MD05G1218200.v1.1

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0017041
Physical Location & Seq
Reverse (-)
34898955 .. 34900295
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1218200.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGGAGTTTGAGATGATCAAGAGAGAAACCCTAAAACCATCCTCCCCAACCCCTCAATATCTTAGAAACTTCAAGCTTTCCCTTTTGAATCAACTTAGTCCTGCTGCTTATGAATCCTTGGTCCTCTTCTACCCCAGAAATGACAGTACAACCCCCCAAATCTCCCTCCGGATCCTCAAGAAATCGCTGTCGGAAACCCTAGTTCGCTTCTACCCGCTTGCCGGAAGAATGAAAGATAACATCTCCGTTGATTGCAATGATTATGGAGTTGACTATGTTGAAGCCAAAGTCAATGGTCTGCTCTCTACGTTCCTATCACAACCTGATGCTGGGACATTGAGACAGCTCCTTCCAGTAGGGACCGAGTCCCCTGAAGCTGGCAAGGGAGCTCTGCTTCTAGTTCAGGCCAACGTTTTCGGTTGCGGTGGATTGGCAATTGGTATTTGTATGTCACATAAGTTGGCTGATGCAGCCTCATTGAGCACATTCATTATGTCCTGGTCAGCAACTGCTCTTGGATTCAGTCAAGCTCTCCTTCCAGATTTCACTGCATCATTTCGATTTCCACCAATCGATTATTCCTCATCATTCCACCAGTCCTCACCAGTAGATGCAAAGAGAGAGAATTGTGTCACAAAGAGGTTTGTGTTCAATGCATCGAAGATTTCTGCTCTTAGGACTAAAGCAGCCAGTACGATCGTGGATCAACCTACGCAGGCCGAAGCTGTCACAGCCCTCATTTGGAGATGTGCAGTTGCTGCGTCAAGATCATCAAACTCGCTGCAGCCGCCTCCTAAGCTATCTGTGTTGTCACAATCCGTGGACATTCGAAAAAGTGTCGTGCCGCCCCTGTCAGATGACTCCATAGGAAACCTCATGGGGTACTTCGCGGCACAGACAGACGAGAATGAGTTGGAGCTGCAAGGCTTGGTAGCTCAGCTAAGGAGAGGAATCAAAGAATTGAGCAACAATTACGCTAAAAGACCTGGAAAGGATCAGGCGATTCGCGAGTCTGTCAAAGAGGTACATAATAATTTTGTCAAAAGAGATGATACTACAAGTTTCTATGTGGGAACAGATTTGGGTAATTATAAGTTACTGTATGAGGTAAATTTTGGGTGGGGAAAGCCAATCTGGCTGAGTAATGTCCCTGCTGCTTCAAGCACTAATGTTGCCTATTTGGTGAGCACAAGAAAGGATGATGGCATAGAGGCTTGGGTGACTTTGAGTGAGGAAGACATGGCTGCTTTTGAAAGGAATCAGGAGCTTCTTGCTTTTGCATTACTGAATCCAAGTGTATTATTACAACATAATAACTTAGCACTCAAGTCTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

447

Amino Acids

48.97

Weight (kDa)

