FvH4_3g14660

L-ascorbate oxidase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
9038326 .. 9041336
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14660.t2

Sequence Viewer

Length: 1740 bp
ATGGTTAAGATTTTAGAACTACACAGAACTTCGGTGAAGCTGTTTGATTTGTGGAGTTTAATCTGTTTGGTAGCTTTTCCGATAGTTGAAGCAAGAGTTCGGCATTACAGATGGGATGTGAAGTATGAGTACAAATCTCCAGATTGCTTTCAGAAGCTGGTTATGACCATCAATGGAGGAACCCCAGGTCCAACAATATTGGCACAGCAGGGTGATACAATTGTAGTTGAGCTCAAGAATAGCTTGTTAACCGAGAATATAGCTATCCACTGGCATGGAATTCGACAGATAGGAACACCTTGGAGTGATGGAACAGAAGGTGTGACTCAATGTCCTATCTTACCAGGAGATACCTTCACATACAAGTATGTTGTGGATAGGGCTGGGACATTTATGTACCATGGACATTATGGAATGCAAAGAGAAGCTGGGTTATATGGATCCATTATTGTATCACTTCCCAGTGGAGCTTCTGAGCCCTTTGCTTATGATTATGACAGAACCATTATCCTAAATGATTGGTTCCACAAAAGCACTTATGAGGAAGCTACTGGCCTGTCCTCCATTCCCTTTGTTTGGGTTGGGGAGCCTCAGTCACTTCTGATTAATGGAAGAGGGAGATACAACTGCTATCTGCTAGCAAATCCAAGCCTGGGAGCCTGTAATGTGACAAATCCAGAGTGTCTACCCCATGTTGTGACAGTAATTCCTGGCAAAACATACCGATTAAGGATTGGTAGCTTGACTGCTTTATCAGCTCTCAGTTTTCAGATTGAGGGTCACAATTTTACTGTCGTTGAAGCTGATGGGCACTATGTGGAGCCATTTGTGACCAAAAACCTATTCCTTTACTCTGGTGAGACGTACTCTATCCTAGTAAAAGCAAACCAAGACCCATCAAGAAACTATTGGATGACTACAAGTGTAGTTGGCAGAGAACCTAAAACCCCAACTGGATTAGCAATCCTCAATTATTATCCTACCCATTTCAGGAAATCCCCTTCAACAGTTCCAACCACAGGCCCTGCTTGGAATGACACAGCACCAAGACTAGCTCAGAGTCTTGCTATCAAAGCCCTCCAAGGTACTATTCACACCCCTCCTCCCACTTCAGACAAAACCATTGTGCTTCTCAACACCCAAAACAAGATCGAAGGGCACGTCCGCTGGTCCTTGAACAATGTATCTTTCTCTATTCCACACACACCTTATTTGATAGCTTTGAAGGAGTTGTTGAATCTAAGCCATGTGTTTGAGCAAAAACCACCTCCAGAAAACTATGACTTCAACAACTATGATATATACAGTGTTGCCAAGAATGTGAATGCTACTTCAAGCAATGGCTTATACAGGTTGAAGTTCAATAGCACAGTGGATGTTGTACTGCAAAATGCCAACACGATGACTGCAAACAACAGTGAAATACATCCATGGCATCTCCATGGTCACGACTTTTGGGTGTTGGGATATGGAAAAGGAAAGTTCGACATTACAAAAGATGTGGCAAAATACAATCTTGTCAATCCGATCATGAAGAACACAGTGCCAGTACACCCTTATGGTTGGACTGCTTTGAGATTTCGAGCAGATAATCCTGGCGTTTGGGCATTTCATTGCCATATAGAGTCGCATTTCTACATGGGAATGGGAGTGGTTTTTGAATCTGGGGTGGAGAAGGTGGCAAAGCTGCCATCTTTTATCATGGGTTGTGGAGAAACTAAAAGCTATCATAGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

580

Amino Acids

65.04

Weight (kDa)

