RLG00000032959

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017041
Physical Location & Seq
Forward (+)
21373858 .. 21375213
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032959

Sequence Viewer

Length: 1356 bp
ATGAAGTTTGAGGTAATCAGAAGTGAAACCATTAAGCCATCTTCTCCAACCCCCCATTATCTCAAACACTTCAAGCTTTCCCTTTTAGACCAACTTGCTCCTGTTGCTTATGAGCCGTTGGTTCTCTTCTACCCCTACAATGATCGTGACGTTACATTCACACCTGCAAAGAGATCCCTCTGGATGAAGAAGTCACTGTCCGAAACTCTCACTCGTTTCTACCCTTTTGCTGGAAGAATCAAAGAAAACATCTCAATCGAATGCCACGATGATGGTGTTGACTATGTGGAAGCTCGTGTCCATGGCCTTCTCTCCACCCTTTTAGCACAACCTGATGCCGAGGCACTGAGGCAGCTCCTTCCGGTAGAGATTGAGTCCCCGCAAGCAGGGACCGGGCCTCTGCTTCTTGTTCAGGAGAACTTTTTTGATTGTGGTGGATTGGCAATTGTTGTGTGCATGTCACGGAAGTTGGGTGATGCAGCCTCGCTGAGTACATTCCTTATGTCATGGGCTGCTAGTGCTCTTGGATTTAGTCATGCACTGCTTCCCGATTTCAACGCCTCATTTCGGTTCCCACCAATGGATTGTTCCTCTGCCCACAACTCTGCTGTGGATCATATCATCAAGAAGAGAATGAATGGTTGTGTCACAAAGAGGTTTGTGTTTGATGCATCAAAAATTGGCGCCCTTCAGACCAAAGCAGCCAGTGCAAATGTGAAACAGCCCACGAATTCGGAAGCTGTCACAGCTCTCATTTGGAGATGTGCAGTGGCTGCAACCTCAAGATCAAGCTTACTGCACAAGTCTCCTCCTAAGCTCTCTGTGTTGTCCCAATCTGTGGATATTCGCAAAAGGGTCGTGCCGCCTTTGTCGGATGACTCTATAGGGAACCTTGTGGGATACTTTGCTGCACAGGCAAATGAGAGTGAGTTGGAGCTGCATGGCTTGGTTGCTCAACTAAGGAAAGGGCTCAAAGAGGCGAGCAACTATTGTGCCGAAAGACTTAAAGGGAGTGATGGATCTCGGGTGATTATCGAATCTTTCAAAGAGTCAGATGATTTCATCAGTAGAGATGACATTATAAACTTTCATGTCTGCACAGGTTTGAGTGATTATAAGGTATTGTATGAGGTGAATTTTGGGTGGGGAAAGCCAATTTGGGTGAGTAACATTCCTAGTGGTTTAAACAGAAATGTAGCATCATTGGTGTGCACAAGAGAGGATGATGGAACAGAGGCTTGGGTGACTTTGAGTGAAGGAGACATGGCAACTTTTGAACAGAACCAGGAGCTTCTTGCATTTGCTGTGGTGAATCCAAGTGTCTTGGAACCCATTGCATTGAAGTCTGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

452

Amino Acids

49.61

Weight (kDa)

