FvH4_3g15920

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017041
Physical Location & Seq
Forward (+)
10027337 .. 10029224
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15920.t1

Sequence Viewer

Length: 1359 bp
ATGATGAAGTTTGAGGTAATCAGAAGTGAAACAGTCAAGCCATCTTCTCCAACCCCCCATTATCTCAAACACTTCAAGCTTTCCCTTCTAGACCAACTTGCTCCTGTTGCTTACGAGCCCTTGGTTCTCTTCTACCCCTACAATGATCGTGATGTTACCTTCACACCTGCAAAGAGATCCCTCTGGATGAAGAAGTCACTGTCGGAAACTCTGACTCGTTTCTACCCTTTTGCTGGAAGAATCAAAGGAAACATCTCAATCGAATGCCACGACGATGGTGTTGACTATATGCAAGCTCGTGTCCATGGCCTTCTCTCAACTCTTTTAGCACAGCCTGATGCAGAGACACTGAAGCAGCTCCTTCCGGTAGCGATTGAGTTCCCGAAAGCAGGGACCGGGCCTCTGCTTCTTGTTCAGGAGAGCTTCTTTGATTGTGGTGGATTGGCAATTGGTGTGTGCATGTCACGTAAGTTAGGTGATGCAGCCTCACTTGGCACATTCATTATGTCATGGGCTGCTAGTGCTCTTGGATTTAGTCAAGCACTGCTTCCCGATTTCAACGCCTCGTTTTGGTTTCCACCAATGGATTGTTCCTCTGGCCACAACTCTTCTGTGGATCATATCGTCAAGAAGAGAACGGATGGTTGTGTCACAAAGAGGTTTGTGTTTGATGCATCTAAGATATGTGCCCTTCAGACCGAAGCAGCCAGTGCAAATGTGAAACAGCCAACGAATTTAGAAGCTGTCACAGCTCTTATTTGGAGATGCGCAGTGGCTGCAGCCACAAGATCAAGCTCCCTGCACAAGTCTCCTCCTAAGGTCTCTGTGTTGTCCCAATCTGTGGACATTCGCAAAAGGATCGTGCCGCCTTTGTCCGATGACTCTATAGGAAACCTTGTGGGATACTTTGCTGCACAGGCAAATGAGAGTGAGTTGGAGCTGCAAGGCTTGGTTGCTCAACTAAGGACAGGGCTCAAAGAGGTGAGCAACAATTGTGCCCAAATACTTAAGGGGAGTCATGGATCTCGAGGGTTTGTCGAATCTTCCAAAGAGGCAGGTGATTTCTTCCAAAGAGATGACATTATGAACCTACAAGTCTGCACAGGCTTGTGTGATTATAAGGTATTGTATGAGGTGAATTTTGGGTGGGGAAGGCCAATTTGGGTGAGTAACTTTCCTAGTGGTTTAAACAGAAATGTATCATCTTTGGTGGGTACAAGAAAGGATGATGGTATAGAGGCTTGGGTGACCTTGATTGAGGAAGACATGGCTGCTTTTGAACATGACCAGGAGCTTCTTGCATTTGCTATGGTGAATCCAAGTGTCCTAGAACCCATTGCATTGAAGTCTGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

453

Amino Acids

49.58

Weight (kDa)