8.01

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 36 - 195 3.7e-42 Multicopper oxidase
Cu-oxidase_2 PF07731 300 - 424 4.7e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 685
AciI CCGC 1 cut(s) 1165
AclWI GGATC 2 cut(s) 435, 448
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 1095
AdeI CACNNNGTG 1 cut(s) 817
AfaI GTAC 6 cut(s) 131, 398, 866, 1087, 1383, 1551
AfiI CCNNNNNNNGG 4 cut(s) 576, 653, 990, 1019
AhdI GACNNNNNGTC 1 cut(s) 330
AjiI CACGTC 1 cut(s) 1162
AjnI CCWGG 5 cut(s) 184, 343, 651, 709, 1594
AjuI GAANNNNNNNTTGG 4 cut(s) 827, 859, 1074, 1106
AloI GAACNNNNNNTCC 2 cut(s) 172, 204
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 854
AlwI GGATC 2 cut(s) 435, 448
AlwNI CAGNNNCTG 2 cut(s) 157, 1025
AoxI GGCC 3 cut(s) 553, 1021, 1733
ApeKI GCWGC 1 cut(s) 1687
ApoI RAATTY 1 cut(s) 279
ArsI GACNNNNNNTTYG 2 cut(s) 1146, 1178
AseI ATTAAT 1 cut(s) 606
AspS9I GGNCC 3 cut(s) 188, 1022, 1170
AsuHPI GGTGA 3 cut(s) 46, 224, 869
AsuNHI GCTAGC 1 cut(s) 637
AvaII GGWCC 2 cut(s) 188, 1170
BaeGI GKGCMC 2 cut(s) 813, 1161
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BamHI GGATCC 1 cut(s) 440
BanII GRGCYC 2 cut(s) 234, 480
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 1674
BccI CCATC 6 cut(s) 105, 176, 302, 800, 904, 1699
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 5 cut(s) 186, 345, 653, 711, 1596
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 3 cut(s) 638, 875, 1052
BisI GCNGC 1 cut(s) 1688
BlsI GCNGC 1 cut(s) 1689
Bme1390I CCNGG 5 cut(s) 186, 345, 653, 711, 1596
Bme18I GGWCC 2 cut(s) 188, 1170
BmeRI GACNNNNNGTC 1 cut(s) 330
BmgBI CACGTC 1 cut(s) 1162
BmgT120I GGNCC 3 cut(s) 188, 1022, 1170
BmiI GGNNCC 6 cut(s) 181, 442, 524, 588, 658, 822
BmrFI CCNGG 5 cut(s) 186, 345, 653, 711, 1596
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 1 cut(s) 1444
BmtI GCTAGC 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 456
BplI GAGNNNNNCTC 2 cut(s) 851, 883
BpmI CTGGAG 2 cut(s) 123, 1254
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 7 cut(s) 184, 299, 400, 652, 1081, 1430, 1441
BsaXI ACNNNNNCTCC 4 cut(s) 578, 608, 1087, 1117
Bsc4I CCNNNNNNNGG 4 cut(s) 576, 653, 990, 1019
Bse1I ACTGG 5 cut(s) 275, 462, 556, 958, 1547
Bse3DI GCAATG 2 cut(s) 1345, 1612
BseBI CCWGG 5 cut(s) 186, 345, 653, 711, 1596
BseDI CCNNGG 7 cut(s) 184, 299, 400, 652, 1081, 1430, 1441
BseGI GGATG 4 cut(s) 121, 918, 1381, 1426
BseLI CCNNNNNNNGG 4 cut(s) 576, 653, 990, 1019
BseMI GCAATG 2 cut(s) 1345, 1612
BseMII CTCAG 4 cut(s) 465, 605, 775, 1070
BseNI ACTGG 5 cut(s) 275, 462, 556, 958, 1547
