RLG00000008611

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
33306587 .. 33308854
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008611

Sequence Viewer

Length: 1440 bp
ATGGTTGCGCTTTTACAGAGAAATAGCTGCATTTTTAAGTTATTGGGTTTGTGTTTACTCTTCTGCTGTTTGGTTGAGATTCCAGCAGTGGAGGCTAGGATTAGGCATTACAAATGGGAGTTGAAGTATGAGTACAAATCCCCTGATTGCTTTAAGAAACTTGTTATCGCCATCGAACCAATTGGAACACCATGGAGTGATGGAGCCGAAGGGGTGACTCAATGTCCAATATTGCCTGGAGACACTTTCAAATATCAGTTTGTTGTTGATAGGCCTGGAACTTATCTGTACCATGCTCACTATGGAATGCAAAGAGAAGCTGGCTTATATGGATCAATTCGAGTAGCACTTCCTGAAGGAGAATCAGAGCCCTTCCTCTACGATTATGATCGAAGCATCATACTCAATGATTGGTACCACAGAAGCACTTATGAACATGCGGTCGGACTATCTTCCAATCCTTTTGTCTGGCTTGGGGAACCTCAGTCACTTTTGATACAAGGTAAAGGAAGATTCAACTGCTCTAGCATCGCCACTCCAAGCTTAGAACCTGGTGTTTGTAACACAACTAGTCTTGACTGCTCTCCTTATGCAGTGACTGTAGTCCCTAGCAAAACTTATCGACTAAGGATTGCTAGTTTGACTGCTCTATCAGCCCTCAGTTTCCAAATAGAGGGTCATAATTTGACAGTGGTTGAAGCAGATGGGCATTATGTAGAGCCATTTGTTGTAAAGAACCTGTTCATATATTCCGGTGAGACATATTTGGTTCTAATAAAAGTAGACCAAGATCCTTCAAGAAACTATTGGATGACAACCAACATTGTTAGCCGAAATCCCACCACCACCACCCAAAATGTCACCACCACCACCCCACCTGGTTTAGCCTTACTGAATTACTATCCTAACCATCCTCGTAGATCTCCTCCAACAGTACCACCAGCAGGGCCGGCTTGGAATGATGTTCAACCCCGACTAAATCAAAGTCTAGCCATTAAGGCACACCGAGATGTCATTCACACCCCTCCCCAAACCCCAGACAGAGTCATTGTTTTCCCCAACACCCAAAACAAGATAAATGCCAATACTCGCTGGTCGGTGAATAATGTCTCATTCACTCTTCCTCACACACCTTACCTCATTGCACTTCAACAAAACCTCACTGATGCATTTGATCAAACACCTCCGCCGGAAGGATATGACTTTGTGAACTATGACATCTACAAAGTGGCAAACAACAGCAATGCTACAACAAGTGATGGGATTTACAGGCTCCAGTTCAACACAACAGTGGACATAATCCTGCAAAATGCAAACACCATGAATGCAAACAACAGCGAGACGCATCCGCGGCATTTGCATGGTCACGTTTTTGGGTACTTGGATATGGGGAAGGAAAGTTTGAAATCAACAATGACCCAAAGAAGTACAATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

53.97

Weight (kDa)

6.56

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 62 - 116 2e-16 Multicopper oxidase
Cu-oxidase PF00394 132 - 301 6.3e-40 Multicopper oxidase
Cu-oxidase_2 PF07731 408 - 467 7.2e-08 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 783
AccII CGCG 1 cut(s) 1351
AciI CCGC 4 cut(s) 440, 1187, 1349, 1351
AclWI GGATC 2 cut(s) 340, 785
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 6 cut(s) 134, 290, 416, 936, 1379, 1429
AfiI CCNNNNNNNGG 3 cut(s) 673, 944, 1193
AgsI TTSAA 9 cut(s) 124, 250, 517, 698, 798, 968, 1151, 1282, 1405
AhdI GACNNNNNGTC 1 cut(s) 222
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 4 cut(s) 235, 274, 550, 877
AjuI GAANNNNNNNTTGG 1 cut(s) 1417
AleI CACNNNNGTG 1 cut(s) 1289
AluBI AGCT 3 cut(s) 27, 320, 543
AluI AGCT 3 cut(s) 27, 320, 543