6.17

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 432 2.8e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26040
fragaria_vesca FvH4_3g15920
malus_domestica MD05G1218200.v1.1 MD16G1109400.v1.1
rosa_chinensis RchiOBHm_Chr5g0026761
rosa_laevigata RLG00000032959
rosa_multiflora Rmu_sc0001493.1_g000016 Rmu_ssc0000172.1_g000028 Rmu_ssc0000172.1_g000030
rosa_roxburghii Rroxscaffold_1G00052730
rosa_rugosa Rorug05G0095400
rosa_samantha Rh5DG187500
rosa_wichuraiana Rw5G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1119
AarI CACCTGC 2 cut(s) 175, 1046
Acc16I TGCGCA 1 cut(s) 769
Acc36I ACCTGC 2 cut(s) 175, 1046
AccB7I CCANNNNNTGG 1 cut(s) 841
AciI CCGC 1 cut(s) 866
AclWI GGATC 4 cut(s) 171, 624, 866, 1030
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 2 cut(s) 733, 1138
AcuI CTGAAG 2 cut(s) 371, 677
AfaI GTAC 1 cut(s) 1216
AfiI CCNNNNNNNGG 4 cut(s) 233, 389, 570, 841
AflII CTTAAG 1 cut(s) 1007
AgsI TTSAA 4 cut(s) 76, 559, 1280, 1345
AjnI CCWGG 1 cut(s) 1287
AjuI GAANNNNNNNTTGG 4 cut(s) 574, 606, 1144, 1176
AluBI AGCT 9 cut(s) 79, 296, 358, 423, 743, 752, 795, 940, 1294
AluI AGCT 9 cut(s) 79, 296, 358, 423, 743, 752, 795, 940, 1294
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 3 cut(s) 338, 813, 826
AlwI GGATC 4 cut(s) 171, 624, 866, 1030
AlwNI CAGNNNCTG 1 cut(s) 776
Ama87I CYCGRG 1 cut(s) 1026
AoxI GGCC 4 cut(s) 307, 398, 598, 1154
ApeKI GCWGC 9 cut(s) 355, 482, 515, 704, 776, 779, 911, 940, 1271
ApoI RAATTY 2 cut(s) 733, 1138
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 2 cut(s) 393, 398
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 7 cut(s) 488, 994, 1070, 1147, 1177, 1258, 1324
AvaI CYCGRG 1 cut(s) 1026
AvaII GGWCC 1 cut(s) 393
AxyI CCTNAGG 1 cut(s) 816
BaeGI GKGCMC 2 cut(s) 691, 1000
BalI TGGCCA 1 cut(s) 600
BanII GRGCYC 2 cut(s) 120, 975
BauI CACGAG 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 1269
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 9 cut(s) 367, 494, 502, 716, 763, 791, 898, 927, 1258
BccI CCATC 4 cut(s) 49, 269, 635, 1223
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BciT130I CCWGG 1 cut(s) 1289
BciVI GTATCC 1 cut(s) 896
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 3 cut(s) 338, 813, 826
BfaI CTAG 4 cut(s) 89, 519, 1179, 1328
BfmI CTRYAG 2 cut(s) 777, 885
BfrI CTTAAG 1 cut(s) 1007
BfuAI ACCTGC 2 cut(s) 175, 1046
BfuI GTATCC 1 cut(s) 896
Bme1390I CCNGG 2 cut(s) 397, 1289
Bme18I GGWCC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 1026
BmgT120I GGNCC 2 cut(s) 393, 398
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 2 cut(s) 397, 1289
BmsI GCATC 5 cut(s) 328, 469, 661, 683, 755
BpiI GAAGAC 1 cut(s) 1269
BpuMI CCSGG 1 cut(s) 397
BsaAI YACGTR 1 cut(s) 467
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 2 cut(s) 120, 304
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 389, 570, 841
Bse1I ACTGG 1 cut(s) 708
