Rw5G015570

L-ascorbate oxidase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
19337499 .. 19339943
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015570.1

Sequence Viewer

Length: 1698 bp
ATGGTTAAGATTTTAGAATTACACAGAGCTTTGGTGAAGCTGTTGGTTGTGTGGAGTCTAATCTGTTTGGTAGCTTTTTCGACAGTTGAAGCTAGAGTTCGGCATTACAGATGGAATGTGAATTATGAGTACAAATCTCCAGACTGCTTTCAGAAGCTAGTTATAACCATCAATGGAGGAACCCCAGGACCAACAATATTGGCTCAGCAGGGTGATACAATTGTAGTTGAGCTCAAGAACAGCTTGTTAACCGAGAATATAGCTATCCACTGGCATGGAATTCGACAGATAGGAACACCTTGGAGTGATGGAACAGAAGGTGTGACCCAATGTCCTATTTTGCCAGGAGATACCTTCAAATACAAGTTTGTTGTGGATAGGAGCAGCTGGGTTATATGGATCCATTATTGTTCACTTCCCAGTGAAGCTTCTGAGCCCTTTGCTTATGATTATGACAGAAACATTATCCTAAATGACTGGTTCCACAAAAGCACTTATGAGGAAGCTACTGGCTTGTCCTCCATTCCCTTTGTTTGGATTGGGGAGCCTCAGTCACTTCTGATTAATGGAAGAGGGAGGTACAACTGCTCTCTACTAGAAAATCCAAGCCTGGAAGCCTGTAATGTGACAAATCCAGAGTGTTCTCCCCATGTTGTGACAGTAATTCCTGGCAAAACATACCGGTTAAGGATTGGTAGCTTGACTGCTCTATCAGCTCTCAGTTTTCAGATTGAGGGTCACAACTTTACTGTCGTTGAAGCTGATGGGCACTATGTGGAGCCATTTGTGACCAAAAACCTATTCATTTACTCTGGAGAGACGTACTCTATCCTAGTAAAAGCAAACCAAGACCCATCAAGAAACTATTGGATGACTACAAATGTAGTTGGCAGAGAACCTAAAACCCCAACTGGCCTAGCAATCCTCAATTATTATCCTACCCATTTCAGGAAATCCCCTGCAACAGTTCCAACCAGAGGCCCTTTTTGGAATGACACTGCACCAAGAGTAGCACAGAGTCTTGCTATTAAAGCCCTCCAAAGTTCCATTCACACCCCTCCTCTCACTTCAGACAGAACCATTGTGCTTCTCAACACCCAAAACAAGATCGATGGGTACTTCCGCTGGTCCTTGAACAATGTGTCTTTCTCTGTTCCCCACACACCTTATTTGATAGCTTTGAAGGAGAAATTGAATCTAAACAATGTGTTTGATCAAAAACCCCCTCCGGAAAACTATGACTTCAAGAACTATGATATATACAGTGTTGCCAAGAATACGAATGCTACTTCAAGCAATGGCTTATACAGGTTGAAGTTCAATAGCACAGTGGATGTTGTACTGCAAAATGCCAACACTATGACTGCAAACAACAGTGAGACACATCCATGGCATCTCCATGGTCACGACTTTTGGGTGTTGGGATATGGAACAGGAAAGTTTGACGTTACAAAAGATGTGGCAAAATACAATCTTGTCAATCCGATCATGAAGAACACGGTGCCAATACACCCTTATGGTTGGACTGCTTTGAGATTTCAAGCAGATAATCCAGGTGTTTGGGCATTTCATTGCCATATAGAGTCCCATTTCTATATGGGAATGGGAGTGGTTTTTGAATCTGGGGTGGAGAAGGTGGGAAAGCTGCCATCTTCTATCATGGGTTGTGGAGAAACAAAAGGCTTTCATAGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

565

Amino Acids

63.75

Weight (kDa)