Alw26I GTCTC 4 cut(s) 234, 752, 1114, 1334
AlwI GGATC 2 cut(s) 340, 785
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 2 cut(s) 272, 947
ApeKI GCWGC 1 cut(s) 27
ArsI GACNNNNNNTTYG 2 cut(s) 661, 693
Asp700I GAANNNNTTC 1 cut(s) 740
Asp718I GGTACC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 947
AsuHPI GGTGA 4 cut(s) 226, 767, 853, 1111
BanI GGYRCC 1 cut(s) 414
BanII GRGCYC 1 cut(s) 372
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BbvI GCAGC 1 cut(s) 14
BccI CCATC 5 cut(s) 179, 194, 698, 918, 1253
BciT130I CCWGG 4 cut(s) 237, 276, 552, 879
BclI TGATCA 1 cut(s) 1174
BcoDI GTCTC 4 cut(s) 234, 752, 1114, 1334
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 6 cut(s) 96, 525, 570, 609, 636, 989
BfmI CTRYAG 1 cut(s) 600
BglI GCCNNNNNGGC 1 cut(s) 998
BglII AGATCT 1 cut(s) 920
BisI GCNGC 2 cut(s) 28, 1352
BlsI GCNGC 2 cut(s) 29, 1353
Bme1390I CCNGG 4 cut(s) 237, 276, 552, 879
BmeRI GACNNNNNGTC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 947
BmiI GGNNCC 4 cut(s) 205, 416, 480, 1274
BmrFI CCNGG 4 cut(s) 237, 276, 552, 879
BmsI GCATC 4 cut(s) 405, 537, 1156, 1354
BoxI GACNNNNGTC 1 cut(s) 602
BpmI CTGGAG 2 cut(s) 258, 1259
BsaBI GATNNNNATC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 191, 1349
BsaWI WCCGGW 1 cut(s) 752
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 3 cut(s) 673, 944, 1193
Bse118I RCCGGY 1 cut(s) 949
Bse1I ACTGG 1 cut(s) 1276
Bse3DI GCAATG 2 cut(s) 1140, 1249
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 4 cut(s) 237, 276, 552, 879
BseDI CCNNGG 2 cut(s) 191, 1349
BseGI GGATG 3 cut(s) 816, 910, 1345
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 3 cut(s) 673, 944, 1193
BseMI GCAATG 2 cut(s) 1140, 1249
BseMII CTCAG 2 cut(s) 497, 673
BseNI ACTGG 1 cut(s) 1276
BseRI GAGGAG 1 cut(s) 915
BseXI GCAGC 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 1351
Bsh1285I CGRYCG 1 cut(s) 444
BshFI GGCC 2 cut(s) 274, 949
BshNI GGYRCC 1 cut(s) 414
BsiEI CGRYCG 1 cut(s) 444
BsiSI CCGG 3 cut(s) 753, 950, 1190
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 3 cut(s) 673, 944, 1193
BsmAI GTCTC 4 cut(s) 234, 752, 1114, 1334
BsmBI CGTCTC 1 cut(s) 1334
BsmFI GGGAC 1 cut(s) 590
BsmI GAATGC 2 cut(s) 312, 1330
BsnI GGCC 2 cut(s) 274, 949
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 5 cut(s) 332, 388, 790, 920, 1174
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 4 cut(s) 440, 1187, 1349, 1351
BspANI GGCC 2 cut(s) 274, 949
BspCNI CTCAG 2 cut(s) 496, 672
BspFNI CGCG 1 cut(s) 1351
BspLI GGNNCC 4 cut(s) 205, 416, 480, 1274