Bse21I CCTNAGG 1 cut(s) 816
Bse3DI GCAATG 1 cut(s) 1335
BseBI CCWGG 1 cut(s) 1289
BseDI CCNNGG 2 cut(s) 120, 304
BseGI GGATG 3 cut(s) 192, 646, 1231
BseLI CCNNNNNNNGG 4 cut(s) 233, 389, 570, 841
BseMI GCAATG 1 cut(s) 1335
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 1 cut(s) 801
BseSI GKGCMC 2 cut(s) 691, 1000
BseXI GCAGC 9 cut(s) 367, 494, 502, 716, 763, 791, 898, 927, 1258
BsgI GTGCAG 3 cut(s) 785, 897, 1084
BshFI GGCC 4 cut(s) 309, 400, 600, 1156
BsiHKAI GWGCWC 1 cut(s) 526
BsiHKCI CYCGRG 1 cut(s) 1026
BsiSI CCGG 2 cut(s) 365, 396
BslFI GGGAC 2 cut(s) 406, 817
BslI CCNNNNNNNGG 4 cut(s) 233, 389, 570, 841
BsmAI GTCTC 3 cut(s) 338, 813, 826
BsmFI GGGAC 2 cut(s) 406, 817
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 4 cut(s) 309, 400, 600, 1156
Bso31I GGTCTC 1 cut(s) 826
BsoBI CYCGRG 1 cut(s) 1026
Bsp1286I GDGCHC 5 cut(s) 120, 526, 691, 975, 1000
Bsp143I GATC 6 cut(s) 145, 176, 616, 788, 858, 1022
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 1 cut(s) 866
BspANI GGCC 4 cut(s) 309, 400, 600, 1156
BspLI GGNNCC 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 781
BspMI ACCTGC 2 cut(s) 175, 1046
BspPI GGATC 4 cut(s) 171, 624, 866, 1030
BspTI CTTAAG 1 cut(s) 1007
BspTNI GGTCTC 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 1335
BsrI ACTGG 1 cut(s) 708
BssECI CCNNGG 2 cut(s) 120, 304
BssMI GATC 6 cut(s) 145, 176, 616, 788, 858, 1022
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 120, 304
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 1289
Bst4CI ACNGT 2 cut(s) 34, 201
Bst6I CTCTTC 3 cut(s) 134, 613, 626
BstAFI CTTAAG 1 cut(s) 1007
BstAPI GCANNNNNTGC 2 cut(s) 710, 776
BstBAI YACGTR 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 678, 816, 962
BstDSI CCRYGG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 1246
BstF5I GGATG 3 cut(s) 192, 646, 1231
BstHHI GCGC 1 cut(s) 770
BstKTI GATC 6 cut(s) 148, 179, 619, 791, 861, 1025
BstMAI GTCTC 3 cut(s) 338, 813, 826
BstMBI GATC 6 cut(s) 145, 176, 616, 788, 858, 1022
BstMWI GCNNNNNNNGC 6 cut(s) 107, 521, 710, 749, 776, 917
BstNI CCWGG 1 cut(s) 1289
BstNSI RCATGY 1 cut(s) 463
BstPI GGTNACC 1 cut(s) 1246
BstSCI CCNGG 2 cut(s) 395, 1287
BstSFI CTRYAG 2 cut(s) 777, 885
BstSLI GKGCMC 2 cut(s) 691, 1000
BstV1I GCAGC 9 cut(s) 367, 494, 502, 716, 763, 791, 898, 927, 1258
BstV2I GAAGAC 1 cut(s) 1269
BstX2I RGATCY 2 cut(s) 176, 1022
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 2 cut(s) 176, 1022
Bsu36I CCTNAGG 1 cut(s) 816
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 4 cut(s) 309, 400, 600, 1156
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 3 cut(s) 192, 646, 1231
BtsI GCAGTG 2 cut(s) 542, 777
BtsIMutI CAGTG 5 cut(s) 197, 347, 542, 715, 777
BveI ACCTGC 2 cut(s) 175, 1046
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 1 cut(s) 770
Cfr13I GGNCC 2 cut(s) 393, 398
Csp6I GTAC 1 cut(s) 1215
