Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002022

Physical Location & Seq

Genomic Coordinates Reverse (-)

7300876 .. 7303554

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G131900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGTTGTTTGTACAAGCTTCTTCAAGCTTTCTGAGTTTGAAAGCCTCAAACATGGTTGAGATTTTAGCACACAGAAGTTTGGTGAAGCTGTTGGCTTTATGTCATTTTATTTCTTTGGTAGCTGTCGTGACAGTTGAAGCTAGAATTCGGCATTACAGATGGGAGGTGAAGTATGAGTACAAATCTCCAGATTGCTTTAAGAAGCTGGCCATAACCATTAATGGAGGAACCCCAGGACCAAAAATCTTGGCACAGCAGGGTGACACAATTGTAGTTGAGCTTAAGAATAGCTTGTTAACCGAGAATGTAGCAATCCACTGGCATGGAATTCGACAGATTGGAACACCTTGGAGTGATGGAACAGAAGGTGTGACTCAATGTCCTATTTTTCCAGGAGATACCTTCATATACAAGTTTGTTGTGGATAGGGCAGGGTCATATCTATACCATGCACATTATGGAATTCAAAGGGAAGCTGGGTTATACGGATCCATTACTGTCTCTGTTCCTAATGGAGAATCTGAGCCCTTTGCCTATGATTATGACAGAAGCATTATCCTTAATGACTGGTTCCACAAAAGCACTTATGAGCAAGCTGTTGGCTTGTCTTCCATACCTTTTGTTTGGGTTGGGGAGCCTCAGTCACTTCTGATTAATGGAAGAGGGAGGTTCAACTGCTCTCTACTAGCAACTCCTAGCCTAGAAGTCGGAGTCTGTAACACAACAAACCCAGAATGTTCTCCCTATATATTGACAATCATCCCTGACAAAACATATCGGTTAAGGATTGGTAGCTTGACCTCTCTATCAGCTCTCAACTTCCAAATTGAGGGTCACAATATGACTGTTGTTGAAGCTGATGGGCATTATGTGGAGCCATTTCAGACTAAAAACCTATATATTTACTCTGGTGAGACATATTCTGTCCTAGTAACAGCAAACCAAGACCCATCAAGAAACTACTGGGTGACTACAAATGTAGTTAGCAGAAAACCTGCAACCCCAACTGGCTTAGCAATCCTCAATTATTATCCAAAATACTTCAAGAAATCCCCTCCAACTCTGCCAACCACAGGCCCTCTATGGAATGACAGTGTACCAAGATTGGCACAGAGCCTTAGTATCAAAGCCCACAAAAGTTTCATTCACTCCCCCGCTCTCACTTCAGACAAAGTCATTGTGCTTCTCAACACACAAAATAAGATAGATGGGTACTATAGATGGTCCTTAAACAATGTATCTTTCTATCTCCCCCACACACCTTATTTGATAGCTCTAAAGGAAAACTTAAACTTAAACCATGTGTTTGATCAAACCCCACCTCCAGAAAACTATGACTTCAAGAATTATGATATATACGCCGTTGCCGAGAATGTAAATGCCACTTCCAGCAATGGCATATACAGGTTGAAGTTCAATACCACAGTGGATATTATACTGCAGAATGCAAACACTATGACTGTGAACAATAGTGAGACACATCCATGGCATCTCCATGGGCATGATTTTTGGGTGCTGGGCTATGGAACAGGCAAGTTTGACATGATGAAGGATGTGGGAAAATACAATCTTGTAAATCCAATCATGAAGAACACTGTGCCAGTACATCCTTATGGCTGGACTGCTTTGAGATTTAGAGCTGATAATCCAGGTGTTTGGGCTTTTCATTGCCATTTAGAATCCCATTTCTATATGGGAATGGGAGTGGTTTTTGAAGCAGGGGTGGAGAAAGTGGGAAAGCTGCCTTCTTCTGTTATGGGTTGTGGAGAAACCAAAGGTTTCCATAGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

598

Amino Acids

67.08

Weight (kDa)

