Rh4AG192300

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002022
Physical Location & Seq
Reverse (-)
47362111 .. 47365165
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG192300.1

Sequence Viewer

Length: 1356 bp
ATGCAAAGAGAAGCTGGCTTATATGGATCAATTCGAGTAGCGCTTCCTGAAGGAGAATCCGAGCCCTTCCTCTACGATTATGATCGAAGCATCATACTCAATGATTGGTACCACAGAAGCACTTATGAACATGCAGTAGGACTATCTTCCAATCCTTTTGTCTGGGTTGGGGAACCTCAGTCACTTTTGATACAAGGCAAAGGAAGATTCAACTGTTCTACCATCGCCACTTCAAGCTTGGAACCTGGTGTTTGTAACACAACTAGTCCTGACTGCTCTCCCTATGCAGTGACTGTAGTCCCTGGCAAAACTTATCGACTAAGGATTGCTAGTTTGACTGCTCTATCAGCCCTCAGTTTCCAAATAGAGGGTCATAATTTGACAGTGGTTGAAGCAGATGGGCATTATGTAGAGCCATTTGTTGTAAAGAACCTGTTCATATATTCCGGTGAGACATATTCGGTTCTAATAAAAGCAGACCAAGACCCTTCAAGAAACTATTGGATGACAACCAACATTGTTAGCCGAAATCCCACCACCACCACCCAAAATGTCACCACCACCACCTCACCTGGTTTAGCCTTTCTGAATTACTATCCTAACCATCCTCGAAGATCTCCTCCAACAGTACCACCAGCAGGGCCGGCTTGGAATGATGTTCAGCCTCGACTAAATCAAAGTCTCGCCATTAAGGCACACCGAGATTTCATTCACACCCCTCCCCAAACCCCAGACAGAGTCATTGTTTTCCTCAATACCCAAAACCAGATAAATGGCTATAGGCGCTGGTCAGTGAATAATGTCTCATTCACTCTTCCTCACACACCTTACCTCATTGCACTTCAACAAAACCTCACTGATACATTTGATCAAACACCTCCGCCGGAAGGGTATGACTTTGTAAACTATGACATCTACAAAGTGGCAAACAACAGCAATGCTACAACAAGTGATGGGATTTACCGGCTCCAGTTCAACACAACAGTGGACATAATCCTGCAAAATGCAAACACCATGAATGCAAACAACAGCGAGACGCATCCGTGGCATTTGCATGGTCACGATTTTTGGGTACTCGGATATGGGGAAGGAAAGTTTGACATCAACAATGATCCAAAGAAGTACAATTTGGTGAATCCTATCATGAAGAACACTGTGCCTGTTCATCCATACGGTTGGACAGCTTTGAGGTTCAGGGCAGATAATCCAGGTGTATGGGCTTTCCATTGTCATATAGAGTCTCATTTCTATATGGGAATGGGTGTGGTGTTTGCAGAAGGAATAGACAGGTTGGGAAACTTGCCTTCTTCTATAATGGGGTGTGGTGAAACCAAAGGAGTAACGCACAGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

451

Amino Acids

50.66

Weight (kDa)