BspPI GGATC 2 cut(s) 340, 785
BspT107I GGYRCC 1 cut(s) 414
BsrDI GCAATG 2 cut(s) 1140, 1249
BsrFI RCCGGY 1 cut(s) 949
BsrI ACTGG 1 cut(s) 1276
BssAI RCCGGY 1 cut(s) 949
BssECI CCNNGG 2 cut(s) 191, 1349
BssMI GATC 5 cut(s) 332, 388, 790, 920, 1174
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 4 cut(s) 237, 276, 552, 879
Bst4CI ACNGT 4 cut(s) 601, 691, 934, 1291
Bst6I CTCTTC 2 cut(s) 65, 1125
BstC8I GCNNGC 2 cut(s) 322, 951
BstDEI CTNAG 4 cut(s) 483, 544, 626, 659
BstDSI CCRYGG 2 cut(s) 191, 1349
BstF5I GGATG 3 cut(s) 816, 910, 1345
BstFNI CGCG 1 cut(s) 1351
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 5 cut(s) 335, 391, 793, 923, 1177
BstMAI GTCTC 4 cut(s) 234, 752, 1114, 1334
BstMBI GATC 5 cut(s) 332, 388, 790, 920, 1174
BstMCI CGRYCG 1 cut(s) 444
BstMWI GCNNNNNNNGC 6 cut(s) 92, 653, 950, 998, 1351, 1357
BstNI CCWGG 4 cut(s) 237, 276, 552, 879
BstNSI RCATGY 1 cut(s) 440
BstPAI GACNNNNGTC 1 cut(s) 602
BstSCI CCNGG 4 cut(s) 235, 274, 550, 877
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 1 cut(s) 1351
BstV1I GCAGC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 790, 920
BstYI RGATCY 2 cut(s) 790, 920
BsuRI GGCC 2 cut(s) 274, 949
BtgI CCRYGG 2 cut(s) 191, 1349
BtgZI GCGATG 1 cut(s) 514
BtsCI GGATG 3 cut(s) 816, 910, 1345
BtsI GCAGTG 2 cut(s) 93, 600
BtsIMutI CAGTG 5 cut(s) 93, 600, 696, 1161, 1296
Cac8I GCNNGC 2 cut(s) 322, 951
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 949
Cfr13I GGNCC 1 cut(s) 947
Cfr42I CCGCGG 1 cut(s) 1352
CseI GACGC 1 cut(s) 1351
CsiI ACCWGGT 2 cut(s) 550, 877
Csp6I GTAC 6 cut(s) 133, 289, 415, 935, 1378, 1428
CviAII CATG 5 cut(s) 192, 293, 437, 1321, 1361
CviQI GTAC 6 cut(s) 133, 289, 415, 935, 1378, 1428
DdeI CTNAG 4 cut(s) 483, 544, 626, 659
DpnI GATC 5 cut(s) 334, 390, 792, 922, 1176
DpnII GATC 5 cut(s) 332, 388, 790, 920, 1174
DriI GACNNNNNGTC 1 cut(s) 222
Eam1104I CTCTTC 2 cut(s) 65, 1125
Eam1105I GACNNNNNGTC 1 cut(s) 222
EarI CTCTTC 2 cut(s) 65, 1125
EciI GGCGGA 1 cut(s) 1176
Eco130I CCWWGG 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 375
EcoRII CCWGG 4 cut(s) 235, 274, 550, 877
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 1171
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 191
Esp3I CGTCTC 1 cut(s) 1334
FaeI CATG 5 cut(s) 195, 296, 440, 1324, 1364
FaqI GGGAC 1 cut(s) 590
FatI CATG 5 cut(s) 191, 292, 436, 1320, 1360
FbaI TGATCA 1 cut(s) 1174
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 2 cut(s) 28, 1352
FokI GGATG 3 cut(s) 823, 897, 1332
