Rorug05G0067100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010200
Physical Location & Seq
Forward (+)
5758812 .. 5760248
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0067100.1

Sequence Viewer

Length: 1437 bp
ATGGGGAGTAAAACCCTGTTTAAATGGTCGAAGCAAATTACTACTTCCCAAGTTGGGCAGCTGATAAAAGCTGAGAAGGACCTCCAGAAAGCGCTCATCATATTTGATTCCGCAACAGCTGAGTACACCAATGGTTTTCGGCATGATCATAGCACGTTTGGGATCATGATCTCTAGATTAGTCTCTGCAAACCAGTTCAGGTCTGCGGAGGCGCTGCTTGATAGGATGAAGGAGGAGAAGTGTAGTGTTACGGAAGATATATTCTTGTCTGTTTGTAGAGGGTATGCTAGAGTTCACAGGCCACTGGATTCTGTCAGGGTGTTCGACAAGATGGAGGACTTCCGGTGCAAACCAACTGAAAAGTCTTACATTACGATATTTGGGATTCTTGTTGAAGAAAACCAGTTAAAGGTTGCTTTTAGATTCTACAGGTATATGAGGAAAACGGGCATTCCAGCTAGTGTTGTTTCACTTAATATCCTGATTAAAGCGCTTTGTAAGAACAGCAGTTCCATGGATGCAGCTCTTCGGATACTTCGTGAGATGCCTGATCATGGGTGCACCCCTGATTCATATACATATGGTACTTTGATTAATGGATTGTGCAAGTTAGGAAAGATTGGTGAAGCAAAGGAGCTATTCTGTGTGATGGGAACAAAAGGCTGTTCACCGTCTGTTGTTACGTATACTTGCTTGATACGTGGTTTGTGCCAAAATAACAATTTGGATGAAGCTGTGGAATTGTTTGAAGACATGAATGACAAAGGTATCGCCCCAAATGTGTTTACTTACAGCTCTTTGATGGATGGTTTTTGCAAGGGTGGACGTTCTTCAGAAGCAATGGAACTATTAGACTTAATGATTAGTAAACACCATTTGCCCAACATGGTTACTTATAGTACTTTGCTTCATGGACTCTGTGAAGAAGGGAAGCTTCGAGAGGCTTTGGAGATTCTGGACAAAATGAAGCTGCAGGGCTTGAAACCAGATGCAGGGCAGTATGGGAAAATAATAACTGGCTTCTGCAATGTTTCCAAGTTCCAAGAAGCAGCAAACTTTCTTGATGAGATGGTCCTTGGTGGGATTTCACCCAACAGATTAACCTGGAGCCTTCATGTTAGGATCCATAATGCAGTGGTTCAAGGCTTGTGCAGTAGTGCCAACCTAACTCGAGCTTTTCAGTTGTATCTTAGCATGCGCACCAGGGGTTTCTCAATTGATTTGGAAACTTTTGATACTCTAGTGAAATGCATTTCTAAGAAAGGTGACCTGCACAAAGCTTATCGAATTGTTGATGAGATGGTGCTTGATGGATGCATTCCAGACTATGGAATTTGGAATGCTGTGGTCAAAGGGTTTTGGGATCGCACAAAGGTGCGTGAACCTGCCGAGTTGTTGCAAGCTGAGCTGATGAGCGAATTAGCTGATGAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

478

Amino Acids

53.75

Weight (kDa)

7.47

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 104 - 213 1.1e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 122 - 167 9.4e-09 PPR repeat family
PPR_2 PF13041 154 - 203 3.7e-16 PPR repeat family
PPR_long PF17177 166 - 288 1.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 177 - 234 2.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 186 - 217 3.8e-12 PPR repeat
PPR PF01535 192 - 222 2.1e-07 PPR repeat
PPR_2 PF13041 194 - 238 1.4e-14 PPR repeat family
PPR_3 PF13812 218 - 269 1.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 220 - 252 2.3e-15 PPR repeat
PPR_2 PF13041 224 - 273 9.3e-22 PPR repeat family
PPR PF01535 227 - 257 1.1e-09 PPR repeat
PPR_3 PF13812 248 - 303 1.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 255 - 287 8.9e-12 PPR repeat