7.98

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 40 - 135 9.5e-29 Multicopper oxidase
Cu-oxidase PF00394 155 - 312 4.3e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 416 - 541 1.1e-37 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 1501
AccIII TCCGGA 1 cut(s) 1228
AciI CCGC 1 cut(s) 1123
AclWI GGATC 2 cut(s) 394, 407
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 1053
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 5 cut(s) 131, 581, 824, 1118, 1341
AfiI CCNNNNNNNGG 3 cut(s) 534, 948, 977
AgeI ACCGGT 1 cut(s) 681
AhdI GACNNNNNGTC 1 cut(s) 330
AjnI CCWGG 5 cut(s) 184, 343, 609, 667, 1552
AjuI GAANNNNNNNTTGG 4 cut(s) 785, 817, 1032, 1064
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 2 cut(s) 812, 1373
AlwI GGATC 2 cut(s) 394, 407
Aor13HI TCCGGA 1 cut(s) 1228
AoxI GGCC 3 cut(s) 913, 979, 1691
ApeKI GCWGC 2 cut(s) 384, 1645
ApoI RAATTY 1 cut(s) 279
AseI ATTAAT 1 cut(s) 564
AsiGI ACCGGT 1 cut(s) 681
AspS9I GGNCC 3 cut(s) 188, 980, 1128
AsuHPI GGTGA 2 cut(s) 46, 224
AvaII GGWCC 2 cut(s) 188, 1128
BaeGI GKGCMC 1 cut(s) 771
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BamHI GGATCC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 1501
BanII GRGCYC 2 cut(s) 234, 438
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 396, 1632
BccI CCATC 7 cut(s) 105, 176, 302, 758, 862, 1106, 1657
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 5 cut(s) 186, 345, 611, 669, 1554
BclI TGATCA 1 cut(s) 1213
BcoDI GTCTC 2 cut(s) 812, 1373
BfaI CTAG 5 cut(s) 93, 158, 596, 833, 917
BisI GCNGC 2 cut(s) 385, 1646
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 2 cut(s) 386, 1647
Bme1390I CCNGG 5 cut(s) 186, 345, 611, 669, 1554
Bme18I GGWCC 2 cut(s) 188, 1128
BmeRI GACNNNNNGTC 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 188, 980, 1128
BmiI GGNNCC 6 cut(s) 181, 401, 482, 546, 780, 1503
BmrFI CCNGG 5 cut(s) 186, 345, 611, 669, 1554
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 1402
BmuI ACTGGG 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 2 cut(s) 123, 834
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 1110
BsaJI CCNNGG 4 cut(s) 184, 299, 1388, 1399
BsaWI WCCGGW 2 cut(s) 681, 1228
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 3 cut(s) 534, 948, 977
Bse118I RCCGGY 1 cut(s) 681
Bse1I ACTGG 5 cut(s) 275, 420, 482, 514, 916
Bse3DI GCAATG 2 cut(s) 1303, 1570
BseAI TCCGGA 1 cut(s) 1228
BseBI CCWGG 5 cut(s) 186, 345, 611, 669, 1554
BseCI ATCGAT 1 cut(s) 1110
BseDI CCNNGG 4 cut(s) 184, 299, 1388, 1399
BseGI GGATG 3 cut(s) 876, 1339, 1384
BseLI CCNNNNNNNGG 3 cut(s) 534, 948, 977
BseMI GCAATG 2 cut(s) 1303, 1570
BseMII CTCAG 4 cut(s) 218, 423, 563, 733
BseNI ACTGG 5 cut(s) 275, 420, 482, 514, 916
