Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002022

Physical Location & Seq

Genomic Coordinates Forward (+)

25521037 .. 25523155

Gene Structure 2119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008094

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGCAAAGAGAAGCTGGCTTATATGGATCAATTCGAGTAGCGCTTCCTGAAGGAGAATCTGAGCCCTTCCTCTATGATTATGATCGAAGCATCATACTCAATGATTGGTACCACAGAAGCACTTATGAACATGCAGTAGGACTATCTTCCAATCCTTTTGTCTGGGTTGGGGAACCTCAGTCACTTTTGATACAAGGCAAAGGAAGATTCAACTGCTCTAGCATCGCCACTCCAAGCTTAGAACCTGGTGTTTGTAACACAACTAGTCCTGACTGCTCTCCTTATGCAGTGACTGTAGTCCCTGGCAAAACTTATCGACTAAGGATTGCTAGTTTAACTGCTCTATCAGCCCTCAGTTTCCAAATAGAGGGTCATAATTTGACAGTGGTTGAAGCAGATGGGCATTATGTAGAGCCATTTGTTGTAAAGAACCTGTTCATATATTCCGGTGAGACATATTCGGTTCTAATAAAAGCAGACCAAGACCCTTCAAGAAACTATTGGATGACAACCAACATTGTTAGCCGAAATGCCACCGCCACCACCCCACCTGGTTTAGCCTTTCTGAATTACTATCCTAACCATCCTCGAAGATCTCCTCCAACAGTACCACCAGCAGGGCCGGTTTGGAATGATGTTCAGCCTCGACTAAATCAAAGTCTCGCCATTAAAGCACACCGAGATTTCATTCACACCCCTCCCCAAACCCCAGACAGAGTCATTGTTTTCCTCAATACCCAAAACCAGATAAATGGCAGTATGCGCTGGTCGGTGAATAATGTCTCATTCACTCTTCCTCACACACCTTACCTCATTGCACTTCAACAAAACCTCACTGATGCATTTGATCAAACACCTCCGCCGGAAGGGTATGACTTTGTGAACTATGACATCTACAAAGTGGCAAACAACAGCAATGCTACAACAAGTGATGGGATTTACAGGCTCCAGTTCAACTCAACAGTGGACATAATCCTGCAAAATGCAAACACCATGAATGCAAACAACAGCGAGACGCATCCGTGGCATTTGCATGGTCACGATTTTTGGGTACTCGGATATGGGGAAGGAAAGTTTGACATCAACAATGATTCAAAGAAGTACAATTTGGTGAATCCTATCATGAAGAACACTGTGCCTGTTCATCCATACGGTTGGACAGCTTTGAGGTTCAGGGCAGATAATCCAGGTGTATGGGCTTTCCATTGTCATATAGAGTCTCATTTCTATATGGGAATGGGTGTGGCGTTTGCAGAAGGAATAGACAGGTTGGGAAACTTGCCTTCTTCTATAATGGGGTGTGGTGAAACCAAAGGAGTAACGCACAGACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

445

Amino Acids

49.71

Weight (kDa)