PPR PF01535 262 - 290 1.7e-07 PPR repeat
PPR_2 PF13041 266 - 307 9e-11 PPR repeat family
PPR_1 PF12854 291 - 323 3.4e-12 PPR repeat
PPR_3 PF13812 294 - 330 1.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 294 - 331 2.4e-10 PPR repeat family
PPR PF01535 297 - 326 1e-07 PPR repeat
PPR_3 PF13812 318 - 370 8.6e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30880 AT1G30880
fragaria_vesca FvH4_3g13200
malus_domestica MD10G1226000.v1.1
prunus_persica Prupe.4G119300_v2.0.a1
pyrus_communis pycom05g22080 pycom10g18990
rosa_chinensis RchiOBHm_Chr5g0021541
rosa_laevigata RLG00000032613
rosa_multiflora Rmu_sc0002052.1_g000012 Rmu_sc0023070.1_g000004
rosa_roxburghii Rroxscaffold_1G00057110
rosa_rugosa Rorug02G0284200 Rorug05G0067100
rosa_samantha Rh5AG156400 Rh5BG155900 Rh5CG169700 Rh5CG170100 Rh5DG156200 Rh5DG156300
rosa_wichuraiana Rw5G013920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1199
Acc36I ACCTGC 2 cut(s) 1278, 1393
AccB7I CCANNNNNTGG 1 cut(s) 1328
AccI GTMKAC 1 cut(s) 686
AciI CCGC 2 cut(s) 111, 206
AclWI GGATC 4 cut(s) 170, 1117, 1130, 1371
AcsI RAATTY 2 cut(s) 1332, 1430
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 3 cut(s) 125, 586, 901
AfeI AGCGCT 2 cut(s) 93, 492
AfiI CCNNNNNNNGG 5 cut(s) 54, 409, 554, 992, 1328
AgsI TTSAA 4 cut(s) 395, 749, 982, 1142
AjnI CCWGG 2 cut(s) 1103, 1202
AleI CACNNNNGTG 1 cut(s) 1373
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 187
Alw44I GTGCAC 1 cut(s) 559
AlwI GGATC 4 cut(s) 170, 1117, 1130, 1371
Ama87I CYCGRG 1 cut(s) 1170
Aor51HI AGCGCT 2 cut(s) 93, 492
AoxI GGCC 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 559
ApeKI GCWGC 5 cut(s) 58, 214, 521, 970, 1049
ApoI RAATTY 2 cut(s) 1332, 1430
AseI ATTAAT 1 cut(s) 594
AspLEI GCGC 4 cut(s) 94, 214, 493, 1200
AspS9I GGNCC 2 cut(s) 79, 1072
AsuHPI GGTGA 4 cut(s) 635, 660, 1080, 1277
AvaI CYCGRG 1 cut(s) 1170
AvaII GGWCC 2 cut(s) 79, 1072
BaeGI GKGCMC 1 cut(s) 563
BaeI ACNNNNGTAYC 4 cut(s) 751, 784, 1227, 1260
BamHI GGATCC 1 cut(s) 1122
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 5 cut(s) 70, 201, 533, 957, 1061
BccI CCATC 7 cut(s) 325, 643, 796, 800, 1063, 1294, 1304
BciT130I CCWGG 2 cut(s) 1105, 1204
BciVI GTATCC 1 cut(s) 525
BclI TGATCA 2 cut(s) 145, 550
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 4 cut(s) 174, 288, 459, 1241
BfmI CTRYAG 2 cut(s) 427, 971
BfoI RGCGCY 3 cut(s) 95, 215, 494
BfuAI ACCTGC 2 cut(s) 1278, 1393
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 5 cut(s) 59, 215, 522, 971, 1050
