Rroxscaffold_2G00129120

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
64960638 .. 64963349
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129120.1

Sequence Viewer

Length: 1683 bp
ATGGTTGCGCTTTTACAGAGAAATAGCTGTATTTTTGAGTTATTGGGTTTGTGTTTACTCTTCTGCTGTCTGGTTGAGATTCCAGCAGTGGAGGCTAGGATTAGGCATTACAAATTGGAGGTGAAATATGAGTACAAGTCCCCTGATTGCTTTAAGAAACTTGTTATCACCACCAACGGCAAAACTCCTGGACCAACCATACTTGCTCAGCAGGGAGACACTGTCGTCGTCGAGCTAAAGAATAGTTTGTTAACAGAAAATGTAGCCATACATTGGCATGGTATCAGACAGCCTGGAACTTATCTGTACCATGCTCACTATGGAATGCAAAGAGAAGCAGGCTTATTTGGATCAATTCGAGTAGCGCTTCCTGAAGGAGAATCCGAGCCCTTCCTCTATGATTATGATCGAAGCATCATACTCAGTGATTGGTACCATAGAAGCACTTATGAACACGCAGTAGGACTATCTTCCAATCCTTTTGTCTGGGTTGGGGAACCTCAGTCACTTTTGATACAAGGCAAAGGAAGATTCAACTGCTCTAGCATCGCTACTTCAAGCTTAGAACCTGGTGTTTGTAACACAAGTAGTCCTGACTGCGCTCCTTATGCAGTAACTGTAGTCCCTGGCAAAACTTATCGACTAAGGATTGCTAGTTTGACTGCTCTATCAGCCCTCAGTTTCCAAATAGAGGGTCATAATTTGACAGTGGTTGAAGCAGATGGGCATTATGTAGAGCCATTTGTTGTAAAGAACCTGTTCATATATTCCGGTGAGACATATTCGGTTCTAATAAAAGCAGACCAAGACCCTTCAAGAAACTATTGGATGACAACCAACATTGTTAGCCGAAATGCCACCACCACCAACACCCTTAATGTCACCACCACCACCGCACCTGGTTTAGCCTTTCTGAATTACTATCCTAACCATCCTCGAAGATCTCCTCCAACAGTACCACCAGCAGGGCCGGCCTGGAATGATGTTGAGCCCCGACTAAATCAAAGTCTCGCCATTAAGGCACACCGAGATTTCATTCACACCCCTCCCCAAACCCCAGACAGAGTCATTGTTTTCCTCAACACCCAAAACAAGATAAATGGTAATACTCGCTGGTCAGTGAATAATGTCTCATTCACTCTTCCTCACACACCTTACCTCATTGCACTTCAACAAAACCTCACTGATGCATTTGATCAAACACCTCCGCCGGAAGGGTATGACTTTGTGAACTATGACATCTACAAAAAGGCAAACAACAGCAATGCTACAACAAGTGATGGGATTTACAGGCTCCAGTTCAACACAACAGTGGACATAATCCTGCAAAATGCAAACACCATGACTGTGAACAACAGCGAGACGCATCCGTGGCATTTGCATGGTCACGATTTTTGGGTACTCGGATATGGGAAAGGAAAGTTTGACATCAACAATAACCCAAAGAAGTACAATTTGGTGAATCCTATCATGAAGAACACTGTGCCTGTTCATCCATACGGTTGGACAGCTTTGAGGTTCAGGGCAGATAATCCAGGTGTGTGGGCTTTCCATTGCCATATTGAGTCTCATTTCTATATGGGAATGGGTGTGGTGTTTGCAGAAGGAATAGACAGGTTGGGAAACTTGCCTTCATCTATAATGGGGTGTGGTGAAACAAAAGGAGTAATGCACAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

62.79

Weight (kDa)

7.07

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 41 - 100 5.1e-15 Multicopper oxidase
Cu-oxidase PF00394 138 - 297 2.7e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 416 - 536 1.1e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
Acc65I GGTACC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 432
AccB7I CCANNNNNTGG 1 cut(s) 273
AciI CCGC 2 cut(s) 894, 1208
AclWI GGATC 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 6 cut(s) 134, 308, 434, 957, 1401, 1451