6.17

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	30 - 193	1.5e-43	Multicopper oxidase
Cu-oxidase_2	PF07731	299 - 420	8.6e-39	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39830 AT4G39830 AT4G39830 AT4G39830
fragaria_vesca	FvH4_1g21540 FvH4_1g21540 FvH4_3g14660
malus_domestica	MD05G1228400.v1.1 MD05G1229100.v1.1 MD15G1328900.v1.1
prunus_persica	Prupe.4G131900_v2.0.a1 Prupe.6G179500_v2.0.a1
pyrus_communis	pycom05g21020 pycom15g29670
rosa_chinensis	RchiOBHm_Chr2g0115431 RchiOBHm_Chr4g0415131 RchiOBHm_Chr5g0024151
rosa_laevigata	RLG00000008094 RLG00000008611 RLG00000018185 RLG00000032773
rosa_multiflora	Rmu_sc0000635.1_g000010 Rmu_sc0003748.1_g000023 Rmu_sc0004033.1_g000014 Rmu_sc0008334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055090 Rroxscaffold_1G00055690 Rroxscaffold_2G00128340 Rroxscaffold_2G00129120 Rroxscaffold_5G00358940
rosa_rugosa	Rorug02G0196700.1 Rorug04G0132500 Rorug05G0082000
rosa_samantha	Rh2BG265100 Rh2CG259300 Rh4AG192300 Rh4BG190600 Rh4DG190300 Rh5AG172600 Rh5BG169200 Rh5CG184900 Rh5DG171400
rosa_wichuraiana	Rw2G019910 Rw4G016360 Rw5G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	108
AciI	CCGC	2 cut(s)	537, 860
AclWI	GGATC	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	4 cut(s)	110, 609, 1053, 1103
AfeI	AGCGCT	1 cut(s)	42
AfiI	CCNNNNNNNGG	3 cut(s)	367, 617, 866
AgsI	TTSAA	6 cut(s)	211, 392, 492, 824, 955, 1095
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	4 cut(s)	244, 301, 550, 1186
AjuI	GAANNNNNNNTTGG	2 cut(s)	1091, 1123
AluBI	AGCT	3 cut(s)	14, 237, 1163
AluI	AGCT	3 cut(s)	14, 237, 1163
Alw26I	GTCTC	5 cut(s)	446, 665, 787, 1007, 1224
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	293
Aor51HI	AGCGCT	1 cut(s)	42
AoxI	GGCC	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
Asp700I	GAANNNNTTC	1 cut(s)	434
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	2 cut(s)	43, 765
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	4 cut(s)	461, 784, 1123, 1316
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	66
BccI	CCATC	3 cut(s)	392, 591, 926
BciT130I	CCWGG	4 cut(s)	246, 303, 552, 1188
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	5 cut(s)	446, 665, 787, 1007, 1224
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	3 cut(s)	219, 264, 330
BfmI	CTRYAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	593
Bme1390I	CCNGG	4 cut(s)	246, 303, 552, 1188
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	3 cut(s)	110, 174, 947
BmrFI	CCNGG	4 cut(s)	246, 303, 552, 1188
BmsI	GCATC	4 cut(s)	99, 231, 829, 1027
BoxI	GACNNNNGTC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	301, 1022
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 617, 866
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	2 cut(s)	813, 922
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	4 cut(s)	246, 303, 552, 1188
BseDI	CCNNGG	2 cut(s)	301, 1022
BseGI	GGATG	4 cut(s)	510, 583, 1018, 1144
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	367, 617, 866
BseMI	GCAATG	2 cut(s)	813, 922
BseMII	CTCAG	3 cut(s)	51, 191, 367
BseNI	ACTGG	1 cut(s)	949
BseRI	GAGGAG	1 cut(s)	588
BshFI	GGCC	1 cut(s)	622
BshNI	GGYRCC	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	447, 623, 863