6.27

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 30 - 198 2.3e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 305 - 427 3.1e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 1 cut(s) 881
AclWI GGATC 2 cut(s) 34, 1106
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 4 cut(s) 110, 630, 1074, 1124
AfeI AGCGCT 1 cut(s) 42
AfiI CCNNNNNNNGG 3 cut(s) 367, 638, 887
AgsI TTSAA 6 cut(s) 211, 234, 392, 492, 845, 976
AhlI ACTAGT 1 cut(s) 263
AjnI CCWGG 4 cut(s) 244, 301, 571, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 1112, 1144
AleI CACNNNNGTG 1 cut(s) 983
AluBI AGCT 3 cut(s) 14, 237, 1184
AluI AGCT 3 cut(s) 14, 237, 1184
Alw26I GTCTC 5 cut(s) 446, 686, 808, 1028, 1245
AlwI GGATC 2 cut(s) 34, 1106
AlwNI CAGNNNCTG 1 cut(s) 293
Aor51HI AGCGCT 1 cut(s) 42
AoxI GGCC 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
Asp700I GAANNNNTTC 1 cut(s) 434
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 43, 786
AspS9I GGNCC 1 cut(s) 641
AsuHPI GGTGA 5 cut(s) 461, 547, 561, 1144, 1337
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 66
BccI CCATC 4 cut(s) 230, 392, 612, 947
BciT130I CCWGG 4 cut(s) 246, 303, 573, 1209
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 5 cut(s) 446, 686, 808, 1028, 1245
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 2 cut(s) 264, 330
BfmI CTRYAG 2 cut(s) 294, 778
BfoI RGCGCY 2 cut(s) 44, 787
BglI GCCNNNNNGGC 1 cut(s) 692
BglII AGATCT 1 cut(s) 614
Bme1390I CCNGG 4 cut(s) 246, 303, 573, 1209
BmgT120I GGNCC 1 cut(s) 641
BmiI GGNNCC 4 cut(s) 110, 174, 243, 968
BmrFI CCNGG 4 cut(s) 246, 303, 573, 1209
BmsI GCATC 2 cut(s) 99, 1048
BoxI GACNNNNGTC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 953
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 301, 1043
BsaWI WCCGGW 1 cut(s) 446
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 638, 887
Bse118I RCCGGY 2 cut(s) 643, 963
Bse1I ACTGG 1 cut(s) 970
Bse3DI GCAATG 2 cut(s) 834, 943
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 4 cut(s) 246, 303, 573, 1209
BseDI CCNNGG 2 cut(s) 301, 1043
BseGI GGATG 4 cut(s) 510, 604, 1039, 1165
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 367, 638, 887
BseMI GCAATG 2 cut(s) 834, 943
BseMII CTCAG 2 cut(s) 191, 367
BseNI ACTGG 1 cut(s) 970
BseRI GAGGAG 1 cut(s) 609
BshFI GGCC 1 cut(s) 643
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 4 cut(s) 447, 644, 884, 964
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 367, 638, 887
BsmAI GTCTC 5 cut(s) 446, 686, 808, 1028, 1245
BsmBI CGTCTC 1 cut(s) 1028
BsmFI GGGAC 1 cut(s) 284
BsmI GAATGC 1 cut(s) 1024
BsnI GGCC 1 cut(s) 643
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 5 cut(s) 26, 82, 614, 868, 1111
BspACI CCGC 1 cut(s) 881
BspANI GGCC 1 cut(s) 643
BspCNI CTCAG 2 cut(s) 190, 366
BspHI TCATGA 1 cut(s) 1143
BspLI GGNNCC 4 cut(s) 110, 174, 243, 968
BspPI GGATC 2 cut(s) 34, 1106
BspT107I GGYRCC 1 cut(s) 108
BsrDI GCAATG 2 cut(s) 834, 943
BsrFI RCCGGY 2 cut(s) 643, 963
BsrI ACTGG 1 cut(s) 970
BssAI RCCGGY 2 cut(s) 643, 963
BssECI CCNNGG 2 cut(s) 301, 1043