6.1

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 431 3.3e-80 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26040
fragaria_vesca FvH4_3g15920
malus_domestica MD05G1218200.v1.1 MD16G1109400.v1.1
rosa_chinensis RchiOBHm_Chr5g0026761
rosa_laevigata RLG00000032959
rosa_multiflora Rmu_sc0001493.1_g000016 Rmu_ssc0000172.1_g000028 Rmu_ssc0000172.1_g000030
rosa_roxburghii Rroxscaffold_1G00052730
rosa_rugosa Rorug05G0095400
rosa_samantha Rh5DG187500
rosa_wichuraiana Rw5G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1082, 1116
AarI CACCTGC 1 cut(s) 172
Acc36I ACCTGC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 683
AccB7I CCANNNNNTGG 1 cut(s) 838
AciI CCGC 2 cut(s) 380, 863
AclWI GGATC 3 cut(s) 168, 621, 1027
AcsI RAATTY 2 cut(s) 730, 1135
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 5 cut(s) 230, 386, 567, 580, 838
AgsI TTSAA 5 cut(s) 73, 556, 1045, 1277, 1342
AjnI CCWGG 1 cut(s) 1284
AjuI GAANNNNNNNTTGG 6 cut(s) 571, 603, 1141, 1173, 1222, 1254
AluBI AGCT 9 cut(s) 76, 293, 355, 740, 749, 792, 817, 937, 1291
AluI AGCT 9 cut(s) 76, 293, 355, 740, 749, 792, 817, 937, 1291
Alw21I GWGCWC 2 cut(s) 523, 1214
Alw26I GTCTC 2 cut(s) 810, 1254
Alw44I GTGCAC 1 cut(s) 1210
AlwI GGATC 3 cut(s) 168, 621, 1027
AlwNI CAGNNNCTG 1 cut(s) 773
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 2 cut(s) 304, 395
ApaLI GTGCAC 1 cut(s) 1210
ApeKI GCWGC 7 cut(s) 352, 479, 512, 701, 773, 908, 937
ApoI RAATTY 2 cut(s) 730, 1135
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 2 cut(s) 390, 395
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 6 cut(s) 485, 1039, 1144, 1174, 1255, 1321
AvaI CYCGRG 1 cut(s) 1023
AvaII GGWCC 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 1214
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 972
BauI CACGAG 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 523, 1214
BbvI GCAGC 7 cut(s) 364, 491, 499, 713, 760, 895, 924
BccI CCATC 4 cut(s) 46, 266, 1010, 1220
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 838, 872
BciT130I CCWGG 1 cut(s) 1286
BciVI GTATCC 1 cut(s) 893
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 810, 1254
BfaI CTAG 2 cut(s) 516, 1176
BfmI CTRYAG 1 cut(s) 882
BfoI RGCGCY 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 172
BfuI GTATCC 1 cut(s) 893
BisI GCNGC 8 cut(s) 353, 480, 513, 702, 774, 863, 909, 938
BlsI GCNGC 8 cut(s) 354, 481, 514, 703, 775, 864, 910, 939
Bme1390I CCNGG 2 cut(s) 394, 1286
Bme18I GGWCC 1 cut(s) 390
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 2 cut(s) 390, 395
BmiI GGNNCC 5 cut(s) 391, 572, 685, 890, 1329
BmrFI CCNGG 2 cut(s) 394, 1286
BmsI GCATC 5 cut(s) 325, 466, 658, 680, 1208
Bpu10I CCTNAGC 1 cut(s) 813
BpuEI CTTGAG 1 cut(s) 766
BpuMI CCSGG 1 cut(s) 394
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 301, 339
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 5 cut(s) 230, 386, 567, 580, 838
Bse1I ACTGG 1 cut(s) 705
Bse3DI GCAATG 1 cut(s) 1332
BseBI CCWGG 1 cut(s) 1286
BseDI CCNNGG 2 cut(s) 301, 339
BseGI GGATG 3 cut(s) 189, 880, 1228
BseLI CCNNNNNNNGG 5 cut(s) 230, 386, 567, 580, 838
BseMI GCAATG 1 cut(s) 1332
BseMII CTCAG 2 cut(s) 338, 479
BseNI ACTGG 1 cut(s) 705
BseRI GAGGAG 1 cut(s) 798
BseSI GKGCMC 1 cut(s) 1214
BseXI GCAGC 7 cut(s) 364, 491, 499, 713, 760, 895, 924
BsgI GTGCAG 4 cut(s) 782, 786, 894, 1081
BshFI GGCC 2 cut(s) 306, 397
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 523, 1214
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 2 cut(s) 362, 393
BslFI GGGAC 3 cut(s) 361, 403, 814
BslI CCNNNNNNNGG 5 cut(s) 230, 386, 567, 580, 838
BsmAI GTCTC 2 cut(s) 810, 1254
BsmFI GGGAC 3 cut(s) 361, 403, 814