7.58

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 423 6.7e-90 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26040
fragaria_vesca FvH4_3g15920
malus_domestica MD05G1218200.v1.1 MD16G1109400.v1.1
rosa_chinensis RchiOBHm_Chr5g0026761
rosa_laevigata RLG00000032959
rosa_multiflora Rmu_sc0001493.1_g000016 Rmu_ssc0000172.1_g000028 Rmu_ssc0000172.1_g000030
rosa_roxburghii Rroxscaffold_1G00052730
rosa_rugosa Rorug05G0095400
rosa_samantha Rh5DG187500
rosa_wichuraiana Rw5G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1092
AccII CGCG 2 cut(s) 890, 1008
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 5 cut(s) 215, 423, 788, 845, 890
AclI AACGTT 1 cut(s) 411
AclWI GGATC 4 cut(s) 166, 179, 711, 1002
AcsI RAATTY 1 cut(s) 1111
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 4 cut(s) 148, 694, 884, 1026
AfiI CCNNNNNNNGG 4 cut(s) 221, 329, 377, 741
AgsI TTSAA 6 cut(s) 73, 88, 281, 652, 1161, 1253
AjnI CCWGG 2 cut(s) 497, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 562, 594
Alw21I GWGCWC 3 cut(s) 391, 485, 1190
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 4 cut(s) 166, 179, 711, 1002
AlwNI CAGNNNCTG 2 cut(s) 509, 758
Aor13HI TCCGGA 1 cut(s) 168
AoxI GGCC 2 cut(s) 405, 717
ApeKI GCWGC 9 cut(s) 104, 470, 686, 758, 781, 784, 919, 1154, 1244
ApoI RAATTY 1 cut(s) 1111
AspS9I GGNCC 2 cut(s) 121, 360
AsuHPI GGTGA 3 cut(s) 594, 1195, 1231
AsuII TTCGAA 1 cut(s) 829
AvaII GGWCC 2 cut(s) 121, 360
BamHI GGATCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 1242
Bbv12I GWGCWC 3 cut(s) 391, 485, 1190
BbvI GCAGC 9 cut(s) 91, 482, 698, 745, 768, 796, 906, 1141, 1231
BccI CCATC 2 cut(s) 46, 1196
BciT130I CCWGG 2 cut(s) 499, 987
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 2 cut(s) 200, 398
BfmI CTRYAG 1 cut(s) 782
BglI GCCNNNNNGGC 1 cut(s) 1135
BlpI GCTNAGC 1 cut(s) 936
Bme1390I CCNGG 2 cut(s) 499, 987
Bme18I GGWCC 2 cut(s) 121, 360
BmgT120I GGNCC 2 cut(s) 121, 360
BmiI GGNNCC 2 cut(s) 173, 361
BmrFI CCNGG 2 cut(s) 499, 987
BmsI GCATC 5 cut(s) 316, 457, 560, 601, 665
BpiI GAAGAC 1 cut(s) 1242
Bpu10I CCTNAGC 2 cut(s) 795, 941
Bpu1102I GCTNAGC 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 829
BpuEI CTTGAG 2 cut(s) 161, 1310
Bsa29I ATCGAT 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 117, 819
BsaWI WCCGGW 1 cut(s) 168
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 329, 377, 741
Bse1I ACTGG 4 cut(s) 353, 595, 605, 690
Bse3DI GCAATG 1 cut(s) 262
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 2 cut(s) 499, 987
BseCI ATCGAT 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 117, 819
BseGI GGATG 2 cut(s) 38, 1204
BseLI CCNNNNNNNGG 4 cut(s) 221, 329, 377, 741
BseMI GCAATG 1 cut(s) 262
BseMII CTCAG 2 cut(s) 950, 1130
BseNI ACTGG 4 cut(s) 353, 595, 605, 690
BseXI GCAGC 9 cut(s) 91, 482, 698, 745, 768, 796, 906, 1141, 1231
BseYI CCCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 2 cut(s) 890, 1008
Bsh1285I CGRYCG 1 cut(s) 699
BshFI GGCC 2 cut(s) 407, 719
BshVI ATCGAT 1 cut(s) 573
BsiEI CGRYCG 1 cut(s) 699
BsiHKAI GWGCWC 3 cut(s) 391, 485, 1190
BsiSI CCGG 2 cut(s) 169, 222
BslFI GGGAC 4 cut(s) 346, 352, 373, 1133
BslI CCNNNNNNNGG 4 cut(s) 221, 329, 377, 741
BsmAI GTCTC 1 cut(s) 334
BsmFI GGGAC 4 cut(s) 346, 352, 373, 1133
BsnI GGCC 2 cut(s) 407, 719
Bsp119I TTCGAA 1 cut(s) 829
Bsp1286I GDGCHC 3 cut(s) 391, 485, 1190