BseRI GAGGAG 1 cut(s) 1050
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 2 cut(s) 396, 1632
BseYI CCCAGC 1 cut(s) 387
BsgI GTGCAG 1 cut(s) 984
BshFI GGCC 3 cut(s) 915, 981, 1693
BshNI GGYRCC 1 cut(s) 1501
BshTI ACCGGT 1 cut(s) 681
BshVI ATCGAT 1 cut(s) 1110
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 682, 1229
BslFI GGGAC 1 cut(s) 1570
BslI CCNNNNNNNGG 3 cut(s) 534, 948, 977
BsmAI GTCTC 2 cut(s) 812, 1373
BsmBI CGTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 1570
BsmI GAATGC 1 cut(s) 1288
BsnI GGCC 3 cut(s) 915, 981, 1693
Bsp1286I GDGCHC 3 cut(s) 234, 438, 771
Bsp13I TCCGGA 1 cut(s) 1228
Bsp143I GATC 4 cut(s) 399, 1107, 1213, 1485
Bsp1720I GCTNAGC 1 cut(s) 204
Bsp19I CCATGG 2 cut(s) 1388, 1399
BspACI CCGC 1 cut(s) 1123
BspANI GGCC 3 cut(s) 915, 981, 1693
BspCNI CTCAG 4 cut(s) 217, 424, 562, 732
BspDI ATCGAT 1 cut(s) 1110
BspEI TCCGGA 1 cut(s) 1228
BspHI TCATGA 1 cut(s) 1488
BspLI GGNNCC 6 cut(s) 181, 401, 482, 546, 780, 1503
BspPI GGATC 2 cut(s) 394, 407
BspT107I GGYRCC 1 cut(s) 1501
BsrDI GCAATG 2 cut(s) 1303, 1570
BsrFI RCCGGY 1 cut(s) 681
BsrI ACTGG 5 cut(s) 275, 420, 482, 514, 916
BssAI RCCGGY 1 cut(s) 681
BssECI CCNNGG 4 cut(s) 184, 299, 1388, 1399
BssMI GATC 4 cut(s) 399, 1107, 1213, 1485
BssT1I CCWWGG 3 cut(s) 299, 1388, 1399
Bst2UI CCWGG 5 cut(s) 186, 345, 611, 669, 1554
Bst4CI ACNGT 8 cut(s) 85, 661, 751, 967, 1265, 1330, 1376, 1501
Bst6I CTCTTC 1 cut(s) 565
BstDEI CTNAG 4 cut(s) 204, 432, 549, 719
BstDSI CCRYGG 2 cut(s) 1388, 1399
BstF5I GGATG 3 cut(s) 876, 1339, 1384
BstKTI GATC 4 cut(s) 402, 1110, 1216, 1488
BstMAI GTCTC 2 cut(s) 812, 1373
BstMBI GATC 4 cut(s) 399, 1107, 1213, 1485
BstMWI GCNNNNNNNGC 2 cut(s) 713, 1031
BstNI CCWGG 5 cut(s) 186, 345, 611, 669, 1554
BstSCI CCNGG 5 cut(s) 184, 343, 609, 667, 1552
BstSLI GKGCMC 1 cut(s) 771
BstV1I GCAGC 2 cut(s) 396, 1632
BstX2I RGATCY 1 cut(s) 399
BstXI CCANNNNNNTGG 2 cut(s) 275, 1560
BstYI RGATCY 1 cut(s) 399
Bsu15I ATCGAT 1 cut(s) 1110
BsuRI GGCC 3 cut(s) 915, 981, 1693
BsuTUI ATCGAT 1 cut(s) 1110
BtgI CCRYGG 2 cut(s) 1388, 1399
BtsCI GGATG 3 cut(s) 876, 1339, 1384
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 6 cut(s) 268, 427, 996, 1270, 1335, 1381
CciI TCATGA 1 cut(s) 1488
Cfr10I RCCGGY 1 cut(s) 681
Cfr13I GGNCC 3 cut(s) 188, 980, 1128
ClaI ATCGAT 1 cut(s) 1110
Csp6I GTAC 5 cut(s) 130, 580, 823, 1117, 1340
CspAI ACCGGT 1 cut(s) 681
CspCI CAANNNNNGTGG 2 cut(s) 1440, 1475
CviAII CATG 6 cut(s) 275, 650, 1389, 1400, 1489, 1660
CviQI GTAC 5 cut(s) 130, 580, 823, 1117, 1340
DdeI CTNAG 4 cut(s) 204, 432, 549, 719
DpnI GATC 4 cut(s) 401, 1109, 1215, 1487
DpnII GATC 4 cut(s) 399, 1107, 1213, 1485
DraIII CACNNNGTG 1 cut(s) 775