CviAII CATG 6 cut(s) 305, 460, 510, 1019, 1267, 1283
CviQI GTAC 1 cut(s) 1215
DdeI CTNAG 3 cut(s) 678, 816, 962
DpnI GATC 6 cut(s) 147, 178, 618, 790, 860, 1024
DpnII GATC 6 cut(s) 145, 176, 616, 788, 858, 1022
DraI TTTAAA 1 cut(s) 1188
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 3 cut(s) 134, 613, 626
EarI CTCTTC 3 cut(s) 134, 613, 626
Eco130I CCWWGG 2 cut(s) 120, 304
Eco24I GRGCYC 2 cut(s) 120, 975
Eco31I GGTCTC 1 cut(s) 826
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 371, 677
Eco81I CCTNAGG 1 cut(s) 816
Eco88I CYCGRG 1 cut(s) 1026
Eco91I GGTNACC 1 cut(s) 1246
EcoO65I GGTNACC 1 cut(s) 1246
EcoRII CCWGG 1 cut(s) 1287
EcoT14I CCWWGG 2 cut(s) 120, 304
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 120, 975
ErhI CCWWGG 2 cut(s) 120, 304
FaeI CATG 6 cut(s) 308, 463, 513, 1022, 1270, 1286
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 2 cut(s) 406, 817
FatI CATG 6 cut(s) 304, 459, 509, 1018, 1266, 1282
FokI GGATG 3 cut(s) 199, 653, 1238
FriOI GRGCYC 2 cut(s) 120, 975
FspBI CTAG 4 cut(s) 89, 519, 1179, 1328
FspI TGCGCA 1 cut(s) 769
GlaI GCGC 1 cut(s) 769
HaeIII GGCC 4 cut(s) 309, 400, 600, 1156
HapII CCGG 2 cut(s) 365, 396
HhaI GCGC 1 cut(s) 770
Hin1II CATG 6 cut(s) 308, 463, 513, 1022, 1270, 1286
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 6 cut(s) 214, 240, 881, 1015, 1040, 1315
HpaII CCGG 2 cut(s) 365, 396
HphI GGTGA 7 cut(s) 488, 994, 1070, 1147, 1177, 1258, 1324
Hpy166II GTNNAC 2 cut(s) 283, 844
Hpy188I TCNGA 5 cut(s) 23, 205, 213, 696, 877
Hpy188III TCNNGA 8 cut(s) 89, 149, 184, 382, 416, 551, 628, 1026
Hpy8I GTNNAC 2 cut(s) 283, 844
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 6 cut(s) 95, 169, 320, 371, 701, 1146
HpyCH4III ACNGT 2 cut(s) 34, 201
HpyCH4IV ACGT 1 cut(s) 466
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 521, 710, 749, 776, 917
HpyF3I CTNAG 3 cut(s) 678, 816, 962
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 6 cut(s) 308, 463, 513, 1022, 1270, 1286
HspAI GCGC 1 cut(s) 768
Kzo9I GATC 6 cut(s) 145, 176, 616, 788, 858, 1022
LmnI GCTCC 5 cut(s) 106, 363, 800, 937, 1291
Lsp1109I GCAGC 9 cut(s) 367, 494, 502, 716, 763, 791, 898, 927, 1258
LweI GCATC 5 cut(s) 328, 469, 661, 683, 755
MaeI CTAG 4 cut(s) 89, 519, 1179, 1328
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 7 cut(s) 154, 195, 462, 649, 745, 1169, 1246
MalI GATC 6 cut(s) 147, 178, 618, 790, 860, 1024
MboI GATC 6 cut(s) 145, 176, 616, 788, 858, 1022
MboII GAAGA 9 cut(s) 36, 121, 202, 249, 600, 643, 1035, 1057, 1274
MfeI CAATTG 2 cut(s) 447, 991
MflI RGATCY 2 cut(s) 176, 1022
MhlI GDGCHC 5 cut(s) 120, 526, 691, 975, 1000
MlsI TGGCCA 1 cut(s) 600
MluCI AATT 5 cut(s) 447, 733, 991, 1138, 1158
MluNI TGGCCA 1 cut(s) 600
MlyI GAGTC 3 cut(s) 208, 875, 1024
MmeI TCCRAC 3 cut(s) 74, 183, 915
Mox20I TGGCCA 1 cut(s) 600
Mph1103I ATGCAT 1 cut(s) 676
MscI TGGCCA 1 cut(s) 600
MseI TTAA 2 cut(s) 1008, 1187