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 28, 1352
FspBI CTAG 6 cut(s) 96, 525, 570, 609, 636, 989
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 28, 1352
GsuI CTGGAG 2 cut(s) 258, 1259
HaeIII GGCC 2 cut(s) 274, 949
HapII CCGG 3 cut(s) 753, 950, 1190
HgaI GACGC 1 cut(s) 1351
HhaI GCGC 1 cut(s) 10
Hin1II CATG 5 cut(s) 195, 296, 440, 1324, 1364
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 5 cut(s) 79, 217, 362, 513, 1044
HpaII CCGG 3 cut(s) 753, 950, 1190
HphI GGTGA 4 cut(s) 226, 767, 853, 1111
Hpy166II GTNNAC 4 cut(s) 56, 784, 1210, 1294
Hpy188I TCNGA 2 cut(s) 367, 446
Hpy188III TCNNGA 3 cut(s) 353, 575, 798
Hpy8I GTNNAC 4 cut(s) 56, 784, 1210, 1294
HpyAV CCTTC 6 cut(s) 203, 350, 382, 804, 1187, 1387
HpyCH4III ACNGT 4 cut(s) 601, 691, 934, 1291
HpyCH4IV ACGT 1 cut(s) 1368
HpyCH4V TGCA 9 cut(s) 30, 310, 593, 1145, 1169, 1306, 1313, 1328, 1360
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 653, 950, 998, 1351, 1357
HpyF3I CTNAG 4 cut(s) 483, 544, 626, 659
HpySE526I ACGT 1 cut(s) 1368
Hsp92II CATG 5 cut(s) 195, 296, 440, 1324, 1364
HspAI GCGC 1 cut(s) 8
KpnI GGTACC 1 cut(s) 418
KroI GCCGGC 1 cut(s) 949
KroNI GCCGGC 1 cut(s) 951
Ksp22I TGATCA 1 cut(s) 1174
KspI CCGCGG 1 cut(s) 1352
Kzo9I GATC 5 cut(s) 332, 388, 790, 920, 1174
LmnI GCTCC 2 cut(s) 203, 1278
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 4 cut(s) 405, 537, 1156, 1354
MabI ACCWGGT 2 cut(s) 550, 877
MaeI CTAG 6 cut(s) 96, 525, 570, 609, 636, 989
MaeII ACGT 1 cut(s) 1368
MaeIII GTNAC 6 cut(s) 214, 486, 560, 595, 859, 1364
MalI GATC 5 cut(s) 334, 390, 792, 922, 1176
MboI GATC 5 cut(s) 332, 388, 790, 920, 1174
MboII GAAGA 4 cut(s) 52, 444, 522, 1112
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 2 cut(s) 790, 920
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 5 cut(s) 180, 336, 682, 895, 1431
MlyI GAGTC 2 cut(s) 211, 1053
MmeI TCCRAC 2 cut(s) 424, 953
Mph1103I ATGCAT 1 cut(s) 1171
MroNI GCCGGC 1 cut(s) 949
MroXI GAANNNNTTC 1 cut(s) 740
MseI TTAA 3 cut(s) 36, 153, 996
MslI CAYNNNNRTG 3 cut(s) 1008, 1289, 1359
MspA1I CMGCKG 1 cut(s) 1351
MspI CCGG 3 cut(s) 753, 950, 1190
MspR9I CCNGG 4 cut(s) 237, 276, 552, 879
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 2 cut(s) 312, 1330
MvaI CCWGG 4 cut(s) 237, 276, 552, 879
MvnI CGCG 1 cut(s) 1351
MwoI GCNNNNNNNGC 6 cut(s) 92, 653, 950, 998, 1351, 1357
NaeI GCCGGC 1 cut(s) 951
NcoI CCATGG 1 cut(s) 191
NdeII GATC 5 cut(s) 332, 388, 790, 920, 1174
NgoMIV GCCGGC 1 cut(s) 949
NlaIII CATG 5 cut(s) 195, 296, 440, 1324, 1364