7.99

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39830 AT4G39830 AT4G39830 AT4G39830
fragaria_vesca	FvH4_1g21540 FvH4_1g21540 FvH4_3g14660
malus_domestica	MD05G1228400.v1.1 MD05G1229100.v1.1 MD15G1328900.v1.1
prunus_persica	Prupe.4G131900_v2.0.a1 Prupe.6G179500_v2.0.a1
pyrus_communis	pycom05g21020 pycom15g29670
rosa_chinensis	RchiOBHm_Chr2g0115431 RchiOBHm_Chr4g0415131 RchiOBHm_Chr5g0024151
rosa_laevigata	RLG00000008094 RLG00000008611 RLG00000018185 RLG00000032773
rosa_multiflora	Rmu_sc0000635.1_g000010 Rmu_sc0003748.1_g000023 Rmu_sc0004033.1_g000014 Rmu_sc0008334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055090 Rroxscaffold_1G00055690 Rroxscaffold_2G00128340 Rroxscaffold_2G00129120 Rroxscaffold_5G00358940
rosa_rugosa	Rorug02G0196700.1 Rorug04G0132500 Rorug05G0082000
rosa_samantha	Rh2BG265100 Rh2CG259300 Rh4AG192300 Rh4BG190600 Rh4DG190300 Rh5AG172600 Rh5BG169200 Rh5CG184900 Rh5DG171400
rosa_wichuraiana	Rw2G019910 Rw4G016360 Rw5G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1003
AccBSI	CCGCTC	1 cut(s)	1157
AciI	CCGC	1 cut(s)	1155
AclWI	GGATC	2 cut(s)	483, 496
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	3 cut(s)	144, 327, 462
AcuI	CTGAAG	1 cut(s)	1149
AfaI	GTAC	5 cut(s)	12, 179, 1098, 1214, 1605
AfiI	CCNNNNNNNGG	2 cut(s)	829, 1073
AflII	CTTAAG	1 cut(s)	281
AhdI	GACNNNNNGTC	1 cut(s)	378
AjnI	CCWGG	3 cut(s)	232, 391, 1648
Alw26I	GTCTC	3 cut(s)	505, 908, 1469
AlwI	GGATC	2 cut(s)	483, 496
AoxI	GGCC	3 cut(s)	207, 1075, 1787
ApeKI	GCWGC	1 cut(s)	1741
ApoI	RAATTY	3 cut(s)	144, 327, 462
ArsI	GACNNNNNNTTYG	2 cut(s)	817, 849
AseI	ATTAAT	2 cut(s)	219, 654
AspS9I	GGNCC	3 cut(s)	236, 1076, 1224
AsuHPI	GGTGA	5 cut(s)	94, 178, 272, 923, 979
AvaII	GGWCC	2 cut(s)	236, 1224
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
BbsI	GAAGAC	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	1728
BccI	CCATC	6 cut(s)	153, 350, 854, 958, 1202, 1215
BceAI	ACGGC	1 cut(s)	1346
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	3 cut(s)	234, 393, 1650
BclI	TGATCA	1 cut(s)	1309
BcoDI	GTCTC	3 cut(s)	505, 908, 1469
BfaI	CTAG	5 cut(s)	141, 686, 696, 701, 929
BfmI	CTRYAG	2 cut(s)	1216, 1439
BfrI	CTTAAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	1003
BisI	GCNGC	1 cut(s)	1742
BlpI	GCTNAGC	1 cut(s)	1012
BlsI	GCNGC	1 cut(s)	1743
Bme1390I	CCNGG	3 cut(s)	234, 393, 1650
Bme18I	GGWCC	2 cut(s)	236, 1224
BmeRI	GACNNNNNGTC	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	236, 1076, 1224
BmiI	GGNNCC	5 cut(s)	229, 490, 572, 636, 876
BmrFI	CCNGG	3 cut(s)	234, 393, 1650
BmrI	ACTGGG	1 cut(s)	973
BmsI	GCATC	1 cut(s)	1498
BmuI	ACTGGG	1 cut(s)	973
