Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002022

Physical Location & Seq

Genomic Coordinates Reverse (-)

36237479 .. 36239463

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1228400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTTGAGATTTTAGAATGCAGAACTTTGGTGAAGCTGTTGGTTTTATGTCATTTGATTTTTTCGGTAGCTGTGTCGAAGGTCGAAGGTCGAATCCGGCATTACAGATGGGAGGTGAAGTATGAGTACAAATCTCCAGATTGCTTTAAGAAGCTGGTCATAACCATCAATGGGGGAACCCCAGGACCAAAAATATTGGCTCAGCAAGGTGACACAGTTGTAGTTGAGCTTAAGAACAGCTTGTTAACGGAGAATGTAGCGATCCACTGGCATGGAATTCGACAGATTGGAACACCTTGGAGTGATGGAACAGAAGGTGTGACTCAATGTCCTATTTTGCCTGGAGATATCTTCATATACAAATTTGTTGTGGATAGGGCTGGATCATATCTATACCATGCACATTATGGAATTCAAAGAGAAGCCGGGTTATATGGATCGATTATTGTATCGGTTCCTAACGGAGTTTCTGAGCCCTTTGTCTATGATTATGACAGAAGCATTATCCTTAATGACTGGTACCACAAAAGTACTTTTGAACAAGCTACTGGCTTGTCCTCCATACCTTTTGTTTGGGTTGGGGAGCCTCAGTCACTTTTGATTAATGGAAGAGGGAGATTCAACTGCTCTCTACTAGCAACTCCTAGCCTAGAAGCCGGGGTCTGTAACGCGACAAATCCTGATTGTTCTTCCTATATTCTGACAGTAATCTCCGGAAAAACATACCGATTAAGGATTAGTAGCTTGACCTCTCTATCAGCTCTAAATTTTCAAATTGAGGGTCACAATATGACTGTTGTTGAAGCCGATGGGCATTATGTGGAGCCATTTGAGATCCAAAACCTATACATTTACTCCGGCGAGACCTATTCTATCCTGGTAAAGGCAAACCAAAACCCATCAAGAAACTACTGGATGACTACAAACGTTGTTAGTCGGAAACCTGCAACCCTAACCGGCCTAGCAATCCTCAATTACTATCCAAACTACCCCAAGAAATCTCCTCCAACTCTTCCGACCGCAGGCCCCCTATGGAACGAAACTGCACAAAGATTGGCACAAAGTCTTTCACTCAAAGCCCACAAAAATTTCACTCACACTCCTCCTCTCACTTCAGACAAAGTGATTGTGCTTCTCAACACACAAAACAAGATAGATGGAGTCCACAGATGGTCCGTAAACAATGTATCTTTCTCTCTTCCCCACACACCTTACTTAGTAGCCCTAAAAGAAAATGTAAACCTAAACCGCGTTTTCGACCAAAACCCTCCTCCGGAAAACTACGACTTCGAGAACTACGACATATACAATGTTGATGCACAAAATCAGCGAAGACTTTGGTACAACAGAAAGTGTCAGGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

456

Amino Acids

51.44

Weight (kDa)