BlpI GCTNAGC 1 cut(s) 1404
BlsI GCNGC 5 cut(s) 60, 216, 523, 972, 1051
BmcAI AGTACT 1 cut(s) 901
Bme1390I CCNGG 2 cut(s) 1105, 1204
Bme18I GGWCC 2 cut(s) 79, 1072
BmeT110I CYCGRG 1 cut(s) 1170
BmgT120I GGNCC 2 cut(s) 79, 1072
BmiI GGNNCC 2 cut(s) 1109, 1124
BmrFI CCNGG 2 cut(s) 1105, 1204
BmsI GCATC 4 cut(s) 508, 534, 979, 1304
BpiI GAAGAC 1 cut(s) 756
BpmI CTGGAG 2 cut(s) 68, 1126
Bpu1102I GCTNAGC 1 cut(s) 1404
BsaAI YACGTR 2 cut(s) 684, 701
BsaBI GATNNNNATC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 513, 1075, 1203
BsaWI WCCGGW 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 409, 554, 992, 1328
Bse1I ACTGG 4 cut(s) 193, 309, 403, 1021
Bse3DI GCAATG 2 cut(s) 846, 1033
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 2 cut(s) 1105, 1204
BseDI CCNNGG 3 cut(s) 513, 1075, 1203
BseGI GGATG 5 cut(s) 231, 523, 733, 811, 1319
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 5 cut(s) 54, 409, 554, 992, 1328
BseMI GCAATG 2 cut(s) 846, 1033
BseMII CTCAG 3 cut(s) 63, 111, 1395
BseNI ACTGG 4 cut(s) 193, 309, 403, 1021
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 5 cut(s) 70, 201, 533, 957, 1061
BsgI GTGCAG 2 cut(s) 1171, 1256
BshFI GGCC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 1170
BsiSI CCGG 1 cut(s) 343
BslI CCNNNNNNNGG 5 cut(s) 54, 409, 554, 992, 1328
BsmAI GTCTC 1 cut(s) 187
BsmI GAATGC 3 cut(s) 450, 1317, 1345
BsnI GGCC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 1170
Bsp1286I GDGCHC 1 cut(s) 563
Bsp143I GATC 6 cut(s) 145, 162, 168, 550, 1122, 1363
Bsp1720I GCTNAGC 1 cut(s) 1404
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 2 cut(s) 111, 206
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 3 cut(s) 64, 112, 1396
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 1109, 1124
BspMAI CTGCAG 1 cut(s) 975
BspMI ACCTGC 2 cut(s) 1278, 1393
BspPI GGATC 4 cut(s) 170, 1117, 1130, 1371
BspQI GCTCTTC 1 cut(s) 531
BsrDI GCAATG 2 cut(s) 846, 1033
BsrI ACTGG 4 cut(s) 193, 309, 403, 1021
BssECI CCNNGG 3 cut(s) 513, 1075, 1203
BssMI GATC 6 cut(s) 145, 162, 168, 550, 1122, 1363
BssNAI GTATAC 1 cut(s) 687
BssT1I CCWWGG 2 cut(s) 513, 1075
Bst1107I GTATAC 1 cut(s) 687
Bst2UI CCWGG 2 cut(s) 1105, 1204
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 1 cut(s) 531
BstBAI YACGTR 2 cut(s) 684, 701
BstC8I GCNNGC 2 cut(s) 1196, 1401
BstDEI CTNAG 5 cut(s) 72, 120, 1190, 1257, 1404
BstDSI CCRYGG 1 cut(s) 513
BstEII GGTNACC 1 cut(s) 1265
BstF5I GGATG 5 cut(s) 231, 523, 733, 811, 1319