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 6 cut(s) 15, 171, 696, 703, 767, 994
Bsp1720I GCTNAGC 1 cut(s) 936
Bsp68I TCGCGA 1 cut(s) 1008
BspACI CCGC 5 cut(s) 215, 423, 788, 845, 890
BspANI GGCC 2 cut(s) 407, 719
BspCNI CTCAG 2 cut(s) 949, 1131
BspDI ATCGAT 1 cut(s) 573
BspEI TCCGGA 1 cut(s) 168
BspFNI CGCG 2 cut(s) 890, 1008
BspLI GGNNCC 2 cut(s) 173, 361
BspMAI CTGCAG 1 cut(s) 786
BspPI GGATC 4 cut(s) 166, 179, 711, 1002
BspT104I TTCGAA 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 262
BsrI ACTGG 4 cut(s) 353, 595, 605, 690
BssECI CCNNGG 2 cut(s) 117, 819
BssMI GATC 6 cut(s) 15, 171, 696, 703, 767, 994
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 499, 987
Bst4CI ACNGT 2 cut(s) 146, 1101
Bst6I CTCTTC 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 758
BstBI TTCGAA 1 cut(s) 829
BstC8I GCNNGC 3 cut(s) 219, 379, 717
BstDEI CTNAG 8 cut(s) 62, 95, 674, 795, 936, 941, 1139, 1318
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 2 cut(s) 38, 1204
BstFNI CGCG 2 cut(s) 890, 1008
BstKTI GATC 6 cut(s) 18, 174, 699, 706, 770, 997
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 6 cut(s) 15, 171, 696, 703, 767, 994
BstMCI CGRYCG 1 cut(s) 699
BstMWI GCNNNNNNNGC 6 cut(s) 470, 731, 758, 787, 796, 1135
BstNI CCWGG 2 cut(s) 499, 987
BstSCI CCNGG 2 cut(s) 497, 985
BstSFI CTRYAG 1 cut(s) 782
BstUI CGCG 2 cut(s) 890, 1008
BstV1I GCAGC 9 cut(s) 91, 482, 698, 745, 768, 796, 906, 1141, 1231
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 573
BsuRI GGCC 2 cut(s) 407, 719
BsuTUI ATCGAT 1 cut(s) 573
BtgI CCRYGG 1 cut(s) 819
BtsCI GGATG 2 cut(s) 38, 1204
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 546
BtuMI TCGCGA 1 cut(s) 1008
Cac8I GCNNGC 3 cut(s) 219, 379, 717
CaiI CAGNNNCTG 2 cut(s) 509, 758
Cfr13I GGNCC 2 cut(s) 121, 360
ClaI ATCGAT 1 cut(s) 573
CseI GACGC 1 cut(s) 750
Csp6I GTAC 4 cut(s) 147, 693, 883, 1025
CviAII CATG 2 cut(s) 877, 1240
CviQI GTAC 4 cut(s) 147, 693, 883, 1025
DdeI CTNAG 8 cut(s) 62, 95, 674, 795, 936, 941, 1139, 1318
DpnI GATC 6 cut(s) 17, 173, 698, 705, 769, 996
DpnII GATC 6 cut(s) 15, 171, 696, 703, 767, 994
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 121, 360
Eco53kI GAGCTC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 497, 985
EcoT14I CCWWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 880, 1243
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 4 cut(s) 346, 352, 373, 1133
FatI CATG 2 cut(s) 876, 1239
FauI CCCGC 1 cut(s) 222
FbaI TGATCA 1 cut(s) 15
FokI GGATG 2 cut(s) 25, 1211
FriOI GRGCYC 1 cut(s) 391
FspBI CTAG 2 cut(s) 200, 398
GsaI CCCAGC 1 cut(s) 333
HaeIII GGCC 2 cut(s) 407, 719
HapII CCGG 2 cut(s) 169, 222
HgaI GACGC 1 cut(s) 750
Hin1II CATG 2 cut(s) 880, 1243
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 2 cut(s) 169, 222
HphI GGTGA 3 cut(s) 594, 1195, 1231
Hpy166II GTNNAC 2 cut(s) 271, 823
Hpy188I TCNGA 2 cut(s) 193, 856
Hpy188III TCNNGA 7 cut(s) 19, 169, 178, 539, 765, 1007, 1262
Hpy8I GTNNAC 2 cut(s) 271, 823
HpyAV CCTTC 2 cut(s) 359, 545
HpyCH4III ACNGT 2 cut(s) 146, 1101
HpyCH4IV ACGT 2 cut(s) 308, 411
HpyCH4V TGCA 9 cut(s) 255, 470, 551, 614, 656, 752, 784, 922, 1280
HpyF10VI GCNNNNNNNGC 6 cut(s) 470, 731, 758, 787, 796, 1135
HpyF3I CTNAG 8 cut(s) 62, 95, 674, 795, 936, 941, 1139, 1318
HpySE526I ACGT 2 cut(s) 308, 411
Hsp92II CATG 2 cut(s) 880, 1243
Kpn2I TCCGGA 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 6 cut(s) 15, 171, 696, 703, 767, 994