NlaIV GGNNCC 4 cut(s) 205, 416, 480, 1274
NmuCI GTSAC 5 cut(s) 214, 486, 595, 859, 1364
NsiI ATGCAT 1 cut(s) 1171
NspI RCATGY 1 cut(s) 440
OliI CACNNNNGTG 1 cut(s) 1289
PceI AGGCCT 1 cut(s) 274
PctI GAATGC 2 cut(s) 312, 1330
PdiI GCCGGC 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 3 cut(s) 79, 362, 513
PflFI GACNNNGTC 1 cut(s) 1043
PkrI GCNGC 2 cut(s) 29, 1353
PleI GAGTC 2 cut(s) 211, 1052
PpsI GAGTC 2 cut(s) 211, 1052
PshAI GACNNNNGTC 1 cut(s) 602
Psp6I CCWGG 4 cut(s) 235, 274, 550, 877
PspGI CCWGG 4 cut(s) 235, 274, 550, 877
PspN4I GGNNCC 4 cut(s) 205, 416, 480, 1274
PspPI GGNCC 1 cut(s) 947
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 2 cut(s) 790, 920
PsyI GACNNNGTC 1 cut(s) 1043
RsaI GTAC 6 cut(s) 134, 290, 416, 936, 1379, 1429
RsaNI GTAC 6 cut(s) 133, 289, 415, 935, 1378, 1428
RseI CAYNNNNRTG 3 cut(s) 1008, 1289, 1359
SacII CCGCGG 1 cut(s) 1352
SaqAI TTAA 3 cut(s) 36, 153, 996
SatI GCNGC 2 cut(s) 28, 1352
Sau3AI GATC 5 cut(s) 332, 388, 790, 920, 1174
Sau96I GGNCC 1 cut(s) 947
SchI GAGTC 2 cut(s) 211, 1053
ScrFI CCNGG 4 cut(s) 237, 276, 552, 879
SduI GDGCHC 1 cut(s) 372
SexAI ACCWGGT 2 cut(s) 550, 877
SfaNI GCATC 4 cut(s) 405, 537, 1156, 1354
SfcI CTRYAG 1 cut(s) 600
Sfr303I CCGCGG 1 cut(s) 1352
SgrBI CCGCGG 1 cut(s) 1352
SmiMI CAYNNNNRTG 3 cut(s) 1008, 1289, 1359
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 5 cut(s) 180, 336, 682, 895, 1431
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 4 cut(s) 440, 1187, 1349, 1351
SspI AATATT 1 cut(s) 231
SspMI CTAG 6 cut(s) 96, 525, 570, 609, 636, 989
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 4 cut(s) 235, 274, 550, 877
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 4 cut(s) 601, 691, 934, 1291
TaiI ACGT 1 cut(s) 1371
TaqI TCGA 4 cut(s) 174, 340, 391, 622
TasI AATT 5 cut(s) 180, 336, 682, 895, 1431
TatI WGTACW 2 cut(s) 132, 1427
TauI GCSGC 1 cut(s) 1354
TfiI GAWTC 3 cut(s) 79, 362, 513
Tru1I TTAA 3 cut(s) 36, 153, 996
Tru9I TTAA 3 cut(s) 36, 153, 996
TscAI CASTG 5 cut(s) 93, 600, 696, 1168, 1296
TseFI GTSAC 5 cut(s) 214, 486, 595, 859, 1364
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 5 cut(s) 214, 486, 595, 859, 1364
TspDTI ATGAA 3 cut(s) 447, 733, 1337
TspRI CASTG 5 cut(s) 93, 600, 696, 1168, 1296
Tth111I GACNNNGTC 1 cut(s) 1043
XceI RCATGY 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 783
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 6 cut(s) 96, 525, 570, 609, 636, 989
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.