BssMI GATC 5 cut(s) 26, 82, 614, 868, 1111
Bst2UI CCWGG 4 cut(s) 246, 303, 573, 1209
Bst4CI ACNGT 7 cut(s) 215, 295, 385, 628, 985, 1156, 1175
Bst6I CTCTTC 1 cut(s) 819
BstC8I GCNNGC 2 cut(s) 16, 645
BstDEI CTNAG 4 cut(s) 177, 320, 353, 1353
BstDSI CCRYGG 1 cut(s) 1043
BstF5I GGATG 4 cut(s) 510, 604, 1039, 1165
BstH2I RGCGCY 2 cut(s) 44, 787
BstHHI GCGC 2 cut(s) 43, 786
BstKTI GATC 5 cut(s) 29, 85, 617, 871, 1114
BstMAI GTCTC 5 cut(s) 446, 686, 808, 1028, 1245
BstMBI GATC 5 cut(s) 26, 82, 614, 868, 1111
BstMWI GCNNNNNNNGC 5 cut(s) 347, 644, 692, 783, 1045
BstNI CCWGG 4 cut(s) 246, 303, 573, 1209
BstNSI RCATGY 1 cut(s) 134
BstPAI GACNNNNGTC 1 cut(s) 296
BstSCI CCNGG 4 cut(s) 244, 301, 571, 1207
BstSFI CTRYAG 2 cut(s) 294, 778
BstX2I RGATCY 1 cut(s) 614
BstXI CCANNNNNNTGG 3 cut(s) 773, 1176, 1215
BstYI RGATCY 1 cut(s) 614
BsuRI GGCC 1 cut(s) 643
BtgI CCRYGG 1 cut(s) 1043
BtgZI GCGATG 1 cut(s) 208
BtsCI GGATG 4 cut(s) 510, 604, 1039, 1165
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 6 cut(s) 294, 390, 798, 855, 990, 1152
Cac8I GCNNGC 2 cut(s) 16, 645
CaiI CAGNNNCTG 1 cut(s) 293
CciI TCATGA 1 cut(s) 1143
CfoI GCGC 2 cut(s) 43, 786
Cfr10I RCCGGY 2 cut(s) 643, 963
Cfr13I GGNCC 1 cut(s) 641
CseI GACGC 1 cut(s) 1045
CsiI ACCWGGT 2 cut(s) 244, 571
Csp6I GTAC 4 cut(s) 109, 629, 1073, 1123
CviAII CATG 4 cut(s) 131, 1015, 1055, 1144
CviQI GTAC 4 cut(s) 109, 629, 1073, 1123
DdeI CTNAG 4 cut(s) 177, 320, 353, 1353
DpnI GATC 5 cut(s) 28, 84, 616, 870, 1113
DpnII GATC 5 cut(s) 26, 82, 614, 868, 1111
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
EciI GGCGGA 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 66
Eco47III AGCGCT 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 69
EcoRII CCWGG 4 cut(s) 244, 301, 571, 1207
EcoT38I GRGCYC 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 1028
FaeI CATG 4 cut(s) 134, 1018, 1058, 1147
FaqI GGGAC 1 cut(s) 284
FatI CATG 4 cut(s) 130, 1014, 1054, 1143
FbaI TGATCA 1 cut(s) 868
FokI GGATG 4 cut(s) 517, 591, 1026, 1152
FriOI GRGCYC 1 cut(s) 66
FspBI CTAG 2 cut(s) 264, 330
GlaI GCGC 2 cut(s) 42, 785
GsuI CTGGAG 1 cut(s) 953
HaeII RGCGCY 2 cut(s) 44, 787
HaeIII GGCC 1 cut(s) 643
HapII CCGG 4 cut(s) 447, 644, 884, 964
HgaI GACGC 1 cut(s) 1045
HhaI GCGC 2 cut(s) 43, 786
Hin1II CATG 4 cut(s) 134, 1018, 1058, 1147
Hin6I GCGC 2 cut(s) 41, 784
HinP1I GCGC 2 cut(s) 41, 784
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 5 cut(s) 56, 207, 738, 1135, 1238
HpaII CCGG 4 cut(s) 447, 644, 884, 964
HphI GGTGA 5 cut(s) 461, 547, 561, 1144, 1337
Hpy166II GTNNAC 2 cut(s) 904, 988
Hpy188I TCNGA 3 cut(s) 61, 588, 1079
Hpy188III TCNNGA 5 cut(s) 47, 269, 492, 1061, 1144
Hpy8I GTNNAC 2 cut(s) 904, 988
HpyAV CCTTC 7 cut(s) 44, 76, 498, 881, 1082, 1271, 1314
HpyCH4III ACNGT 7 cut(s) 215, 295, 385, 628, 985, 1156, 1175
HpyCH4V TGCA 9 cut(s) 4, 134, 287, 839, 1000, 1007, 1022, 1054, 1274
HpyF10VI GCNNNNNNNGC 5 cut(s) 347, 644, 692, 783, 1045
HpyF3I CTNAG 4 cut(s) 177, 320, 353, 1353
Hsp92II CATG 4 cut(s) 134, 1018, 1058, 1147