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 2 cut(s) 306, 397
BsoBI CYCGRG 1 cut(s) 1023
Bsp1286I GDGCHC 3 cut(s) 523, 972, 1214
Bsp143I GATC 5 cut(s) 142, 173, 613, 785, 1019
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 2 cut(s) 380, 863
BspANI GGCC 2 cut(s) 306, 397
BspCNI CTCAG 2 cut(s) 339, 480
BspLI GGNNCC 5 cut(s) 391, 572, 685, 890, 1329
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 3 cut(s) 168, 621, 1027
BspT107I GGYRCC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 1332
BsrI ACTGG 1 cut(s) 705
BssECI CCNNGG 2 cut(s) 301, 339
BssMI GATC 5 cut(s) 142, 173, 613, 785, 1019
BssNI GRCGYC 1 cut(s) 684
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 1286
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 131, 623
BstACI GRCGYC 1 cut(s) 684
BstAPI GCANNNNNTGC 2 cut(s) 707, 773
BstC8I GCNNGC 2 cut(s) 384, 982
BstDEI CTNAG 4 cut(s) 347, 488, 813, 959
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 3 cut(s) 189, 880, 1228
BstH2I RGCGCY 1 cut(s) 687
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 5 cut(s) 145, 176, 616, 788, 1022
BstMAI GTCTC 2 cut(s) 810, 1254
BstMBI GATC 5 cut(s) 142, 173, 613, 785, 1019
BstMWI GCNNNNNNNGC 6 cut(s) 104, 518, 707, 746, 773, 914
BstNI CCWGG 1 cut(s) 1286
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 392, 1284
BstSFI CTRYAG 1 cut(s) 882
BstSLI GKGCMC 1 cut(s) 1214
BstV1I GCAGC 7 cut(s) 364, 491, 499, 713, 760, 895, 924
BstX2I RGATCY 2 cut(s) 173, 1019
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 2 cut(s) 173, 1019
BsuI GTATCC 1 cut(s) 893
BsuRI GGCC 2 cut(s) 306, 397
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 189, 880, 1228
BtsI GCAGTG 2 cut(s) 539, 774
BtsIMutI CAGTG 5 cut(s) 194, 344, 539, 712, 774
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 384, 982
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 1 cut(s) 686
Cfr13I GGNCC 2 cut(s) 390, 395
Csp6I GTAC 1 cut(s) 492
CviAII CATG 7 cut(s) 302, 457, 507, 536, 941, 1091, 1264
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 4 cut(s) 347, 488, 813, 959
DinI GGCGCC 1 cut(s) 685
DpnI GATC 5 cut(s) 144, 175, 615, 787, 1021
DpnII GATC 5 cut(s) 142, 173, 613, 785, 1019
DraI TTTAAA 1 cut(s) 1185
Eam1104I CTCTTC 2 cut(s) 131, 623
EarI CTCTTC 2 cut(s) 131, 623
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 1023
EcoRI GAATTC 1 cut(s) 730
EcoRII CCWGG 1 cut(s) 1284
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 972
EgeI GGCGCC 1 cut(s) 685
EheI GGCGCC 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 7 cut(s) 305, 460, 510, 539, 944, 1094, 1267
FaqI GGGAC 3 cut(s) 361, 403, 814
FatI CATG 7 cut(s) 301, 456, 506, 535, 940, 1090, 1263
FauI CCCGC 1 cut(s) 387
Fnu4HI GCNGC 8 cut(s) 353, 480, 513, 702, 774, 863, 909, 938
FokI GGATG 3 cut(s) 196, 887, 1235
FriOI GRGCYC 1 cut(s) 972
Fsp4HI GCNGC 8 cut(s) 353, 480, 513, 702, 774, 863, 909, 938
FspBI CTAG 2 cut(s) 516, 1176
GlaI GCGC 1 cut(s) 685
GluI GCNGC 8 cut(s) 353, 480, 513, 702, 774, 863, 909, 938
HaeII RGCGCY 1 cut(s) 687
HaeIII GGCC 2 cut(s) 306, 397
HapII CCGG 2 cut(s) 362, 393
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 7 cut(s) 305, 460, 510, 539, 944, 1094, 1267
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 2 cut(s) 74, 790
HinfI GANTC 6 cut(s) 237, 374, 878, 1037, 1049, 1312
HpaII CCGG 2 cut(s) 362, 393
HphI GGTGA 6 cut(s) 485, 1039, 1144, 1174, 1255, 1321
Hpy166II GTNNAC 2 cut(s) 280, 1212
Hpy188I TCNGA 6 cut(s) 20, 202, 693, 736, 874, 1054
Hpy188III TCNNGA 6 cut(s) 146, 181, 413, 548, 625, 783
Hpy8I GTNNAC 2 cut(s) 280, 1212
HpyAV CCTTC 4 cut(s) 317, 368, 698, 1250
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 518, 707, 746, 773, 914