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	2 cut(s)	171, 1308
Bpu1102I	GCTNAGC	1 cut(s)	1012
BsaJI	CCNNGG	4 cut(s)	232, 347, 1484, 1495
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 626, 656, 1306, 1336
Bsc4I	CCNNNNNNNGG	2 cut(s)	829, 1073
Bse1I	ACTGG	5 cut(s)	323, 572, 968, 1012, 1601
Bse3DI	GCAATG	2 cut(s)	1399, 1666
BseBI	CCWGG	3 cut(s)	234, 393, 1650
BseDI	CCNNGG	4 cut(s)	232, 347, 1484, 1495
BseGI	GGATG	4 cut(s)	759, 1480, 1558, 1606
BseLI	CCNNNNNNNGG	2 cut(s)	829, 1073
BseMI	GCAATG	2 cut(s)	1399, 1666
BseMII	CTCAG	3 cut(s)	23, 513, 653
BseNI	ACTGG	5 cut(s)	323, 572, 968, 1012, 1601
BseXI	GCAGC	1 cut(s)	1728
BseYI	CCCAGC	2 cut(s)	476, 1516
BshFI	GGCC	3 cut(s)	209, 1077, 1789
BslI	CCNNNNNNNGG	2 cut(s)	829, 1073
BsmAI	GTCTC	3 cut(s)	505, 908, 1469
BsmI	GAATGC	1 cut(s)	1450
BsnI	GGCC	3 cut(s)	209, 1077, 1789
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	488, 1309
Bsp1720I	GCTNAGC	1 cut(s)	1012
Bsp19I	CCATGG	2 cut(s)	1484, 1495
BspACI	CCGC	1 cut(s)	1155
BspANI	GGCC	3 cut(s)	209, 1077, 1789
BspCNI	CTCAG	3 cut(s)	24, 514, 652
BspHI	TCATGA	1 cut(s)	1584
BspLI	GGNNCC	5 cut(s)	229, 490, 572, 636, 876
BspMAI	CTGCAG	1 cut(s)	1443
BspMI	ACCTGC	1 cut(s)	1003
BspPI	GGATC	2 cut(s)	483, 496
BspTI	CTTAAG	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	1157
BsrDI	GCAATG	2 cut(s)	1399, 1666
BsrGI	TGTACA	1 cut(s)	10
BsrI	ACTGG	5 cut(s)	323, 572, 968, 1012, 1601
BssECI	CCNNGG	4 cut(s)	232, 347, 1484, 1495
BssMI	GATC	2 cut(s)	488, 1309
BssT1I	CCWWGG	3 cut(s)	347, 1484, 1495
Bst2UI	CCWGG	3 cut(s)	234, 393, 1650
Bst4CI	ACNGT	7 cut(s)	133, 499, 847, 1094, 1426, 1462, 1597
Bst6I	CTCTTC	1 cut(s)	655
BstAFI	CTTAAG	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	207, 594
BstDEI	CTNAG	5 cut(s)	32, 522, 639, 1012, 1118
BstDSI	CCRYGG	2 cut(s)	1484, 1495
BstF5I	GGATG	4 cut(s)	759, 1480, 1558, 1606
BstKTI	GATC	2 cut(s)	491, 1312
BstMAI	GTCTC	3 cut(s)	505, 908, 1469
BstMBI	GATC	2 cut(s)	488, 1309
BstNI	CCWGG	3 cut(s)	234, 393, 1650
BstSCI	CCNGG	3 cut(s)	232, 391, 1648
BstSFI	CTRYAG	2 cut(s)	1216, 1439
BstV1I	GCAGC	1 cut(s)	1728
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	1 cut(s)	488
BstXI	CCANNNNNNTGG	2 cut(s)	323, 1656
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	209, 1077, 1789
BtgI	CCRYGG	2 cut(s)	1484, 1495
BtsCI	GGATG	4 cut(s)	759, 1480, 1558, 1606
BtsIMutI	CAGTG	4 cut(s)	316, 1099, 1431, 1593
BveI	ACCTGC	1 cut(s)	1003
Cac8I	GCNNGC	2 cut(s)	207, 594
CciI	TCATGA	1 cut(s)	1584
Cfr13I	GGNCC	3 cut(s)	236, 1076, 1224
Csp6I	GTAC	5 cut(s)	11, 178, 1097, 1213, 1604
CviAII	CATG	9 cut(s)	52, 323, 449, 1301, 1485, 1496, 1502, 1543, 1585