HspAI GCGC 2 cut(s) 41, 784
KpnI GGTACC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 643
KroNI GCCGGC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 5 cut(s) 26, 82, 614, 868, 1111
LmnI GCTCC 1 cut(s) 972
LweI GCATC 2 cut(s) 99, 1048
MabI ACCWGGT 2 cut(s) 244, 571
MaeI CTAG 2 cut(s) 264, 330
MaeIII GTNAC 6 cut(s) 180, 254, 289, 553, 1058, 1339
MalI GATC 5 cut(s) 28, 84, 616, 870, 1113
MboI GATC 5 cut(s) 26, 82, 614, 868, 1111
MboII GAAGA 6 cut(s) 138, 216, 624, 806, 1159, 1299
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 4 cut(s) 30, 376, 589, 1126
MlyI GAGTC 2 cut(s) 747, 1247
MmeI TCCRAC 2 cut(s) 647, 1157
MroNI GCCGGC 1 cut(s) 643
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 1 cut(s) 690
MslI CAYNNNNRTG 2 cut(s) 983, 1053
MspI CCGG 4 cut(s) 447, 644, 884, 964
MspR9I CCNGG 4 cut(s) 246, 303, 573, 1209
Mva1269I GAATGC 1 cut(s) 1024
MvaI CCWGG 4 cut(s) 246, 303, 573, 1209
MwoI GCNNNNNNNGC 5 cut(s) 347, 644, 692, 783, 1045
NaeI GCCGGC 1 cut(s) 645
NdeII GATC 5 cut(s) 26, 82, 614, 868, 1111
NgoMIV GCCGGC 1 cut(s) 643
NlaIII CATG 4 cut(s) 134, 1018, 1058, 1147
NlaIV GGNNCC 4 cut(s) 110, 174, 243, 968
NmuCI GTSAC 4 cut(s) 180, 289, 553, 1058
NspI RCATGY 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 983
PagI TCATGA 1 cut(s) 1143
PctI GAATGC 1 cut(s) 1024
PdiI GCCGGC 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 3 cut(s) 56, 207, 1135
PflFI GACNNNGTC 1 cut(s) 737
PleI GAGTC 2 cut(s) 746, 1246
PpsI GAGTC 2 cut(s) 746, 1246
PshAI GACNNNNGTC 1 cut(s) 296
Psp6I CCWGG 4 cut(s) 244, 301, 571, 1207
PspGI CCWGG 4 cut(s) 244, 301, 571, 1207
PspN4I GGNNCC 4 cut(s) 110, 174, 243, 968
PspPI GGNCC 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 1 cut(s) 614
PsyI GACNNNGTC 1 cut(s) 737
RsaI GTAC 4 cut(s) 110, 630, 1074, 1124
RsaNI GTAC 4 cut(s) 109, 629, 1073, 1123
RseI CAYNNNNRTG 2 cut(s) 983, 1053
SaqAI TTAA 1 cut(s) 690
Sau3AI GATC 5 cut(s) 26, 82, 614, 868, 1111
Sau96I GGNCC 1 cut(s) 641
SchI GAGTC 2 cut(s) 747, 1247
ScrFI CCNGG 4 cut(s) 246, 303, 573, 1209
SduI GDGCHC 1 cut(s) 66
SexAI ACCWGGT 2 cut(s) 244, 571
SfaNI GCATC 2 cut(s) 99, 1048
SfcI CTRYAG 2 cut(s) 294, 778
SmiMI CAYNNNNRTG 2 cut(s) 983, 1053
SpeI ACTAGT 1 cut(s) 263
Sse9I AATT 4 cut(s) 30, 376, 589, 1126
SsiI CCGC 1 cut(s) 881
SspMI CTAG 2 cut(s) 264, 330
StyD4I CCNGG 4 cut(s) 244, 301, 571, 1207
TaaI ACNGT 7 cut(s) 215, 295, 385, 628, 985, 1156, 1175
TaqI TCGA 5 cut(s) 34, 85, 316, 610, 667
TasI AATT 4 cut(s) 30, 376, 589, 1126
TatI WGTACW 1 cut(s) 1122
TfiI GAWTC 3 cut(s) 56, 207, 1135
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 6 cut(s) 294, 390, 798, 862, 990, 1159
TseFI GTSAC 4 cut(s) 180, 289, 553, 1058
Tsp45I GTSAC 4 cut(s) 180, 289, 553, 1058
TspDTI ATGAA 6 cut(s) 141, 427, 697, 1031, 1154, 1160
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 6 cut(s) 294, 390, 798, 862, 990, 1159
Tth111I GACNNNGTC 1 cut(s) 737
XceI RCATGY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 2 cut(s) 264, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.