DriI GACNNNNNGTC 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 565
Eam1105I GACNNNNNGTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 565
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 3 cut(s) 299, 1388, 1399
Eco24I GRGCYC 2 cut(s) 234, 438
Eco47I GGWCC 2 cut(s) 188, 1128
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 1053
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 980
EcoRI GAATTC 1 cut(s) 279
EcoRII CCWGG 5 cut(s) 184, 343, 609, 667, 1552
EcoT14I CCWWGG 3 cut(s) 299, 1388, 1399
EcoT38I GRGCYC 2 cut(s) 234, 438
ErhI CCWWGG 3 cut(s) 299, 1388, 1399
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 6 cut(s) 278, 653, 1392, 1403, 1492, 1663
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 1 cut(s) 1570
FatI CATG 6 cut(s) 274, 649, 1388, 1399, 1488, 1659
FbaI TGATCA 1 cut(s) 1213
Fnu4HI GCNGC 2 cut(s) 385, 1646
FokI GGATG 3 cut(s) 883, 1346, 1371
FriOI GRGCYC 2 cut(s) 234, 438
Fsp4HI GCNGC 2 cut(s) 385, 1646
FspBI CTAG 5 cut(s) 93, 158, 596, 833, 917
GluI GCNGC 2 cut(s) 385, 1646
GsaI CCCAGC 1 cut(s) 391
GsuI CTGGAG 2 cut(s) 123, 834
HaeIII GGCC 3 cut(s) 915, 981, 1693
HapII CCGG 2 cut(s) 682, 1229
Hin1II CATG 6 cut(s) 278, 653, 1392, 1403, 1492, 1663
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 5 cut(s) 55, 1018, 1195, 1583, 1619
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 2 cut(s) 682, 1229
HphI GGTGA 2 cut(s) 46, 224
Hpy166II GTNNAC 2 cut(s) 249, 413
Hpy188I TCNGA 6 cut(s) 153, 433, 561, 729, 1072, 1485
Hpy8I GTNNAC 2 cut(s) 249, 413
HpyAV CCTTC 4 cut(s) 311, 364, 1177, 1627
HpyCH4III ACNGT 8 cut(s) 85, 661, 751, 967, 1265, 1330, 1376, 1501
HpyCH4IV ACGT 2 cut(s) 821, 1446
HpyCH4V TGCA 4 cut(s) 962, 1001, 1345, 1367
HpyF10VI GCNNNNNNNGC 2 cut(s) 713, 1031
HpyF3I CTNAG 4 cut(s) 204, 432, 549, 719
HpySE526I ACGT 2 cut(s) 821, 1446
Hsp92II CATG 6 cut(s) 278, 653, 1392, 1403, 1492, 1663
Kpn2I TCCGGA 1 cut(s) 1228
Ksp22I TGATCA 1 cut(s) 1213
KspAI GTTAAC 1 cut(s) 249
Kzo9I GATC 4 cut(s) 399, 1107, 1213, 1485
LmnI GCTCC 3 cut(s) 381, 544, 778
Lsp1109I GCAGC 2 cut(s) 396, 1632
LweI GCATC 1 cut(s) 1402
MaeI CTAG 5 cut(s) 93, 158, 596, 833, 917
MaeII ACGT 2 cut(s) 821, 1446
MaeIII GTNAC 8 cut(s) 322, 552, 625, 655, 737, 787, 1403, 1447
MalI GATC 4 cut(s) 401, 1109, 1215, 1487
MboI GATC 4 cut(s) 399, 1107, 1213, 1485
MboII GAAGA 3 cut(s) 582, 1504, 1644
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 3 cut(s) 234, 438, 771
MluCI AATT 7 cut(s) 17, 121, 219, 279, 663, 928, 1190
MlyI GAGTC 3 cut(s) 64, 1027, 1592
MmeI TCCRAC 2 cut(s) 995, 1502
MroI TCCGGA 1 cut(s) 1228
MseI TTAA 5 cut(s) 6, 248, 564, 686, 1029
MslI CAYNNNNRTG 4 cut(s) 273, 1387, 1398, 1515
MspA1I CMGCKG 2 cut(s) 387, 1125