8.27

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	39 - 153	2.8e-37	Multicopper oxidase
Cu-oxidase	PF00394	167 - 328	3e-44	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39830 AT4G39830 AT4G39830 AT4G39830
fragaria_vesca	FvH4_1g21540 FvH4_1g21540 FvH4_3g14660
malus_domestica	MD05G1228400.v1.1 MD05G1229100.v1.1 MD15G1328900.v1.1
prunus_persica	Prupe.4G131900_v2.0.a1 Prupe.6G179500_v2.0.a1
pyrus_communis	pycom05g21020 pycom15g29670
rosa_chinensis	RchiOBHm_Chr2g0115431 RchiOBHm_Chr4g0415131 RchiOBHm_Chr5g0024151
rosa_laevigata	RLG00000008094 RLG00000008611 RLG00000018185 RLG00000032773
rosa_multiflora	Rmu_sc0000635.1_g000010 Rmu_sc0003748.1_g000023 Rmu_sc0004033.1_g000014 Rmu_sc0008334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055090 Rroxscaffold_1G00055690 Rroxscaffold_2G00128340 Rroxscaffold_2G00129120 Rroxscaffold_5G00358940
rosa_rugosa	Rorug02G0196700.1 Rorug04G0132500 Rorug05G0082000
rosa_samantha	Rh2BG265100 Rh2CG259300 Rh4AG192300 Rh4BG190600 Rh4DG190300 Rh5AG172600 Rh5BG169200 Rh5CG184900 Rh5DG171400
rosa_wichuraiana	Rw2G019910 Rw4G016360 Rw5G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	952
Acc65I	GGTACC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	519
AccII	CGCG	2 cut(s)	671, 1251
AccIII	TCCGGA	2 cut(s)	713, 1273
AciI	CCGC	2 cut(s)	1020, 1249
AclI	AACGTT	1 cut(s)	927
AclWI	GGATC	4 cut(s)	256, 391, 445, 829
AcsI	RAATTY	5 cut(s)	276, 362, 411, 766, 1087
AcuI	CTGAAG	1 cut(s)	1098
AfaI	GTAC	4 cut(s)	128, 521, 532, 1343
AfiI	CCNNNNNNNGG	4 cut(s)	171, 883, 1022, 1273
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	5 cut(s)	416, 539, 622, 773, 803
AhdI	GACNNNNNGTC	1 cut(s)	327
AjnI	CCWGG	3 cut(s)	181, 340, 876
AluBI	AGCT	8 cut(s)	37, 71, 154, 229, 240, 545, 744, 761
AluI	AGCT	8 cut(s)	37, 71, 154, 229, 240, 545, 744, 761
Alw26I	GTCTC	1 cut(s)	857
AlwI	GGATC	4 cut(s)	256, 391, 445, 829
Aor13HI	TCCGGA	2 cut(s)	713, 1273
AoxI	GGCC	2 cut(s)	958, 1024
ApoI	RAATTY	5 cut(s)	276, 362, 411, 766, 1087
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
AseI	ATTAAT	1 cut(s)	603
Asp718I	GGTACC	1 cut(s)	519
AspS9I	GGNCC	3 cut(s)	185, 1025, 1173
AsuC2I	CCSGG	2 cut(s)	427, 658
AsuHPI	GGTGA	3 cut(s)	43, 127, 221
AvaII	GGWCC	2 cut(s)	185, 1173
BanI	GGYRCC	1 cut(s)	519
BanII	GRGCYC	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	1339
BccI	CCATC	7 cut(s)	102, 173, 299, 803, 907, 1151, 1164
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	3 cut(s)	183, 342, 878
BcnI	CCSGG	2 cut(s)	427, 658
BcoDI	GTCTC	1 cut(s)	857
BfaI	CTAG	4 cut(s)	635, 645, 650, 962
BfrI	CTTAAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	952
BlpI	GCTNAGC	1 cut(s)	201
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	5 cut(s)	183, 342, 427, 658, 878
Bme18I	GGWCC	2 cut(s)	185, 1173
BmeRI	GACNNNNNGTC	1 cut(s)	327
BmgT120I	GGNCC	3 cut(s)	185, 1025, 1173
BmiI	GGNNCC	6 cut(s)	178, 456, 521, 585, 825, 1027
BmrFI	CCNGG	5 cut(s)	183, 342, 427, 658, 878
BmsI	GCATC	1 cut(s)	1306
BpiI	GAAGAC	1 cut(s)	1339
BpmI	CTGGAG	2 cut(s)	120, 363
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuMI	CCSGG	2 cut(s)	427, 658
Bsa29I	ATCGAT	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	181, 296, 657
BsaWI	WCCGGW	2 cut(s)	713, 1273
BsaXI	ACNNNNNCTCC	8 cut(s)	104, 134, 575, 605, 839, 869, 1084, 1114
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 883, 1022, 1273
Bse118I	RCCGGY	1 cut(s)	956
Bse1I	ACTGG	4 cut(s)	272, 521, 553, 917
BseAI	TCCGGA	2 cut(s)	713, 1273
BseBI	CCWGG	3 cut(s)	183, 342, 878
BseCI	ATCGAT	1 cut(s)	440
BseDI	CCNNGG	3 cut(s)	181, 296, 657
BseGI	GGATG	1 cut(s)	921
BseLI	CCNNNNNNNGG	4 cut(s)	171, 883, 1022, 1273