AfeI AGCGCT 1 cut(s) 366
AfiI CCNNNNNNNGG 4 cut(s) 273, 691, 965, 1214
AgsI TTSAA 6 cut(s) 535, 558, 716, 816, 1172, 1303
AjnI CCWGG 7 cut(s) 187, 292, 568, 625, 898, 974, 1534
AjuI GAANNNNNNNTTGG 2 cut(s) 1439, 1471
AleI CACNNNNGTG 1 cut(s) 1310
AluBI AGCT 4 cut(s) 27, 235, 561, 1511
AluI AGCT 4 cut(s) 27, 235, 561, 1511
Alw26I GTCTC 6 cut(s) 210, 770, 1013, 1135, 1355, 1572
AlwI GGATC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 617
Aor51HI AGCGCT 1 cut(s) 366
AoxI GGCC 2 cut(s) 968, 972
ArsI GACNNNNNNTTYG 2 cut(s) 679, 711
Asp700I GAANNNNTTC 1 cut(s) 758
Asp718I GGTACC 1 cut(s) 432
AspLEI GCGC 3 cut(s) 10, 367, 602
AspS9I GGNCC 2 cut(s) 191, 968
AsuHPI GGTGA 6 cut(s) 133, 160, 785, 874, 1471, 1664
AvaII GGWCC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 432
BanII GRGCYC 2 cut(s) 390, 993
BccI CCATC 3 cut(s) 716, 939, 1274
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
BclI TGATCA 1 cut(s) 1195
BcoDI GTCTC 6 cut(s) 210, 770, 1013, 1135, 1355, 1572
BfaI CTAG 3 cut(s) 96, 543, 654
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 1019
BglII AGATCT 1 cut(s) 941
BlpI GCTNAGC 1 cut(s) 207
Bme1390I CCNGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 191, 968
BmiI GGNNCC 3 cut(s) 434, 498, 1295
BmrFI CCNGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
BmsI GCATC 4 cut(s) 423, 555, 1177, 1375
BpmI CTGGAG 1 cut(s) 1280
Bpu1102I GCTNAGC 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 625, 1370
BsaWI WCCGGW 1 cut(s) 770
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 691, 965, 1214
Bse118I RCCGGY 1 cut(s) 970
Bse1I ACTGG 1 cut(s) 1297
Bse3DI GCAATG 3 cut(s) 1161, 1270, 1552
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
BseDI CCNNGG 2 cut(s) 625, 1370
BseGI GGATG 4 cut(s) 834, 931, 1366, 1492
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 4 cut(s) 273, 691, 965, 1214
BseMI GCAATG 3 cut(s) 1161, 1270, 1552
BseMII CTCAG 4 cut(s) 221, 436, 515, 691
BseNI ACTGG 1 cut(s) 1297
BseRI GAGGAG 1 cut(s) 936
BshFI GGCC 2 cut(s) 970, 974
BshNI GGYRCC 1 cut(s) 432
BsiSI CCGG 3 cut(s) 771, 971, 1211
BslFI GGGAC 2 cut(s) 124, 608
BslI CCNNNNNNNGG 4 cut(s) 273, 691, 965, 1214
BsmAI GTCTC 6 cut(s) 210, 770, 1013, 1135, 1355, 1572
BsmBI CGTCTC 1 cut(s) 1355
BsmFI GGGAC 2 cut(s) 124, 608
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 970, 974
Bsp1286I GDGCHC 2 cut(s) 390, 993
Bsp143I GATC 4 cut(s) 350, 406, 941, 1195