BstH2I RGCGCY 3 cut(s) 95, 215, 494
BstHHI GCGC 4 cut(s) 94, 214, 493, 1200
BstKTI GATC 6 cut(s) 148, 165, 171, 553, 1125, 1366
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 6 cut(s) 145, 162, 168, 550, 1122, 1363
BstMWI GCNNNNNNNGC 1 cut(s) 1405
BstNI CCWGG 2 cut(s) 1105, 1204
BstNSI RCATGY 1 cut(s) 1198
BstPI GGTNACC 1 cut(s) 1265
BstSCI CCNGG 2 cut(s) 1103, 1202
BstSFI CTRYAG 2 cut(s) 427, 971
BstSLI GKGCMC 1 cut(s) 563
BstSNI TACGTA 1 cut(s) 684
BstV1I GCAGC 5 cut(s) 70, 201, 533, 957, 1061
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 1 cut(s) 1122
BstYI RGATCY 1 cut(s) 1122
BstZ17I GTATAC 1 cut(s) 687
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 5 cut(s) 231, 523, 733, 811, 1319
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 2 cut(s) 302, 1140
BveI ACCTGC 2 cut(s) 1278, 1393
Cac8I GCNNGC 2 cut(s) 1196, 1401
CciI TCATGA 1 cut(s) 165
CfoI GCGC 4 cut(s) 94, 214, 493, 1200
Cfr13I GGNCC 2 cut(s) 79, 1072
Csp6I GTAC 3 cut(s) 124, 585, 900
CviAII CATG 9 cut(s) 143, 166, 514, 554, 754, 886, 911, 1115, 1195
CviQI GTAC 3 cut(s) 124, 585, 900
DdeI CTNAG 5 cut(s) 72, 120, 1190, 1257, 1404
DpnI GATC 6 cut(s) 147, 164, 170, 552, 1124, 1365
DpnII GATC 6 cut(s) 145, 162, 168, 550, 1122, 1363
DraI TTTAAA 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco105I TACGTA 1 cut(s) 684
Eco130I CCWWGG 2 cut(s) 513, 1075
Eco47I GGWCC 2 cut(s) 79, 1072
Eco47III AGCGCT 2 cut(s) 93, 492
Eco57I CTGAAG 1 cut(s) 816
Eco88I CYCGRG 1 cut(s) 1170
Eco91I GGTNACC 1 cut(s) 1265
EcoO109I RGGNCCY 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 1265
EcoRI GAATTC 1 cut(s) 1430
EcoRII CCWGG 2 cut(s) 1103, 1202
EcoT14I CCWWGG 2 cut(s) 513, 1075
EcoT22I ATGCAT 2 cut(s) 1253, 1319
ErhI CCWWGG 2 cut(s) 513, 1075
FaeI CATG 9 cut(s) 146, 169, 517, 557, 757, 889, 914, 1118, 1198
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FatI CATG 9 cut(s) 142, 165, 513, 553, 753, 885, 910, 1114, 1194
FauNDI CATATG 1 cut(s) 580
FbaI TGATCA 2 cut(s) 145, 550
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 5 cut(s) 59, 215, 522, 971, 1050
FokI GGATG 5 cut(s) 238, 530, 740, 818, 1326
Fsp4HI GCNGC 5 cut(s) 59, 215, 522, 971, 1050
FspAI RTGCGCAY 1 cut(s) 1199
FspBI CTAG 4 cut(s) 174, 288, 459, 1241
FspI TGCGCA 1 cut(s) 1199
GlaI GCGC 4 cut(s) 93, 213, 492, 1199
GluI GCNGC 5 cut(s) 59, 215, 522, 971, 1050
GsuI CTGGAG 2 cut(s) 68, 1126
HaeII RGCGCY 3 cut(s) 95, 215, 494
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 343
HhaI GCGC 4 cut(s) 94, 214, 493, 1200