MspI CCGG 2 cut(s) 682, 1229
MspR9I CCNGG 5 cut(s) 186, 345, 611, 669, 1554
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 1288
MvaI CCWGG 5 cut(s) 186, 345, 611, 669, 1554
MwoI GCNNNNNNNGC 2 cut(s) 713, 1031
NcoI CCATGG 2 cut(s) 1388, 1399
NdeII GATC 4 cut(s) 399, 1107, 1213, 1485
NlaIII CATG 6 cut(s) 278, 653, 1392, 1403, 1492, 1663
NlaIV GGNNCC 6 cut(s) 181, 401, 482, 546, 780, 1503
NmuCI GTSAC 7 cut(s) 322, 552, 625, 655, 737, 787, 1403
PagI TCATGA 1 cut(s) 1488
PctI GAATGC 1 cut(s) 1288
PfeI GAWTC 2 cut(s) 1195, 1619
PinAI ACCGGT 1 cut(s) 681
PkrI GCNGC 2 cut(s) 386, 1647
PleI GAGTC 3 cut(s) 63, 1026, 1591
PpsI GAGTC 3 cut(s) 63, 1026, 1591
PshBI ATTAAT 1 cut(s) 564
PsiI TTATAA 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 5 cut(s) 184, 343, 609, 667, 1552
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 5 cut(s) 184, 343, 609, 667, 1552
PspN4I GGNNCC 6 cut(s) 181, 401, 482, 546, 780, 1503
PspPI GGNCC 3 cut(s) 188, 980, 1128
PsuI RGATCY 1 cut(s) 399
PvuII CAGCTG 1 cut(s) 387
RsaI GTAC 5 cut(s) 131, 581, 824, 1118, 1341
RsaNI GTAC 5 cut(s) 130, 580, 823, 1117, 1340
RseI CAYNNNNRTG 4 cut(s) 273, 1387, 1398, 1515
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 5 cut(s) 6, 248, 564, 686, 1029
SatI GCNGC 2 cut(s) 385, 1646
Sau3AI GATC 4 cut(s) 399, 1107, 1213, 1485
Sau96I GGNCC 3 cut(s) 188, 980, 1128
SchI GAGTC 3 cut(s) 64, 1027, 1592
ScrFI CCNGG 5 cut(s) 186, 345, 611, 669, 1554
SduI GDGCHC 3 cut(s) 234, 438, 771
SfaNI GCATC 1 cut(s) 1402
SinI GGWCC 2 cut(s) 188, 1128
SmiMI CAYNNNNRTG 4 cut(s) 273, 1387, 1398, 1515
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 7 cut(s) 17, 121, 219, 279, 663, 928, 1190
SsiI CCGC 1 cut(s) 1123
SspI AATATT 1 cut(s) 198
SspMI CTAG 5 cut(s) 93, 158, 596, 833, 917
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 5 cut(s) 184, 343, 609, 667, 1552
StyI CCWWGG 3 cut(s) 299, 1388, 1399
TaaI ACNGT 8 cut(s) 85, 661, 751, 967, 1265, 1330, 1376, 1501
TaiI ACGT 2 cut(s) 824, 1449
TaqI TCGA 3 cut(s) 80, 283, 1110
TasI AATT 7 cut(s) 17, 121, 219, 279, 663, 928, 1190
TatI WGTACW 2 cut(s) 129, 1339
TfiI GAWTC 2 cut(s) 1195, 1619
Tru1I TTAA 5 cut(s) 6, 248, 564, 686, 1029
Tru9I TTAA 5 cut(s) 6, 248, 564, 686, 1029
TscAI CASTG 6 cut(s) 275, 427, 1003, 1270, 1335, 1381
TseFI GTSAC 7 cut(s) 322, 552, 625, 655, 737, 787, 1403
TseI GCWGC 2 cut(s) 384, 1645
Tsp45I GTSAC 7 cut(s) 322, 552, 625, 655, 737, 787, 1403
TspDTI ATGAA 4 cut(s) 793, 1505, 1559, 1676
TspRI CASTG 6 cut(s) 275, 427, 1003, 1270, 1335, 1381
VpaK11BI GGWCC 2 cut(s) 188, 1128
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 1 cut(s) 279
XspI CTAG 5 cut(s) 93, 158, 596, 833, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.