Bsp1720I GCTNAGC 1 cut(s) 207
BspACI CCGC 2 cut(s) 894, 1208
BspANI GGCC 2 cut(s) 970, 974
BspCNI CTCAG 4 cut(s) 220, 435, 514, 690
BspHI TCATGA 1 cut(s) 1470
BspLI GGNNCC 3 cut(s) 434, 498, 1295
BspPI GGATC 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 432
BsrDI GCAATG 3 cut(s) 1161, 1270, 1552
BsrFI RCCGGY 1 cut(s) 970
BsrI ACTGG 1 cut(s) 1297
BssAI RCCGGY 1 cut(s) 970
BssECI CCNNGG 2 cut(s) 625, 1370
BssMI GATC 4 cut(s) 350, 406, 941, 1195
Bst2UI CCWGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
Bst4CI ACNGT 8 cut(s) 223, 619, 709, 955, 1312, 1348, 1483, 1502
Bst6I CTCTTC 2 cut(s) 65, 1146
BstC8I GCNNGC 2 cut(s) 340, 972
BstDEI CTNAG 6 cut(s) 207, 422, 501, 562, 644, 677
BstDSI CCRYGG 1 cut(s) 1370
BstF5I GGATG 4 cut(s) 834, 931, 1366, 1492
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 3 cut(s) 10, 367, 602
BstKTI GATC 4 cut(s) 353, 409, 944, 1198
BstMAI GTCTC 6 cut(s) 210, 770, 1013, 1135, 1355, 1572
BstMBI GATC 4 cut(s) 350, 406, 941, 1195
BstMWI GCNNNNNNNGC 6 cut(s) 92, 608, 671, 971, 1019, 1372
BstNI CCWGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
BstSCI CCNGG 7 cut(s) 187, 292, 568, 625, 898, 974, 1534
BstSFI CTRYAG 1 cut(s) 618
BstX2I RGATCY 1 cut(s) 941
BstXI CCANNNNNNTGG 2 cut(s) 1503, 1542
BstYI RGATCY 1 cut(s) 941
BsuRI GGCC 2 cut(s) 970, 974
BtgI CCRYGG 1 cut(s) 1370
BtgZI GCGATG 1 cut(s) 532
BtsCI GGATG 4 cut(s) 834, 931, 1366, 1492
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 8 cut(s) 93, 219, 430, 714, 1125, 1182, 1317, 1479
Cac8I GCNNGC 2 cut(s) 340, 972
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 1470
CfoI GCGC 3 cut(s) 10, 367, 602
Cfr10I RCCGGY 1 cut(s) 970
Cfr13I GGNCC 2 cut(s) 191, 968
CseI GACGC 1 cut(s) 1372
CsiI ACCWGGT 2 cut(s) 568, 898
Csp6I GTAC 6 cut(s) 133, 307, 433, 956, 1400, 1450
CviAII CATG 5 cut(s) 278, 311, 1342, 1382, 1471
CviQI GTAC 6 cut(s) 133, 307, 433, 956, 1400, 1450
DdeI CTNAG 6 cut(s) 207, 422, 501, 562, 644, 677
DpnI GATC 4 cut(s) 352, 408, 943, 1197
DpnII GATC 4 cut(s) 350, 406, 941, 1195
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 2 cut(s) 65, 1146
EarI CTCTTC 2 cut(s) 65, 1146
EciI GGCGGA 1 cut(s) 1197
Eco24I GRGCYC 2 cut(s) 390, 993
Eco47I GGWCC 1 cut(s) 191
Eco47III AGCGCT 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 393
EcoRII CCWGG 7 cut(s) 187, 292, 568, 625, 898, 974, 1534
EcoT22I ATGCAT 1 cut(s) 1192
EcoT38I GRGCYC 2 cut(s) 390, 993