LmnI GCTCC 4 cut(s) 351, 386, 916, 1264
Lsp1109I GCAGC 9 cut(s) 91, 482, 698, 745, 768, 796, 906, 1141, 1231
LweI GCATC 5 cut(s) 316, 457, 560, 601, 665
MaeI CTAG 2 cut(s) 200, 398
MaeII ACGT 2 cut(s) 308, 411
MaeIII GTNAC 6 cut(s) 450, 631, 727, 810, 1095, 1219
MalI GATC 6 cut(s) 17, 173, 698, 705, 769, 996
MboI GATC 6 cut(s) 15, 171, 696, 703, 767, 994
MboII GAAGA 4 cut(s) 118, 237, 673, 1247
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 3 cut(s) 391, 485, 1190
MluCI AATT 7 cut(s) 435, 625, 959, 970, 1033, 1087, 1111
MlyI GAGTC 3 cut(s) 374, 854, 1019
MmeI TCCRAC 2 cut(s) 171, 894
Mph1103I ATGCAT 1 cut(s) 658
MroI TCCGGA 1 cut(s) 168
MseI TTAA 1 cut(s) 1339
MspI CCGG 2 cut(s) 169, 222
MspR9I CCNGG 2 cut(s) 499, 987
MunI CAATTG 1 cut(s) 435
MvaI CCWGG 2 cut(s) 499, 987
MvnI CGCG 2 cut(s) 890, 1008
MwoI GCNNNNNNNGC 6 cut(s) 470, 731, 758, 787, 796, 1135
NdeII GATC 6 cut(s) 15, 171, 696, 703, 767, 994
NlaIII CATG 2 cut(s) 880, 1243
NlaIV GGNNCC 2 cut(s) 173, 361
NmuCI GTSAC 5 cut(s) 450, 631, 727, 810, 1219
NruI TCGCGA 1 cut(s) 1008
NsiI ATGCAT 1 cut(s) 658
NspV TTCGAA 1 cut(s) 829
PfeI GAWTC 7 cut(s) 88, 113, 519, 951, 1003, 1258, 1288
PflFI GACNNNGTC 1 cut(s) 364
Ple19I CGATCG 1 cut(s) 699
PleI GAGTC 3 cut(s) 373, 854, 1018
PpsI GAGTC 3 cut(s) 373, 854, 1018
PsiI TTATAA 1 cut(s) 1092
Psp124BI GAGCTC 1 cut(s) 391
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 497, 985
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 2 cut(s) 497, 985
PspN4I GGNNCC 2 cut(s) 173, 361
PspPI GGNCC 2 cut(s) 121, 360
PstI CTGCAG 1 cut(s) 786
PstNI CAGNNNCTG 2 cut(s) 509, 758
PsuI RGATCY 1 cut(s) 171
PsyI GACNNNGTC 1 cut(s) 364
PvuI CGATCG 1 cut(s) 699
RruI TCGCGA 1 cut(s) 1008
RsaI GTAC 4 cut(s) 148, 694, 884, 1026
RsaNI GTAC 4 cut(s) 147, 693, 883, 1025
SacI GAGCTC 1 cut(s) 391
SaqAI TTAA 1 cut(s) 1339
Sau3AI GATC 6 cut(s) 15, 171, 696, 703, 767, 994
Sau96I GGNCC 2 cut(s) 121, 360
SchI GAGTC 3 cut(s) 374, 854, 1019
ScrFI CCNGG 2 cut(s) 499, 987
SduI GDGCHC 3 cut(s) 391, 485, 1190
SfaNI GCATC 5 cut(s) 316, 457, 560, 601, 665
SfcI CTRYAG 1 cut(s) 782
SfuI TTCGAA 1 cut(s) 829
SinI GGWCC 2 cut(s) 121, 360
SmlI CTYRAG 2 cut(s) 176, 1325
SmoI CTYRAG 2 cut(s) 176, 1325
Sse9I AATT 7 cut(s) 435, 625, 959, 970, 1033, 1087, 1111
SsiI CCGC 5 cut(s) 215, 423, 788, 845, 890
SspMI CTAG 2 cut(s) 200, 398
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 2 cut(s) 497, 985
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 146, 1101
TaiI ACGT 2 cut(s) 311, 414
TaqI TCGA 4 cut(s) 559, 573, 659, 829
TaqII GACCGA 1 cut(s) 377
TasI AATT 7 cut(s) 435, 625, 959, 970, 1033, 1087, 1111
TatI WGTACW 1 cut(s) 146
TauI GCSGC 3 cut(s) 790, 847, 893
TfiI GAWTC 7 cut(s) 88, 113, 519, 951, 1003, 1258, 1288
Tru1I TTAA 1 cut(s) 1339
Tru9I TTAA 1 cut(s) 1339
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 5 cut(s) 450, 631, 727, 810, 1219
TseI GCWGC 9 cut(s) 104, 470, 686, 758, 781, 784, 919, 1154, 1244
Tsp45I GTSAC 5 cut(s) 450, 631, 727, 810, 1219
TspDTI ATGAA 3 cut(s) 126, 245, 478
TspGWI ACGGA 2 cut(s) 235, 808
TspRI CASTG 1 cut(s) 553
Tth111I GACNNNGTC 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 121, 360
XapI RAATTY 1 cut(s) 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XspI CTAG 2 cut(s) 200, 398
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.