Rmu_ssc0000172.1_g000028

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000172.1
OG0017041
Physical Location & Seq
Reverse (-)
123277 .. 124494
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000172.1_g000028.1.cds

Sequence Viewer

Length: 1218 bp
atgatcgtgacgttacattcacaccctgcaaagagatccctctggatgaagaagtcactgtccgaaactctgactcgtttctacccttttgctggaagaatcaaagaaaacatctcaatcgaatgcttcgatgatggtgttgactatgtggaagctcgtgtccatggccttctctccacccttttagcacaacctgatgccgaggcactgaggcagctccttccggtagagattgactccccgaaagcagggaccgggcctctgcttcttgttcaggagaacttttttgattgtggtggattggcaattggtgtgtgcatgtcacggaagttgggtgatgcagcctcgctgagcacattcattatgtcatgggctgctagtgcacttggatttagtcaagcagtgcttcccgatttcaacgcctcatttcggttcccaccaatggattgttcctctgcccacaactctgctgtggatcatatcatcgagaagagaacgaatggttgtgtcacaaagaggtttgtgttttatgcatcaaagattggcgcccttcagactaaagcagccagtgcaaatgtgaaacagcccacgcattcggaagctgtcacagctctcatttggagatgtgcagtggctgcagcctcaagatcaaccttactgcacaagtctcctcctaagctctctgtgttgtcccaatctgtggatattcgcaaaagggtcgtgccccctttgtcggatgactctatagggaaccttgtgggatactttgctgcacaggcaaatgagagtgagttggagctgccaggcttggttgctcaactaaggaaagggctcaaagaggcgagcaactattgtgccgaaagacttaaagggagtgatggatctcgggtgattatagaatctttcaaagagtcagatgatttcatccatagagatgacattatgaactttcatgtctgcacaggtttgagtgattataaggtattgtatgaggtgaattttgggtggggaaggccaatttgggtgagtaatattcctagtggtttaaacagaaatgtagcatcattggtgagcacaagagaggatgatggaacagaggcttgggtgactttgagtgagggagacatggcgacttttgaacagaaccaggagcttcttgcatttgctgtggtgaatccaagtgtcttggaacccattgcattgaagtctgctctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

405

Amino Acids

44.18

Weight (kDa)