Esp3I CGTCTC 1 cut(s) 1355
FaeI CATG 5 cut(s) 281, 314, 1345, 1385, 1474
FaqI GGGAC 2 cut(s) 124, 608
FatI CATG 5 cut(s) 277, 310, 1341, 1381, 1470
FbaI TGATCA 1 cut(s) 1195
FokI GGATG 4 cut(s) 841, 918, 1353, 1479
FriOI GRGCYC 2 cut(s) 390, 993
FseI GGCCGGCC 1 cut(s) 974
FspBI CTAG 3 cut(s) 96, 543, 654
GlaI GCGC 3 cut(s) 9, 366, 601
GsuI CTGGAG 1 cut(s) 1280
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 2 cut(s) 970, 974
HapII CCGG 3 cut(s) 771, 971, 1211
HgaI GACGC 1 cut(s) 1372
HhaI GCGC 3 cut(s) 10, 367, 602
Hin1II CATG 5 cut(s) 281, 314, 1345, 1385, 1474
Hin6I GCGC 3 cut(s) 8, 365, 600
HinP1I GCGC 3 cut(s) 8, 365, 600
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 6 cut(s) 79, 380, 531, 1065, 1462, 1565
HpaI GTTAAC 1 cut(s) 252
HpaII CCGG 3 cut(s) 771, 971, 1211
HphI GGTGA 6 cut(s) 133, 160, 785, 874, 1471, 1664
Hpy166II GTNNAC 5 cut(s) 56, 252, 1231, 1315, 1351
Hpy188I TCNGA 4 cut(s) 287, 385, 915, 1406
Hpy188III TCNNGA 5 cut(s) 371, 593, 816, 1388, 1471
Hpy8I GTNNAC 5 cut(s) 56, 252, 1231, 1315, 1351
Hpy99I CGWCG 2 cut(s) 230, 233
HpyAV CCTTC 6 cut(s) 368, 400, 822, 1208, 1598, 1641
HpyCH4III ACNGT 8 cut(s) 223, 619, 709, 955, 1312, 1348, 1483, 1502
HpyCH4V TGCA 9 cut(s) 328, 611, 1166, 1190, 1327, 1334, 1381, 1601, 1672
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 608, 671, 971, 1019, 1372
HpyF3I CTNAG 6 cut(s) 207, 422, 501, 562, 644, 677
Hsp92II CATG 5 cut(s) 281, 314, 1345, 1385, 1474
HspAI GCGC 3 cut(s) 8, 365, 600
KpnI GGTACC 1 cut(s) 436
KroI GCCGGC 1 cut(s) 970
KroNI GCCGGC 1 cut(s) 972
Ksp22I TGATCA 1 cut(s) 1195
KspAI GTTAAC 1 cut(s) 252
Kzo9I GATC 4 cut(s) 350, 406, 941, 1195
LmnI GCTCC 2 cut(s) 607, 1299
LweI GCATC 4 cut(s) 423, 555, 1177, 1375
MabI ACCWGGT 2 cut(s) 568, 898
MaeI CTAG 3 cut(s) 96, 543, 654
MaeIII GTNAC 5 cut(s) 504, 578, 613, 880, 1385
MalI GATC 4 cut(s) 352, 408, 943, 1197
MboI GATC 4 cut(s) 350, 406, 941, 1195
MboII GAAGA 6 cut(s) 52, 462, 540, 951, 1133, 1486
MflI RGATCY 1 cut(s) 941
MhlI GDGCHC 2 cut(s) 390, 993
MluCI AATT 5 cut(s) 113, 354, 700, 916, 1453
MlyI GAGTC 2 cut(s) 1074, 1574
MmeI TCCRAC 2 cut(s) 974, 1484
Mph1103I ATGCAT 1 cut(s) 1192
MroNI GCCGGC 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 758
MseI TTAA 4 cut(s) 153, 251, 876, 1017
MslI CAYNNNNRTG 4 cut(s) 276, 1310, 1346, 1380
MspI CCGG 3 cut(s) 771, 971, 1211
MspR9I CCNGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