Hin1II CATG 9 cut(s) 146, 169, 517, 557, 757, 889, 914, 1118, 1198
Hin6I GCGC 4 cut(s) 92, 212, 491, 1198
HinP1I GCGC 4 cut(s) 92, 212, 491, 1198
HindIII AAGCTT 2 cut(s) 932, 1278
HinfI GANTC 7 cut(s) 107, 308, 385, 423, 569, 915, 952
HpaII CCGG 1 cut(s) 343
HphI GGTGA 4 cut(s) 635, 660, 1080, 1277
Hpy166II GTNNAC 9 cut(s) 126, 295, 561, 668, 687, 786, 824, 869, 1382
Hpy188I TCNGA 3 cut(s) 531, 835, 1436
Hpy188III TCNNGA 9 cut(s) 85, 166, 174, 481, 539, 938, 956, 1061, 1322
Hpy8I GTNNAC 9 cut(s) 126, 295, 561, 668, 687, 786, 824, 869, 1382
HpyAV CCTTC 4 cut(s) 70, 223, 920, 1121
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 4 cut(s) 155, 683, 700, 826
HpyF10VI GCNNNNNNNGC 1 cut(s) 1405
HpyF3I CTNAG 5 cut(s) 72, 120, 1190, 1257, 1404
HpySE526I ACGT 4 cut(s) 155, 683, 700, 826
Hsp92II CATG 9 cut(s) 146, 169, 517, 557, 757, 889, 914, 1118, 1198
HspAI GCGC 4 cut(s) 92, 212, 491, 1198
Ksp22I TGATCA 2 cut(s) 145, 550
Kzo9I GATC 6 cut(s) 145, 162, 168, 550, 1122, 1363
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 634, 1107
Lsp1109I GCAGC 5 cut(s) 70, 201, 533, 957, 1061
LweI GCATC 4 cut(s) 508, 534, 979, 1304
MaeI CTAG 4 cut(s) 174, 288, 459, 1241
MaeII ACGT 4 cut(s) 155, 683, 700, 826
MaeIII GTNAC 4 cut(s) 247, 679, 889, 1265
MalI GATC 6 cut(s) 147, 164, 170, 552, 1124, 1365
MboI GATC 6 cut(s) 145, 162, 168, 550, 1122, 1363
MboII GAAGA 6 cut(s) 266, 407, 518, 761, 822, 935
MfeI CAATTG 1 cut(s) 1215
MflI RGATCY 1 cut(s) 1122
MhlI GDGCHC 1 cut(s) 563
MluCI AATT 8 cut(s) 36, 721, 740, 1215, 1287, 1332, 1418, 1430
MlyI GAGTC 1 cut(s) 909
MnlI CCTC 7 cut(s) 92, 202, 226, 272, 328, 432, 934
Mph1103I ATGCAT 2 cut(s) 1253, 1319
MseI TTAA 7 cut(s) 21, 407, 474, 486, 594, 857, 1100
MslI CAYNNNNRTG 1 cut(s) 1373
MspA1I CMGCKG 2 cut(s) 61, 119
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 1105, 1204
MunI CAATTG 1 cut(s) 1215
Mva1269I GAATGC 3 cut(s) 450, 1317, 1345
MvaI CCWGG 2 cut(s) 1105, 1204
MwoI GCNNNNNNNGC 1 cut(s) 1405
NcoI CCATGG 1 cut(s) 513
NdeI CATATG 1 cut(s) 580
NdeII GATC 6 cut(s) 145, 162, 168, 550, 1122, 1363
NlaIII CATG 9 cut(s) 146, 169, 517, 557, 757, 889, 914, 1118, 1198
NlaIV GGNNCC 2 cut(s) 1109, 1124
NmeAIII GCCGAG 1 cut(s) 1414
NmuCI GTSAC 1 cut(s) 1265
NsbI TGCGCA 1 cut(s) 1199
NsiI ATGCAT 2 cut(s) 1253, 1319
NspI RCATGY 1 cut(s) 1198
OliI CACNNNNGTG 1 cut(s) 1373
PaeI GCATGC 1 cut(s) 1198
PaeR7I CTCGAG 1 cut(s) 1170
PagI TCATGA 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PctI GAATGC 3 cut(s) 450, 1317, 1345