6.02

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26040
fragaria_vesca FvH4_3g15920
malus_domestica MD05G1218200.v1.1 MD16G1109400.v1.1
rosa_chinensis RchiOBHm_Chr5g0026761
rosa_laevigata RLG00000032959
rosa_multiflora Rmu_sc0001493.1_g000016 Rmu_ssc0000172.1_g000028 Rmu_ssc0000172.1_g000030
rosa_roxburghii Rroxscaffold_1G00052730
rosa_rugosa Rorug05G0095400
rosa_samantha Rh5DG187500
rosa_wichuraiana Rw5G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 978
AccB1I GGYRCC 1 cut(s) 545
AccB7I CCANNNNNTGG 1 cut(s) 700
AclWI GGATC 3 cut(s) 30, 483, 889
AcsI RAATTY 1 cut(s) 997
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 546
AfiI CCNNNNNNNGG 6 cut(s) 92, 248, 429, 442, 700, 733
AgsI TTSAA 4 cut(s) 418, 907, 1139, 1204
AjnI CCWGG 2 cut(s) 802, 1146
AjuI GAANNNNNNNTTGG 6 cut(s) 433, 465, 1003, 1035, 1084, 1116
AluBI AGCT 7 cut(s) 155, 217, 602, 611, 679, 799, 1153
AluI AGCT 7 cut(s) 155, 217, 602, 611, 679, 799, 1153
Alw21I GWGCWC 3 cut(s) 356, 385, 1076
Alw26I GTCTC 2 cut(s) 672, 1116
Alw44I GTGCAC 1 cut(s) 381
AlwI GGATC 3 cut(s) 30, 483, 889
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 885
AoxI GGCC 3 cut(s) 166, 257, 1013
ApaLI GTGCAC 1 cut(s) 381
ApeKI GCWGC 8 cut(s) 214, 341, 374, 563, 635, 638, 770, 799
ApoI RAATTY 1 cut(s) 997
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 252, 257
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 7 cut(s) 347, 901, 1006, 1036, 1081, 1117, 1183
AvaI CYCGRG 1 cut(s) 885
AvaII GGWCC 1 cut(s) 252
BaeGI GKGCMC 2 cut(s) 385, 726
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 834
BauI CACGAG 1 cut(s) 156
Bbv12I GWGCWC 3 cut(s) 356, 385, 1076
BbvI GCAGC 8 cut(s) 226, 353, 361, 575, 622, 650, 757, 786
BccI CCATC 3 cut(s) 128, 872, 1082
BcgI CGANNNNNNTGC 2 cut(s) 700, 734
BciT130I CCWGG 2 cut(s) 804, 1148
BciVI GTATCC 1 cut(s) 755
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 672, 1116
BfaI CTAG 2 cut(s) 378, 1038
BfmI CTRYAG 2 cut(s) 636, 744
BfoI RGCGCY 1 cut(s) 549
BfuI GTATCC 1 cut(s) 755
BisI GCNGC 8 cut(s) 215, 342, 375, 564, 636, 639, 771, 800
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 8 cut(s) 216, 343, 376, 565, 637, 640, 772, 801
Bme1390I CCNGG 3 cut(s) 256, 804, 1148
Bme18I GGWCC 1 cut(s) 252
BmeT110I CYCGRG 1 cut(s) 885
BmgT120I GGNCC 2 cut(s) 252, 257
BmiI GGNNCC 5 cut(s) 253, 434, 547, 752, 1191
BmrFI CCNGG 3 cut(s) 256, 804, 1148
BmsI GCATC 4 cut(s) 187, 328, 542, 1070
BplI GAGNNNNNCTC 2 cut(s) 221, 253
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 628
BpuMI CCSGG 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 163, 201
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 248, 429, 442, 700, 733
Bse1I ACTGG 1 cut(s) 567
Bse3DI GCAATG 1 cut(s) 1194
BseBI CCWGG 2 cut(s) 804, 1148
BseDI CCNNGG 2 cut(s) 163, 201
BseGI GGATG 4 cut(s) 51, 742, 924, 1090
BseLI CCNNNNNNNGG 6 cut(s) 92, 248, 429, 442, 700, 733
BseMI GCAATG 1 cut(s) 1194
BseMII CTCAG 2 cut(s) 200, 341
BseNI ACTGG 1 cut(s) 567
BseRI GAGGAG 1 cut(s) 660
BseSI GKGCMC 2 cut(s) 385, 726
BseXI GCAGC 8 cut(s) 226, 353, 361, 575, 622, 650, 757, 786
BsgI GTGCAG 4 cut(s) 644, 648, 756, 943
BshFI GGCC 3 cut(s) 168, 259, 1015
BshNI GGYRCC 1 cut(s) 545
BsiHKAI GWGCWC 3 cut(s) 356, 385, 1076
BsiHKCI CYCGRG 1 cut(s) 885
BsiSI CCGG 2 cut(s) 224, 255
BslFI GGGAC 2 cut(s) 265, 676
BslI CCNNNNNNNGG 6 cut(s) 92, 248, 429, 442, 700, 733
BsmAI GTCTC 2 cut(s) 672, 1116
BsmFI GGGAC 2 cut(s) 265, 676
BsmI GAATGC 2 cut(s) 128, 592
BsnI GGCC 3 cut(s) 168, 259, 1015
BsoBI CYCGRG 1 cut(s) 885
Bsp1286I GDGCHC 5 cut(s) 356, 385, 726, 834, 1076
Bsp143I GATC 5 cut(s) 3, 35, 475, 647, 881