MwoI GCNNNNNNNGC 6 cut(s) 92, 608, 671, 971, 1019, 1372
NaeI GCCGGC 1 cut(s) 972
NdeII GATC 4 cut(s) 350, 406, 941, 1195
NgoMIV GCCGGC 1 cut(s) 970
NlaIII CATG 5 cut(s) 281, 314, 1345, 1385, 1474
NlaIV GGNNCC 3 cut(s) 434, 498, 1295
NmuCI GTSAC 3 cut(s) 504, 880, 1385
NsiI ATGCAT 1 cut(s) 1192
OliI CACNNNNGTG 1 cut(s) 1310
PagI TCATGA 1 cut(s) 1470
PctI GAATGC 1 cut(s) 330
PdiI GCCGGC 1 cut(s) 972
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 4 cut(s) 79, 380, 531, 1462
PflFI GACNNNGTC 2 cut(s) 221, 1064
PflMI CCANNNNNTGG 1 cut(s) 273
PfoI TCCNGGA 1 cut(s) 187
PleI GAGTC 2 cut(s) 1073, 1573
PpsI GAGTC 2 cut(s) 1073, 1573
Psp6I CCWGG 7 cut(s) 187, 292, 568, 625, 898, 974, 1534
PspGI CCWGG 7 cut(s) 187, 292, 568, 625, 898, 974, 1534
PspN4I GGNNCC 3 cut(s) 434, 498, 1295
PspPI GGNCC 2 cut(s) 191, 968
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 941
PsyI GACNNNGTC 2 cut(s) 221, 1064
RigI GGCCGGCC 1 cut(s) 974
RsaI GTAC 6 cut(s) 134, 308, 434, 957, 1401, 1451
RsaNI GTAC 6 cut(s) 133, 307, 433, 956, 1400, 1450
RseI CAYNNNNRTG 4 cut(s) 276, 1310, 1346, 1380
SaqAI TTAA 4 cut(s) 153, 251, 876, 1017
Sau3AI GATC 4 cut(s) 350, 406, 941, 1195
Sau96I GGNCC 2 cut(s) 191, 968
SchI GAGTC 2 cut(s) 1074, 1574
ScrFI CCNGG 7 cut(s) 189, 294, 570, 627, 900, 976, 1536
SduI GDGCHC 2 cut(s) 390, 993
SexAI ACCWGGT 2 cut(s) 568, 898
SfaNI GCATC 4 cut(s) 423, 555, 1177, 1375
SfcI CTRYAG 1 cut(s) 618
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 4 cut(s) 276, 1310, 1346, 1380
Sse9I AATT 5 cut(s) 113, 354, 700, 916, 1453
SsiI CCGC 2 cut(s) 894, 1208
SspMI CTAG 3 cut(s) 96, 543, 654
StyD4I CCNGG 7 cut(s) 187, 292, 568, 625, 898, 974, 1534
TaaI ACNGT 8 cut(s) 223, 619, 709, 955, 1312, 1348, 1483, 1502
TaqI TCGA 5 cut(s) 231, 358, 409, 640, 937
TasI AATT 5 cut(s) 113, 354, 700, 916, 1453
TatI WGTACW 2 cut(s) 132, 1449
TfiI GAWTC 4 cut(s) 79, 380, 531, 1462
Tru1I TTAA 4 cut(s) 153, 251, 876, 1017
Tru9I TTAA 4 cut(s) 153, 251, 876, 1017
TscAI CASTG 8 cut(s) 93, 226, 430, 714, 1125, 1189, 1317, 1486
TseFI GTSAC 3 cut(s) 504, 880, 1385
Tsp45I GTSAC 3 cut(s) 504, 880, 1385
TspDTI ATGAA 6 cut(s) 465, 751, 1024, 1481, 1487, 1623
TspGWI ACGGA 1 cut(s) 1359
TspRI CASTG 8 cut(s) 93, 226, 430, 714, 1125, 1189, 1317, 1486
Tth111I GACNNNGTC 2 cut(s) 221, 1064
Van91I CCANNNNNTGG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 3 cut(s) 96, 543, 654
Zsp2I ATGCAT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.