CviQI	GTAC	5 cut(s)	11, 178, 1097, 1213, 1604
DdeI	CTNAG	5 cut(s)	32, 522, 639, 1012, 1118
DpnI	GATC	2 cut(s)	490, 1311
DpnII	GATC	2 cut(s)	488, 1309
DriI	GACNNNNNGTC	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	655
Eam1105I	GACNNNNNGTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	655
Eco130I	CCWWGG	3 cut(s)	347, 1484, 1495
Eco24I	GRGCYC	1 cut(s)	528
Eco47I	GGWCC	2 cut(s)	236, 1224
Eco57I	CTGAAG	1 cut(s)	1149
EcoO109I	RGGNCCY	1 cut(s)	1076
EcoRI	GAATTC	3 cut(s)	144, 327, 462
EcoRII	CCWGG	3 cut(s)	232, 391, 1648
EcoT14I	CCWWGG	3 cut(s)	347, 1484, 1495
EcoT38I	GRGCYC	1 cut(s)	528
ErhI	CCWWGG	3 cut(s)	347, 1484, 1495
FaeI	CATG	9 cut(s)	55, 326, 452, 1304, 1488, 1499, 1505, 1546, 1588
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 1271, 1303
FatI	CATG	9 cut(s)	51, 322, 448, 1300, 1484, 1495, 1501, 1542, 1584
FauI	CCCGC	1 cut(s)	1162
FbaI	TGATCA	1 cut(s)	1309
Fnu4HI	GCNGC	1 cut(s)	1742
FokI	GGATG	4 cut(s)	746, 1467, 1565, 1593
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	1 cut(s)	1742
FspBI	CTAG	5 cut(s)	141, 686, 696, 701, 929
GluI	GCNGC	1 cut(s)	1742
GsaI	CCCAGC	2 cut(s)	480, 1520
GsuI	CTGGAG	2 cut(s)	171, 1308
HaeIII	GGCC	3 cut(s)	209, 1077, 1789
Hin1II	CATG	9 cut(s)	55, 326, 452, 1304, 1488, 1499, 1505, 1546, 1588
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	2 cut(s)	15, 25
HinfI	GANTC	4 cut(s)	373, 518, 711, 1679
HpaI	GTTAAC	1 cut(s)	297
HphI	GGTGA	5 cut(s)	94, 178, 272, 923, 979
Hpy166II	GTNNAC	3 cut(s)	297, 1097, 1465
Hpy188I	TCNGA	6 cut(s)	33, 523, 651, 710, 885, 1168
Hpy188III	TCNNGA	7 cut(s)	127, 188, 954, 1045, 1325, 1342, 1585
Hpy8I	GTNNAC	3 cut(s)	297, 1097, 1465
HpyAV	CCTTC	4 cut(s)	359, 412, 1543, 1755
HpyCH4III	ACNGT	7 cut(s)	133, 499, 847, 1094, 1426, 1462, 1597
HpyCH4V	TGCA	4 cut(s)	452, 998, 1441, 1448
HpyF3I	CTNAG	5 cut(s)	32, 522, 639, 1012, 1118
Hsp92II	CATG	9 cut(s)	55, 326, 452, 1304, 1488, 1499, 1505, 1546, 1588
Ksp22I	TGATCA	1 cut(s)	1309
KspAI	GTTAAC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	488, 1309
LmnI	GCTCC	2 cut(s)	634, 874
Lsp1109I	GCAGC	1 cut(s)	1728
LweI	GCATC	1 cut(s)	1498
MaeI	CTAG	5 cut(s)	141, 686, 696, 701, 929
MaeIII	GTNAC	8 cut(s)	127, 260, 370, 642, 716, 833, 931, 967
MalI	GATC	2 cut(s)	490, 1311
MbiI	CCGCTC	1 cut(s)	1157
MboI	GATC	2 cut(s)	488, 1309
MboII	GAAGA	5 cut(s)	12, 600, 672, 1600, 1740
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	528
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	7 cut(s)	144, 267, 327, 462, 825, 1024, 1345
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	367, 720
MmeI	TCCRAC	2 cut(s)	688, 1082