PfeI GAWTC 6 cut(s) 107, 308, 385, 423, 569, 952
PflMI CCANNNNNTGG 1 cut(s) 1328
PkrI GCNGC 5 cut(s) 60, 216, 523, 972, 1051
PleI GAGTC 1 cut(s) 909
PpsI GAGTC 1 cut(s) 909
Ppu21I YACGTR 2 cut(s) 684, 701
PpuMI RGGWCCY 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 1103, 1202
PspEI GGTNACC 1 cut(s) 1265
PspGI CCWGG 2 cut(s) 1103, 1202
PspN4I GGNNCC 2 cut(s) 1109, 1124
PspPI GGNCC 2 cut(s) 79, 1072
PspPPI RGGWCCY 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 1170
PstI CTGCAG 1 cut(s) 975
PsuI RGATCY 1 cut(s) 1122
PvuII CAGCTG 2 cut(s) 61, 119
RsaI GTAC 3 cut(s) 125, 586, 901
RsaNI GTAC 3 cut(s) 124, 585, 900
RseI CAYNNNNRTG 1 cut(s) 1373
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 7 cut(s) 21, 407, 474, 486, 594, 857, 1100
SatI GCNGC 5 cut(s) 59, 215, 522, 971, 1050
Sau3AI GATC 6 cut(s) 145, 162, 168, 550, 1122, 1363
Sau96I GGNCC 2 cut(s) 79, 1072
ScaI AGTACT 1 cut(s) 901
SchI GAGTC 1 cut(s) 909
ScrFI CCNGG 2 cut(s) 1105, 1204
SduI GDGCHC 1 cut(s) 563
SfaNI GCATC 4 cut(s) 508, 534, 979, 1304
SfcI CTRYAG 2 cut(s) 427, 971
Sfr274I CTCGAG 1 cut(s) 1170
SinI GGWCC 2 cut(s) 79, 1072
SlaI CTCGAG 1 cut(s) 1170
SmiMI CAYNNNNRTG 1 cut(s) 1373
SmlI CTYRAG 1 cut(s) 1170
SmoI CTYRAG 1 cut(s) 1170
SnaBI TACGTA 1 cut(s) 684
SphI GCATGC 1 cut(s) 1198
Sse9I AATT 8 cut(s) 36, 721, 740, 1215, 1287, 1332, 1418, 1430
SsiI CCGC 2 cut(s) 111, 206
SspMI CTAG 4 cut(s) 174, 288, 459, 1241
StyD4I CCNGG 2 cut(s) 1103, 1202
StyI CCWWGG 2 cut(s) 513, 1075
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 4 cut(s) 158, 686, 703, 829
TaqI TCGA 5 cut(s) 29, 324, 937, 1171, 1285
TasI AATT 8 cut(s) 36, 721, 740, 1215, 1287, 1332, 1418, 1430
TatI WGTACW 2 cut(s) 123, 899
TfiI GAWTC 6 cut(s) 107, 308, 385, 423, 569, 952
Tru1I TTAA 7 cut(s) 21, 407, 474, 486, 594, 857, 1100
Tru9I TTAA 7 cut(s) 21, 407, 474, 486, 594, 857, 1100
TscAI CASTG 2 cut(s) 309, 1140
TseFI GTSAC 1 cut(s) 1265
TseI GCWGC 5 cut(s) 58, 214, 521, 970, 1049
Tsp45I GTSAC 1 cut(s) 1265
TspDTI ATGAA 7 cut(s) 242, 561, 744, 770, 899, 980, 1103
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 309, 1140
Van91I CCANNNNNTGG 1 cut(s) 1328
VneI GTGCAC 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 79, 1072
VspI ATTAAT 1 cut(s) 594
XapI RAATTY 2 cut(s) 1332, 1430
XbaI TCTAGA 1 cut(s) 173
XceI RCATGY 1 cut(s) 1198
XhoI CTCGAG 1 cut(s) 1170
XmiI GTMKAC 1 cut(s) 686
XspI CTAG 4 cut(s) 174, 288, 459, 1241
ZrmI AGTACT 1 cut(s) 901
Zsp2I ATGCAT 2 cut(s) 1253, 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.