BseRI GAGGAG 1 cut(s) 1092
BseSI GKGCMC 2 cut(s) 813, 1161
BseXI GCAGC 1 cut(s) 1674
BseYI CCCAGC 2 cut(s) 383, 428
BshFI GGCC 3 cut(s) 555, 1023, 1735
BsiHKAI GWGCWC 1 cut(s) 234
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 4 cut(s) 576, 653, 990, 1019
BsmAI GTCTC 1 cut(s) 854
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 2 cut(s) 420, 1330
BsnI GGCC 3 cut(s) 555, 1023, 1735
Bsp1286I GDGCHC 4 cut(s) 234, 480, 813, 1161
Bsp143I GATC 3 cut(s) 440, 1149, 1527
Bsp19I CCATGG 3 cut(s) 400, 1430, 1441
BspACI CCGC 1 cut(s) 1165
BspANI GGCC 3 cut(s) 555, 1023, 1735
BspCNI CTCAG 4 cut(s) 466, 604, 774, 1069
BspHI TCATGA 1 cut(s) 1530
BspLI GGNNCC 6 cut(s) 181, 442, 524, 588, 658, 822
BspOI GCTAGC 1 cut(s) 641
BspPI GGATC 2 cut(s) 435, 448
BsrDI GCAATG 2 cut(s) 1345, 1612
BsrI ACTGG 5 cut(s) 275, 462, 556, 958, 1547
BssECI CCNNGG 7 cut(s) 184, 299, 400, 652, 1081, 1430, 1441
BssMI GATC 3 cut(s) 440, 1149, 1527
BssT1I CCWWGG 5 cut(s) 299, 400, 1081, 1430, 1441
Bst2UI CCWGG 5 cut(s) 186, 345, 653, 711, 1596
Bst4CI ACNGT 7 cut(s) 703, 793, 1009, 1307, 1372, 1418, 1543
Bst6I CTCTTC 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 5 cut(s) 474, 591, 761, 1056, 1241
BstDSI CCRYGG 3 cut(s) 400, 1430, 1441
BstF5I GGATG 4 cut(s) 121, 918, 1381, 1426
BstKTI GATC 3 cut(s) 443, 1152, 1530
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 3 cut(s) 440, 1149, 1527
BstMWI GCNNNNNNNGC 2 cut(s) 755, 1073
BstNI CCWGG 5 cut(s) 186, 345, 653, 711, 1596
BstSCI CCNGG 5 cut(s) 184, 343, 651, 709, 1594
BstSLI GKGCMC 2 cut(s) 813, 1161
BstV1I GCAGC 1 cut(s) 1674
BstX2I RGATCY 1 cut(s) 440
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 3 cut(s) 555, 1023, 1735
BtgI CCRYGG 3 cut(s) 400, 1430, 1441
BtrI CACGTC 1 cut(s) 1162
BtsCI GGATG 4 cut(s) 121, 918, 1381, 1426
BtsIMutI CAGTG 6 cut(s) 268, 469, 1312, 1377, 1423, 1548
Cac8I GCNNGC 1 cut(s) 639
CaiI CAGNNNCTG 2 cut(s) 157, 1025
CciI TCATGA 1 cut(s) 1530
Cfr13I GGNCC 3 cut(s) 188, 1022, 1170
Csp6I GTAC 6 cut(s) 130, 397, 865, 1086, 1382, 1550
CspCI CAANNNNNGTGG 2 cut(s) 1482, 1517
CviAII CATG 9 cut(s) 275, 401, 692, 1247, 1431, 1442, 1531, 1639, 1702
CviQI GTAC 6 cut(s) 130, 397, 865, 1086, 1382, 1550
DdeI CTNAG 5 cut(s) 474, 591, 761, 1056, 1241
DpnI GATC 3 cut(s) 442, 1151, 1529
DpnII GATC 3 cut(s) 440, 1149, 1527
DraIII CACNNNGTG 1 cut(s) 817
DriI GACNNNNNGTC 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 607
Eam1105I GACNNNNNGTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 607
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 5 cut(s) 299, 400, 1081, 1430, 1441