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MslI	CAYNNNNRTG	5 cut(s)	321, 1483, 1494, 1500, 1611
Msp20I	TGGCCA	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	281
MspR9I	CCNGG	3 cut(s)	234, 393, 1650
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	1450
MvaI	CCWGG	3 cut(s)	234, 393, 1650
NcoI	CCATGG	2 cut(s)	1484, 1495
NdeII	GATC	2 cut(s)	488, 1309
NlaIII	CATG	9 cut(s)	55, 326, 452, 1304, 1488, 1499, 1505, 1546, 1588
NlaIV	GGNNCC	5 cut(s)	229, 490, 572, 636, 876
NmeAIII	GCCGAG	1 cut(s)	1393
NmuCI	GTSAC	6 cut(s)	127, 260, 370, 642, 833, 967
PagI	TCATGA	1 cut(s)	1584
PcsI	WCGNNNNNNNCGW	1 cut(s)	1365
PctI	GAATGC	1 cut(s)	1450
PfeI	GAWTC	2 cut(s)	518, 1679
PflFI	GACNNNGTC	1 cut(s)	1172
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	1743
PleI	GAGTC	2 cut(s)	367, 719
PpsI	GAGTC	2 cut(s)	367, 719
PshBI	ATTAAT	2 cut(s)	219, 654
Psp6I	CCWGG	3 cut(s)	232, 391, 1648
PspFI	CCCAGC	2 cut(s)	476, 1516
PspGI	CCWGG	3 cut(s)	232, 391, 1648
PspN4I	GGNNCC	5 cut(s)	229, 490, 572, 636, 876
PspPI	GGNCC	3 cut(s)	236, 1076, 1224
PstI	CTGCAG	1 cut(s)	1443
PsuI	RGATCY	1 cut(s)	488
PsyI	GACNNNGTC	1 cut(s)	1172
RsaI	GTAC	5 cut(s)	12, 179, 1098, 1214, 1605
RsaNI	GTAC	5 cut(s)	11, 178, 1097, 1213, 1604
RseI	CAYNNNNRTG	5 cut(s)	321, 1483, 1494, 1500, 1611
SatI	GCNGC	1 cut(s)	1742
Sau3AI	GATC	2 cut(s)	488, 1309
Sau96I	GGNCC	3 cut(s)	236, 1076, 1224
SchI	GAGTC	2 cut(s)	367, 720
ScrFI	CCNGG	3 cut(s)	234, 393, 1650
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	1 cut(s)	1498
SfcI	CTRYAG	2 cut(s)	1216, 1439
SinI	GGWCC	2 cut(s)	236, 1224
SmiMI	CAYNNNNRTG	5 cut(s)	321, 1483, 1494, 1500, 1611
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	7 cut(s)	144, 267, 327, 462, 825, 1024, 1345
SsiI	CCGC	1 cut(s)	1155
SspMI	CTAG	5 cut(s)	141, 686, 696, 701, 929
StyD4I	CCNGG	3 cut(s)	232, 391, 1648
StyI	CCWWGG	3 cut(s)	347, 1484, 1495
TaaI	ACNGT	7 cut(s)	133, 499, 847, 1094, 1426, 1462, 1597
TaqI	TCGA	1 cut(s)	331
TasI	AATT	7 cut(s)	144, 267, 327, 462, 825, 1024, 1345
TatI	WGTACW	3 cut(s)	10, 177, 1603
TfiI	GAWTC	2 cut(s)	518, 1679
TscAI	CASTG	4 cut(s)	323, 1099, 1431, 1600
TseFI	GTSAC	6 cut(s)	127, 260, 370, 642, 833, 967
TseI	GCWGC	1 cut(s)	1741
Tsp45I	GTSAC	6 cut(s)	127, 260, 370, 642, 833, 967
TspDTI	ATGAA	5 cut(s)	394, 1132, 1562, 1601, 1655
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	4 cut(s)	323, 1099, 1431, 1600
Tth111I	GACNNNGTC	1 cut(s)	1172
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	236, 1224
VspI	ATTAAT	2 cut(s)	219, 654
XapI	RAATTY	3 cut(s)	144, 327, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XspI	CTAG	5 cut(s)	141, 686, 696, 701, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.