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	367, 617, 866
BsmAI	GTCTC	5 cut(s)	446, 665, 787, 1007, 1224
BsmBI	CGTCTC	1 cut(s)	1007
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	1003
BsnI	GGCC	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	4 cut(s)	26, 82, 593, 847
BspACI	CCGC	2 cut(s)	537, 860
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	3 cut(s)	52, 190, 366
BspHI	TCATGA	1 cut(s)	1122
BspLI	GGNNCC	3 cut(s)	110, 174, 947
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	108
BsrDI	GCAATG	2 cut(s)	813, 922
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	949
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	301, 1022
BssMI	GATC	4 cut(s)	26, 82, 593, 847
Bst2UI	CCWGG	4 cut(s)	246, 303, 552, 1188
Bst4CI	ACNGT	6 cut(s)	295, 385, 607, 964, 1135, 1154
Bst6I	CTCTTC	1 cut(s)	798
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	6 cut(s)	60, 177, 238, 320, 353, 1332
BstDSI	CCRYGG	1 cut(s)	1022
BstF5I	GGATG	4 cut(s)	510, 583, 1018, 1144
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 765
BstKTI	GATC	4 cut(s)	29, 85, 596, 850
BstMAI	GTCTC	5 cut(s)	446, 665, 787, 1007, 1224
BstMBI	GATC	4 cut(s)	26, 82, 593, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 671, 762, 1024
BstNI	CCWGG	4 cut(s)	246, 303, 552, 1188
BstNSI	RCATGY	1 cut(s)	134
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSCI	CCNGG	4 cut(s)	244, 301, 550, 1186
BstSFI	CTRYAG	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	593
BstXI	CCANNNNNNTGG	3 cut(s)	752, 1155, 1194
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	1 cut(s)	622
BtgI	CCRYGG	1 cut(s)	1022
BtgZI	GCGATG	1 cut(s)	208
BtsCI	GGATG	4 cut(s)	510, 583, 1018, 1144
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	5 cut(s)	294, 390, 834, 969, 1131
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	1122
CfoI	GCGC	2 cut(s)	43, 765
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	620
CseI	GACGC	1 cut(s)	1024
CsiI	ACCWGGT	2 cut(s)	244, 550
Csp6I	GTAC	4 cut(s)	109, 608, 1052, 1102
CviAII	CATG	4 cut(s)	131, 994, 1034, 1123
CviQI	GTAC	4 cut(s)	109, 608, 1052, 1102
DdeI	CTNAG	6 cut(s)	60, 177, 238, 320, 353, 1332
DpnI	GATC	4 cut(s)	28, 84, 595, 849
DpnII	GATC	4 cut(s)	26, 82, 593, 847
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
EciI	GGCGGA	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	69
EcoRII	CCWGG	4 cut(s)	244, 301, 550, 1186
EcoT22I	ATGCAT	1 cut(s)	844
EcoT38I	GRGCYC	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	1007
FaeI	CATG	4 cut(s)	134, 997, 1037, 1126
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	4 cut(s)	130, 993, 1033, 1122
FbaI	TGATCA	1 cut(s)	847
FokI	GGATG	4 cut(s)	517, 570, 1005, 1131
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	3 cut(s)	219, 264, 330
GlaI	GCGC	2 cut(s)	42, 764
GsuI	CTGGAG	1 cut(s)	932
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	3 cut(s)	447, 623, 863
HgaI	GACGC	1 cut(s)	1024
HhaI	GCGC	2 cut(s)	43, 765
Hin1II	CATG	4 cut(s)	134, 997, 1037, 1126
Hin6I	GCGC	2 cut(s)	41, 763
HinP1I	GCGC	2 cut(s)	41, 763
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	6 cut(s)	56, 207, 717, 1091, 1114, 1217
HpaII	CCGG	3 cut(s)	447, 623, 863
HphI	GGTGA	4 cut(s)	461, 784, 1123, 1316