BseMII	CTCAG	3 cut(s)	215, 462, 602
BseNI	ACTGG	4 cut(s)	272, 521, 553, 917
BseRI	GAGGAG	4 cut(s)	993, 1092, 1095, 1260
BsgI	GTGCAG	1 cut(s)	1029
Bsh1236I	CGCG	2 cut(s)	671, 1251
Bsh1285I	CGRYCG	1 cut(s)	1020
BshFI	GGCC	2 cut(s)	960, 1026
BshNI	GGYRCC	1 cut(s)	519
BshVI	ATCGAT	1 cut(s)	440
BsiEI	CGRYCG	1 cut(s)	1020
BsiSI	CCGG	7 cut(s)	97, 426, 657, 714, 858, 957, 1274
BslI	CCNNNNNNNGG	4 cut(s)	171, 883, 1022, 1273
BsmAI	GTCTC	1 cut(s)	857
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	960, 1026
Bso31I	GGTCTC	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp13I	TCCGGA	2 cut(s)	713, 1273
Bsp143I	GATC	4 cut(s)	261, 383, 437, 834
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	1020, 1249
BspANI	GGCC	2 cut(s)	960, 1026
BspCNI	CTCAG	3 cut(s)	214, 463, 601
BspDI	ATCGAT	1 cut(s)	440
BspEI	TCCGGA	2 cut(s)	713, 1273
BspFNI	CGCG	2 cut(s)	671, 1251
BspLI	GGNNCC	6 cut(s)	178, 456, 521, 585, 825, 1027
BspMI	ACCTGC	1 cut(s)	952
BspPI	GGATC	4 cut(s)	256, 391, 445, 829
BspT107I	GGYRCC	1 cut(s)	519
BspTI	CTTAAG	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	956
BsrI	ACTGG	4 cut(s)	272, 521, 553, 917
BssAI	RCCGGY	1 cut(s)	956
BssECI	CCNNGG	3 cut(s)	181, 296, 657
BssMI	GATC	4 cut(s)	261, 383, 437, 834
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	3 cut(s)	183, 342, 878
Bst4CI	ACNGT	3 cut(s)	217, 706, 796
Bst6I	CTCTTC	3 cut(s)	604, 1017, 1203
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	1024
BstDEI	CTNAG	4 cut(s)	201, 471, 588, 1216
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	1 cut(s)	921
BstFNI	CGCG	2 cut(s)	671, 1251
BstKTI	GATC	4 cut(s)	264, 386, 440, 837
BstMAI	GTCTC	1 cut(s)	857
BstMBI	GATC	4 cut(s)	261, 383, 437, 834
BstMCI	CGRYCG	1 cut(s)	1020
BstNI	CCWGG	3 cut(s)	183, 342, 878
BstSCI	CCNGG	5 cut(s)	181, 340, 425, 656, 876
BstUI	CGCG	2 cut(s)	671, 1251
BstV2I	GAAGAC	1 cut(s)	1339
BstX2I	RGATCY	1 cut(s)	834
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	834
Bsu15I	ATCGAT	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	960, 1026
BsuTUI	ATCGAT	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	921
BtsIMutI	CAGTG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	952
Cac8I	GCNNGC	1 cut(s)	1024
Cfr10I	RCCGGY	1 cut(s)	956
Cfr13I	GGNCC	3 cut(s)	185, 1025, 1173
ClaI	ATCGAT	1 cut(s)	440
Csp6I	GTAC	4 cut(s)	127, 520, 531, 1342
CviAII	CATG	2 cut(s)	272, 398
CviQI	GTAC	4 cut(s)	127, 520, 531, 1342
DdeI	CTNAG	4 cut(s)	201, 471, 588, 1216
DpnI	GATC	4 cut(s)	263, 385, 439, 836
DpnII	GATC	4 cut(s)	261, 383, 437, 834
DriI	GACNNNNNGTC	1 cut(s)	327
Eam1104I	CTCTTC	3 cut(s)	604, 1017, 1203
Eam1105I	GACNNNNNGTC	1 cut(s)	327
EarI	CTCTTC	3 cut(s)	604, 1017, 1203
Eco130I	CCWWGG	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	857
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	2 cut(s)	185, 1173
Eco57I	CTGAAG	1 cut(s)	1098
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoO109I	RGGNCCY	1 cut(s)	1025
EcoRI	GAATTC	2 cut(s)	276, 411
EcoRII	CCWGG	3 cut(s)	181, 340, 876
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	275, 401
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FatI	CATG	2 cut(s)	271, 397
FokI	GGATG	1 cut(s)	928
FriOI	GRGCYC	1 cut(s)	477
FspBI	CTAG	4 cut(s)	635, 645, 650, 962
GsuI	CTGGAG	2 cut(s)	120, 363
HaeIII	GGCC	2 cut(s)	960, 1026
HapII	CCGG	7 cut(s)	97, 426, 657, 714, 858, 957, 1274
Hin1II	CATG	2 cut(s)	275, 401
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	4 cut(s)	93, 322, 618, 1161
HpaI	GTTAAC	1 cut(s)	246
HpaII	CCGG	7 cut(s)	97, 426, 657, 714, 858, 957, 1274
HphI	GGTGA	3 cut(s)	43, 127, 221
Hpy166II	GTNNAC	4 cut(s)	246, 1165, 1180, 1240
