TCGA 1 cut(s) 11
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 5 cut(s) 101, 113, 122, 133, 251
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 2 cut(s) 166, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.