Hpy166II	GTNNAC	2 cut(s)	883, 967
Hpy188I	TCNGA	3 cut(s)	61, 567, 1058
Hpy188III	TCNNGA	5 cut(s)	47, 269, 492, 1040, 1123
Hpy8I	GTNNAC	2 cut(s)	883, 967
HpyAV	CCTTC	7 cut(s)	44, 76, 498, 860, 1061, 1250, 1293
HpyCH4III	ACNGT	6 cut(s)	295, 385, 607, 964, 1135, 1154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 671, 762, 1024
HpyF3I	CTNAG	6 cut(s)	60, 177, 238, 320, 353, 1332
Hsp92II	CATG	4 cut(s)	134, 997, 1037, 1126
HspAI	GCGC	2 cut(s)	41, 763
KpnI	GGTACC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	26, 82, 593, 847
LmnI	GCTCC	1 cut(s)	951
LweI	GCATC	4 cut(s)	99, 231, 829, 1027
MabI	ACCWGGT	2 cut(s)	244, 550
MaeI	CTAG	3 cut(s)	219, 264, 330
MaeIII	GTNAC	5 cut(s)	180, 254, 289, 1037, 1318
MalI	GATC	4 cut(s)	28, 84, 595, 849
MboI	GATC	4 cut(s)	26, 82, 593, 847
MboII	GAAGA	6 cut(s)	138, 216, 603, 785, 1138, 1278
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	30, 376, 568, 1105
MlyI	GAGTC	2 cut(s)	726, 1226
MmeI	TCCRAC	2 cut(s)	626, 1136
Mph1103I	ATGCAT	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	2 cut(s)	335, 669
MslI	CAYNNNNRTG	1 cut(s)	1032
MspI	CCGG	3 cut(s)	447, 623, 863
MspR9I	CCNGG	4 cut(s)	246, 303, 552, 1188
Mva1269I	GAATGC	1 cut(s)	1003
MvaI	CCWGG	4 cut(s)	246, 303, 552, 1188
MwoI	GCNNNNNNNGC	4 cut(s)	347, 671, 762, 1024
NdeII	GATC	4 cut(s)	26, 82, 593, 847
NlaIII	CATG	4 cut(s)	134, 997, 1037, 1126
NlaIV	GGNNCC	3 cut(s)	110, 174, 947
NmuCI	GTSAC	3 cut(s)	180, 289, 1037
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	1122
PctI	GAATGC	1 cut(s)	1003
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	4 cut(s)	56, 207, 1091, 1114
PflFI	GACNNNGTC	1 cut(s)	716
PleI	GAGTC	2 cut(s)	725, 1225
PpsI	GAGTC	2 cut(s)	725, 1225
PshAI	GACNNNNGTC	1 cut(s)	296
Psp6I	CCWGG	4 cut(s)	244, 301, 550, 1186
PspGI	CCWGG	4 cut(s)	244, 301, 550, 1186
PspN4I	GGNNCC	3 cut(s)	110, 174, 947
PspPI	GGNCC	1 cut(s)	620
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	593
PsyI	GACNNNGTC	1 cut(s)	716
RsaI	GTAC	4 cut(s)	110, 609, 1053, 1103
RsaNI	GTAC	4 cut(s)	109, 608, 1052, 1102
RseI	CAYNNNNRTG	1 cut(s)	1032
SaqAI	TTAA	2 cut(s)	335, 669
Sau3AI	GATC	4 cut(s)	26, 82, 593, 847
Sau96I	GGNCC	1 cut(s)	620
SchI	GAGTC	2 cut(s)	726, 1226
ScrFI	CCNGG	4 cut(s)	246, 303, 552, 1188
SduI	GDGCHC	1 cut(s)	66
SexAI	ACCWGGT	2 cut(s)	244, 550
SfaNI	GCATC	4 cut(s)	99, 231, 829, 1027
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	4 cut(s)	30, 376, 568, 1105
SsiI	CCGC	2 cut(s)	537, 860
SspMI	CTAG	3 cut(s)	219, 264, 330
StyD4I	CCNGG	4 cut(s)	244, 301, 550, 1186
TaaI	ACNGT	6 cut(s)	295, 385, 607, 964, 1135, 1154
TaqI	TCGA	5 cut(s)	34, 85, 316, 589, 646
TasI	AATT	4 cut(s)	30, 376, 568, 1105
TatI	WGTACW	1 cut(s)	1101
TfiI	GAWTC	4 cut(s)	56, 207, 1091, 1114
Tru1I	TTAA	2 cut(s)	335, 669
Tru9I	TTAA	2 cut(s)	335, 669
TscAI	CASTG	5 cut(s)	294, 390, 841, 969, 1138
TseFI	GTSAC	3 cut(s)	180, 289, 1037
Tsp45I	GTSAC	3 cut(s)	180, 289, 1037
TspDTI	ATGAA	6 cut(s)	141, 427, 676, 1010, 1133, 1139
TspGWI	ACGGA	1 cut(s)	1011
TspRI	CASTG	5 cut(s)	294, 390, 841, 969, 1138
Tth111I	GACNNNGTC	1 cut(s)	716
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	3 cut(s)	219, 264, 330
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.