Eco24I GRGCYC 2 cut(s) 234, 480
Eco47I GGWCC 2 cut(s) 188, 1170
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 1095
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 1022
EcoRI GAATTC 1 cut(s) 279
EcoRII CCWGG 5 cut(s) 184, 343, 651, 709, 1594
EcoT14I CCWWGG 5 cut(s) 299, 400, 1081, 1430, 1441
EcoT38I GRGCYC 2 cut(s) 234, 480
ErhI CCWWGG 5 cut(s) 299, 400, 1081, 1430, 1441
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 9 cut(s) 278, 404, 695, 1250, 1434, 1445, 1534, 1642, 1705
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 1 cut(s) 400
FatI CATG 9 cut(s) 274, 400, 691, 1246, 1430, 1441, 1530, 1638, 1701
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 1 cut(s) 1688
FokI GGATG 4 cut(s) 128, 925, 1388, 1413
FriOI GRGCYC 2 cut(s) 234, 480
Fsp4HI GCNGC 1 cut(s) 1688
FspBI CTAG 3 cut(s) 638, 875, 1052
GluI GCNGC 1 cut(s) 1688
GsaI CCCAGC 2 cut(s) 387, 432
GsuI CTGGAG 2 cut(s) 123, 1254
HaeIII GGCC 3 cut(s) 555, 1023, 1735
Hin1II CATG 9 cut(s) 278, 404, 695, 1250, 1434, 1445, 1534, 1642, 1705
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 5 cut(s) 325, 1060, 1237, 1625, 1661
HpaI GTTAAC 1 cut(s) 249
HphI GGTGA 3 cut(s) 46, 224, 869
Hpy166II GTNNAC 3 cut(s) 249, 686, 1552
Hpy188I TCNGA 8 cut(s) 81, 153, 475, 603, 771, 1059, 1114, 1527
Hpy188III TCNNGA 8 cut(s) 140, 235, 677, 900, 991, 1271, 1448, 1531
Hpy8I GTNNAC 3 cut(s) 249, 686, 1552
HpyAV CCTTC 6 cut(s) 311, 364, 1011, 1148, 1219, 1669
HpyCH4III ACNGT 7 cut(s) 703, 793, 1009, 1307, 1372, 1418, 1543
HpyCH4IV ACGT 2 cut(s) 863, 1161
HpyCH4V TGCA 3 cut(s) 418, 1387, 1409
HpyF10VI GCNNNNNNNGC 2 cut(s) 755, 1073
HpyF3I CTNAG 5 cut(s) 474, 591, 761, 1056, 1241
HpySE526I ACGT 2 cut(s) 863, 1161
Hsp92II CATG 9 cut(s) 278, 404, 695, 1250, 1434, 1445, 1534, 1642, 1705
KspAI GTTAAC 1 cut(s) 249
Kzo9I GATC 3 cut(s) 440, 1149, 1527
LmnI GCTCC 4 cut(s) 467, 586, 656, 820
Lsp1109I GCAGC 1 cut(s) 1674
LweI GCATC 1 cut(s) 1444
MaeI CTAG 3 cut(s) 638, 875, 1052
MaeII ACGT 2 cut(s) 863, 1161
MaeIII GTNAC 7 cut(s) 322, 594, 667, 697, 779, 829, 1445
MalI GATC 3 cut(s) 442, 1151, 1529
MboI GATC 3 cut(s) 440, 1149, 1527
MboII GAAGA 2 cut(s) 624, 1546
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 4 cut(s) 234, 480, 813, 1161
MluCI AATT 5 cut(s) 219, 279, 705, 784, 970
MlyI GAGTC 3 cut(s) 319, 1069, 1634
MmeI TCCRAC 3 cut(s) 215, 1037, 1544
MseI TTAA 5 cut(s) 6, 59, 248, 606, 728
MslI CAYNNNNRTG 4 cut(s) 273, 1440, 1557, 1643
MspA1I CMGCKG 1 cut(s) 1167
MspR9I CCNGG 5 cut(s) 186, 345, 653, 711, 1596
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 2 cut(s) 420, 1330