Hpy188I	TCNGA	5 cut(s)	472, 702, 939, 1017, 1117
Hpy188III	TCNNGA	6 cut(s)	137, 680, 714, 903, 1274, 1291
Hpy8I	GTNNAC	4 cut(s)	246, 1165, 1180, 1240
HpyAV	CCTTC	3 cut(s)	73, 80, 308
HpyCH4III	ACNGT	3 cut(s)	217, 706, 796
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	5 cut(s)	21, 401, 947, 1046, 1319
HpyF3I	CTNAG	4 cut(s)	201, 471, 588, 1216
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	2 cut(s)	275, 401
Kpn2I	TCCGGA	2 cut(s)	713, 1273
KpnI	GGTACC	1 cut(s)	523
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	261, 383, 437, 834
LmnI	GCTCC	2 cut(s)	583, 823
LweI	GCATC	1 cut(s)	1306
MaeI	CTAG	4 cut(s)	635, 645, 650, 962
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	5 cut(s)	209, 319, 591, 665, 782
MalI	GATC	4 cut(s)	263, 385, 439, 836
MboI	GATC	4 cut(s)	261, 383, 437, 834
MboII	GAAGA	6 cut(s)	343, 621, 681, 1004, 1190, 1344
MflI	RGATCY	1 cut(s)	834
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	7 cut(s)	276, 362, 411, 766, 774, 973, 1087
MlyI	GAGTC	2 cut(s)	316, 1170
MmeI	TCCRAC	3 cut(s)	917, 1031, 1040
MroI	TCCGGA	2 cut(s)	713, 1273
MseI	TTAA	6 cut(s)	147, 231, 245, 510, 603, 731
MslI	CAYNNNNRTG	1 cut(s)	270
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	7 cut(s)	97, 426, 657, 714, 858, 957, 1274
MspR9I	CCNGG	5 cut(s)	183, 342, 427, 658, 878
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	3 cut(s)	183, 342, 878
MvnI	CGCG	2 cut(s)	671, 1251
NciI	CCSGG	2 cut(s)	427, 658
NdeII	GATC	4 cut(s)	261, 383, 437, 834
NlaIII	CATG	2 cut(s)	275, 401
NlaIV	GGNNCC	6 cut(s)	178, 456, 521, 585, 825, 1027
NmuCI	GTSAC	4 cut(s)	209, 319, 591, 782
PcsI	WCGNNNNNNNCGW	1 cut(s)	1296
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	93, 618
PleI	GAGTC	2 cut(s)	316, 1169
PpsI	GAGTC	2 cut(s)	316, 1169
PshBI	ATTAAT	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	927
Psp6I	CCWGG	3 cut(s)	181, 340, 876
PspGI	CCWGG	3 cut(s)	181, 340, 876
PspN4I	GGNNCC	6 cut(s)	178, 456, 521, 585, 825, 1027
PspPI	GGNCC	3 cut(s)	185, 1025, 1173
PsuI	RGATCY	1 cut(s)	834
RsaI	GTAC	4 cut(s)	128, 521, 532, 1343
RsaNI	GTAC	4 cut(s)	127, 520, 531, 1342
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	6 cut(s)	147, 231, 245, 510, 603, 731
Sau3AI	GATC	4 cut(s)	261, 383, 437, 834
Sau96I	GGNCC	3 cut(s)	185, 1025, 1173
ScaI	AGTACT	1 cut(s)	532
SchI	GAGTC	2 cut(s)	316, 1170
ScrFI	CCNGG	5 cut(s)	183, 342, 427, 658, 878
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	1306
SinI	GGWCC	2 cut(s)	185, 1173
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	7 cut(s)	276, 362, 411, 766, 774, 973, 1087
SsiI	CCGC	2 cut(s)	1020, 1249
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	4 cut(s)	635, 645, 650, 962
StyD4I	CCNGG	5 cut(s)	181, 340, 425, 656, 876
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	3 cut(s)	217, 706, 796
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	7 cut(s)	77, 84, 91, 280, 440, 1257, 1290
TasI	AATT	7 cut(s)	276, 362, 411, 766, 774, 973, 1087
TatI	WGTACW	2 cut(s)	126, 530
TfiI	GAWTC	2 cut(s)	93, 618
Tru1I	TTAA	6 cut(s)	147, 231, 245, 510, 603, 731
Tru9I	TTAA	6 cut(s)	147, 231, 245, 510, 603, 731
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	4 cut(s)	209, 319, 591, 782
Tsp45I	GTSAC	4 cut(s)	209, 319, 591, 782
TspDTI	ATGAA	1 cut(s)	343
TspGWI	ACGGA	3 cut(s)	263, 477, 1165
TspRI	CASTG	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	185, 1173
VspI	ATTAAT	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	881
XapI	RAATTY	5 cut(s)	276, 362, 411, 766, 1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XspI	CTAG	4 cut(s)	635, 645, 650, 962
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.