HpyF3I CTNAG 4 cut(s) 347, 488, 813, 959
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 7 cut(s) 305, 460, 510, 539, 944, 1094, 1267
HspAI GCGC 1 cut(s) 684
KasI GGCGCC 1 cut(s) 683
Kzo9I GATC 5 cut(s) 142, 173, 613, 785, 1019
LmnI GCTCC 4 cut(s) 103, 360, 934, 1288
Lsp1109I GCAGC 7 cut(s) 364, 491, 499, 713, 760, 895, 924
LweI GCATC 5 cut(s) 325, 466, 658, 680, 1208
MaeI CTAG 2 cut(s) 516, 1176
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 8 cut(s) 146, 151, 192, 459, 646, 742, 1166, 1243
MalI GATC 5 cut(s) 144, 175, 615, 787, 1021
MboI GATC 5 cut(s) 142, 173, 613, 785, 1019
MboII GAAGA 5 cut(s) 33, 118, 199, 246, 640
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 2 cut(s) 173, 1019
MhlI GDGCHC 3 cut(s) 523, 972, 1214
MluCI AATT 5 cut(s) 444, 678, 730, 1135, 1155
Mly113I GGCGCC 1 cut(s) 684
MlyI GAGTC 3 cut(s) 383, 872, 1058
MmeI TCCRAC 3 cut(s) 71, 852, 912
Mph1103I ATGCAT 1 cut(s) 673
MseI TTAA 3 cut(s) 33, 1005, 1184
MslI CAYNNNNRTG 2 cut(s) 270, 1207
MspI CCGG 2 cut(s) 362, 393
MspR9I CCNGG 2 cut(s) 394, 1286
MssI GTTTAAAC 1 cut(s) 1185
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 1 cut(s) 1286
MwoI GCNNNNNNNGC 6 cut(s) 104, 518, 707, 746, 773, 914
NarI GGCGCC 1 cut(s) 684
NciI CCSGG 1 cut(s) 394
NcoI CCATGG 1 cut(s) 301
NdeII GATC 5 cut(s) 142, 173, 613, 785, 1019
NlaIII CATG 7 cut(s) 305, 460, 510, 539, 944, 1094, 1267
NlaIV GGNNCC 5 cut(s) 391, 572, 685, 890, 1329
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 6 cut(s) 146, 192, 459, 646, 742, 1243
NsiI ATGCAT 1 cut(s) 673
NspI RCATGY 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 3 cut(s) 237, 1037, 1312
PflMI CCANNNNNTGG 1 cut(s) 838
PkrI GCNGC 8 cut(s) 354, 481, 514, 703, 775, 864, 910, 939
PleI GAGTC 3 cut(s) 382, 872, 1057
PluTI GGCGCC 1 cut(s) 687
PmeI GTTTAAAC 1 cut(s) 1185
PpsI GAGTC 3 cut(s) 382, 872, 1057
PsiI TTATAA 2 cut(s) 1082, 1116
Psp6I CCWGG 1 cut(s) 1284
PspGI CCWGG 1 cut(s) 1284
PspN4I GGNNCC 5 cut(s) 391, 572, 685, 890, 1329
PspPI GGNCC 2 cut(s) 390, 395
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 2 cut(s) 173, 1019
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
RseI CAYNNNNRTG 2 cut(s) 270, 1207
SaqAI TTAA 3 cut(s) 33, 1005, 1184
SatI GCNGC 8 cut(s) 353, 480, 513, 702, 774, 863, 909, 938
Sau3AI GATC 5 cut(s) 142, 173, 613, 785, 1019
Sau96I GGNCC 2 cut(s) 390, 395
SchI GAGTC 3 cut(s) 383, 872, 1058
ScrFI CCNGG 2 cut(s) 394, 1286
SduI GDGCHC 3 cut(s) 523, 972, 1214
SfaNI GCATC 5 cut(s) 325, 466, 658, 680, 1208
SfcI CTRYAG 1 cut(s) 882
SfoI GGCGCC 1 cut(s) 685
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 2 cut(s) 270, 1207
SmlI CTYRAG 1 cut(s) 781
SmoI CTYRAG 1 cut(s) 781
Sse9I AATT 5 cut(s) 444, 678, 730, 1135, 1155
SsiI CCGC 2 cut(s) 380, 863
SspDI GGCGCC 1 cut(s) 683
SspMI CTAG 2 cut(s) 516, 1176
StyD4I CCNGG 2 cut(s) 392, 1284
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 258, 1035
TasI AATT 5 cut(s) 444, 678, 730, 1135, 1155
TatI WGTACW 1 cut(s) 491
TauI GCSGC 1 cut(s) 865
TfiI GAWTC 3 cut(s) 237, 1037, 1312
Tru1I TTAA 3 cut(s) 33, 1005, 1184
Tru9I TTAA 3 cut(s) 33, 1005, 1184
TscAI CASTG 5 cut(s) 201, 351, 546, 712, 774
TseFI GTSAC 6 cut(s) 146, 192, 459, 646, 742, 1243
TseI GCWGC 7 cut(s) 352, 479, 512, 701, 773, 908, 937
Tsp45I GTSAC 6 cut(s) 146, 192, 459, 646, 742, 1243
TspDTI ATGAA 5 cut(s) 17, 200, 650, 1051, 1079
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 5 cut(s) 201, 351, 546, 712, 774
Van91I CCANNNNNTGG 1 cut(s) 838
VneI GTGCAC 1 cut(s) 1210
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 2 cut(s) 730, 1135
XceI RCATGY 1 cut(s) 460
XspI CTAG 2 cut(s) 516, 1176
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.