MvaI CCWGG 5 cut(s) 186, 345, 653, 711, 1596
MwoI GCNNNNNNNGC 2 cut(s) 755, 1073
NcoI CCATGG 3 cut(s) 400, 1430, 1441
NdeII GATC 3 cut(s) 440, 1149, 1527
NheI GCTAGC 1 cut(s) 637
NlaIII CATG 9 cut(s) 278, 404, 695, 1250, 1434, 1445, 1534, 1642, 1705
NlaIV GGNNCC 6 cut(s) 181, 442, 524, 588, 658, 822
NmuCI GTSAC 7 cut(s) 322, 594, 667, 697, 779, 829, 1445
PagI TCATGA 1 cut(s) 1530
PcsI WCGNNNNNNNCGW 1 cut(s) 1158
PctI GAATGC 2 cut(s) 420, 1330
PfeI GAWTC 2 cut(s) 1237, 1661
PkrI GCNGC 1 cut(s) 1689
PleI GAGTC 3 cut(s) 319, 1068, 1633
PpsI GAGTC 3 cut(s) 319, 1068, 1633
PshBI ATTAAT 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 5 cut(s) 184, 343, 651, 709, 1594
PspFI CCCAGC 2 cut(s) 383, 428
PspGI CCWGG 5 cut(s) 184, 343, 651, 709, 1594
PspN4I GGNNCC 6 cut(s) 181, 442, 524, 588, 658, 822
PspPI GGNCC 3 cut(s) 188, 1022, 1170
PstNI CAGNNNCTG 2 cut(s) 157, 1025
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 6 cut(s) 131, 398, 866, 1087, 1383, 1551
RsaNI GTAC 6 cut(s) 130, 397, 865, 1086, 1382, 1550
RseI CAYNNNNRTG 4 cut(s) 273, 1440, 1557, 1643
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 5 cut(s) 6, 59, 248, 606, 728
SatI GCNGC 1 cut(s) 1688
Sau3AI GATC 3 cut(s) 440, 1149, 1527
Sau96I GGNCC 3 cut(s) 188, 1022, 1170
SchI GAGTC 3 cut(s) 319, 1069, 1634
ScrFI CCNGG 5 cut(s) 186, 345, 653, 711, 1596
SduI GDGCHC 4 cut(s) 234, 480, 813, 1161
SfaNI GCATC 1 cut(s) 1444
SinI GGWCC 2 cut(s) 188, 1170
SmiMI CAYNNNNRTG 4 cut(s) 273, 1440, 1557, 1643
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 5 cut(s) 219, 279, 705, 784, 970
SsiI CCGC 1 cut(s) 1165
SspI AATATT 1 cut(s) 198
SspMI CTAG 3 cut(s) 638, 875, 1052
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 5 cut(s) 184, 343, 651, 709, 1594
StyI CCWWGG 5 cut(s) 299, 400, 1081, 1430, 1441
TaaI ACNGT 7 cut(s) 703, 793, 1009, 1307, 1372, 1418, 1543
TaiI ACGT 2 cut(s) 866, 1164
TaqI TCGA 4 cut(s) 283, 1152, 1485, 1582
TasI AATT 5 cut(s) 219, 279, 705, 784, 970
TatI WGTACW 3 cut(s) 129, 1381, 1549
TfiI GAWTC 2 cut(s) 1237, 1661
Tru1I TTAA 5 cut(s) 6, 59, 248, 606, 728
Tru9I TTAA 5 cut(s) 6, 59, 248, 606, 728
TscAI CASTG 6 cut(s) 275, 469, 1312, 1377, 1423, 1548
TseFI GTSAC 7 cut(s) 322, 594, 667, 697, 779, 829, 1445
TseI GCWGC 1 cut(s) 1687
Tsp45I GTSAC 7 cut(s) 322, 594, 667, 697, 779, 829, 1445
TspDTI ATGAA 2 cut(s) 1547, 1601
TspRI CASTG 6 cut(s) 275, 469, 1312, 1377, 1423, 1548
VpaK11BI GGWCC 2 cut(s) 188, 1170
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 3 cut(s) 638, 875, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.