MslI CAYNNNNRTG 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 600
MspCI CTTAAG 1 cut(s) 1007
MspI CCGG 2 cut(s) 365, 396
MspR9I CCNGG 2 cut(s) 397, 1289
MssI GTTTAAAC 1 cut(s) 1188
MunI CAATTG 2 cut(s) 447, 991
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 1 cut(s) 1289
MwoI GCNNNNNNNGC 6 cut(s) 107, 521, 710, 749, 776, 917
NciI CCSGG 1 cut(s) 397
NcoI CCATGG 1 cut(s) 304
NdeII GATC 6 cut(s) 145, 176, 616, 788, 858, 1022
NlaIII CATG 6 cut(s) 308, 463, 513, 1022, 1270, 1286
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 5 cut(s) 195, 462, 649, 745, 1246
NsbI TGCGCA 1 cut(s) 769
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 1026
PaqCI CACCTGC 2 cut(s) 175, 1046
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 3 cut(s) 240, 1040, 1315
PflMI CCANNNNNTGG 1 cut(s) 841
PleI GAGTC 3 cut(s) 208, 875, 1023
PmeI GTTTAAAC 1 cut(s) 1188
PpsI GAGTC 3 cut(s) 208, 875, 1023
Ppu21I YACGTR 1 cut(s) 467
PsiI TTATAA 1 cut(s) 1119
Psp6I CCWGG 1 cut(s) 1287
PspEI GGTNACC 1 cut(s) 1246
PspGI CCWGG 1 cut(s) 1287
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 2 cut(s) 393, 398
PstI CTGCAG 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 2 cut(s) 176, 1022
RsaI GTAC 1 cut(s) 1216
RsaNI GTAC 1 cut(s) 1215
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 1008, 1187
Sau3AI GATC 6 cut(s) 145, 176, 616, 788, 858, 1022
Sau96I GGNCC 2 cut(s) 393, 398
SchI GAGTC 3 cut(s) 208, 875, 1024
ScrFI CCNGG 2 cut(s) 397, 1289
SduI GDGCHC 5 cut(s) 120, 526, 691, 975, 1000
SfaNI GCATC 5 cut(s) 328, 469, 661, 683, 755
SfcI CTRYAG 2 cut(s) 777, 885
Sfr274I CTCGAG 1 cut(s) 1026
SinI GGWCC 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 1026
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 1007, 1026
SmoI CTYRAG 2 cut(s) 1007, 1026
Sse9I AATT 5 cut(s) 447, 733, 991, 1138, 1158
SsiI CCGC 1 cut(s) 866
SspMI CTAG 4 cut(s) 89, 519, 1179, 1328
StyD4I CCNGG 2 cut(s) 395, 1287
StyI CCWWGG 2 cut(s) 120, 304
TaaI ACNGT 2 cut(s) 34, 201
TaiI ACGT 1 cut(s) 469
TaqI TCGA 3 cut(s) 261, 1027, 1038
TaqII GACCGA 1 cut(s) 713
TasI AATT 5 cut(s) 447, 733, 991, 1138, 1158
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 3 cut(s) 240, 1040, 1315
Tru1I TTAA 2 cut(s) 1008, 1187
Tru9I TTAA 2 cut(s) 1008, 1187
TscAI CASTG 5 cut(s) 204, 354, 549, 715, 777
TseFI GTSAC 5 cut(s) 195, 462, 649, 745, 1246
TseI GCWGC 9 cut(s) 355, 482, 515, 704, 776, 779, 911, 940, 1271
Tsp45I GTSAC 5 cut(s) 195, 462, 649, 745, 1246
TspDTI ATGAA 4 cut(s) 20, 203, 490, 1100
TspGWI ACGGA 1 cut(s) 653
TspRI CASTG 5 cut(s) 204, 354, 549, 715, 777
Van91I CCANNNNNTGG 1 cut(s) 841
Vha464I CTTAAG 1 cut(s) 1007
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 2 cut(s) 733, 1138
XbaI TCTAGA 1 cut(s) 88
XceI RCATGY 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 1026
XspI CTAG 4 cut(s) 89, 519, 1179, 1328
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.