Bsp1720I GCTNAGC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 163
BspANI GGCC 3 cut(s) 168, 259, 1015
BspCNI CTCAG 2 cut(s) 201, 342
BspLI GGNNCC 5 cut(s) 253, 434, 547, 752, 1191
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 3 cut(s) 30, 483, 889
BspT107I GGYRCC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 1194
BsrI ACTGG 1 cut(s) 567
BssECI CCNNGG 2 cut(s) 163, 201
BssMI GATC 5 cut(s) 3, 35, 475, 647, 881
BssNI GRCGYC 1 cut(s) 546
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 804, 1148
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 485
BstACI GRCGYC 1 cut(s) 546
BstAPI GCANNNNNTGC 2 cut(s) 569, 635
BstC8I GCNNGC 1 cut(s) 844
BstDEI CTNAG 4 cut(s) 209, 350, 675, 821
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 4 cut(s) 51, 742, 924, 1090
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 5 cut(s) 6, 38, 478, 650, 884
BstMAI GTCTC 2 cut(s) 672, 1116
BstMBI GATC 5 cut(s) 3, 35, 475, 647, 881
BstMWI GCNNNNNNNGC 5 cut(s) 380, 569, 608, 635, 776
BstNI CCWGG 2 cut(s) 804, 1148
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 3 cut(s) 254, 802, 1146
BstSFI CTRYAG 2 cut(s) 636, 744
BstSLI GKGCMC 2 cut(s) 385, 726
BstV1I GCAGC 8 cut(s) 226, 353, 361, 575, 622, 650, 757, 786
BstX2I RGATCY 2 cut(s) 35, 881
BstYI RGATCY 2 cut(s) 35, 881
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 3 cut(s) 168, 259, 1015
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 4 cut(s) 51, 742, 924, 1090
BtsI GCAGTG 2 cut(s) 408, 636
BtsIMutI CAGTG 5 cut(s) 56, 206, 408, 574, 636
Cac8I GCNNGC 1 cut(s) 844
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 1 cut(s) 548
Cfr13I GGNCC 2 cut(s) 252, 257
CviAII CATG 5 cut(s) 164, 319, 369, 953, 1126
DdeI CTNAG 4 cut(s) 209, 350, 675, 821
DinI GGCGCC 1 cut(s) 547
DpnI GATC 5 cut(s) 5, 37, 477, 649, 883
DpnII GATC 5 cut(s) 3, 35, 475, 647, 881
DraI TTTAAA 1 cut(s) 1047
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 834
Eco47I GGWCC 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 885
EcoRII CCWGG 2 cut(s) 802, 1146
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 834
EgeI GGCGCC 1 cut(s) 547
EheI GGCGCC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 5 cut(s) 167, 322, 372, 956, 1129
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 2 cut(s) 265, 676
FatI CATG 5 cut(s) 163, 318, 368, 952, 1125
Fnu4HI GCNGC 8 cut(s) 215, 342, 375, 564, 636, 639, 771, 800
FokI GGATG 4 cut(s) 58, 749, 911, 1097
FriOI GRGCYC 1 cut(s) 834
Fsp4HI GCNGC 8 cut(s) 215, 342, 375, 564, 636, 639, 771, 800
FspBI CTAG 2 cut(s) 378, 1038
GlaI GCGC 1 cut(s) 547
GluI GCNGC 8 cut(s) 215, 342, 375, 564, 636, 639, 771, 800
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 3 cut(s) 168, 259, 1015
HapII CCGG 2 cut(s) 224, 255
HhaI GCGC 1 cut(s) 548
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 5 cut(s) 167, 322, 372, 956, 1129
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 7 cut(s) 73, 99, 236, 740, 899, 911, 1174
HpaII CCGG 2 cut(s) 224, 255
HphI GGTGA 7 cut(s) 347, 901, 1006, 1036, 1081, 1117, 1183
Hpy166II GTNNAC 2 cut(s) 142, 383
Hpy188I TCNGA 6 cut(s) 64, 72, 555, 598, 736, 916
Hpy188III TCNNGA 6 cut(s) 7, 43, 275, 410, 487, 645
Hpy8I GTNNAC 2 cut(s) 142, 383
HpyAV CCTTC 4 cut(s) 179, 230, 560, 1005
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 569, 608, 635, 776
HpyF3I CTNAG 4 cut(s) 209, 350, 675, 821
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 5 cut(s) 167, 322, 372, 956, 1129
HspAI GCGC 1 cut(s) 546
KasI GGCGCC 1 cut(s) 545
Kzo9I GATC 5 cut(s) 3, 35, 475, 647, 881
LmnI GCTCC 3 cut(s) 222, 796, 1150
Lsp1109I GCAGC 8 cut(s) 226, 353, 361, 575, 622, 650, 757, 786
LweI GCATC 4 cut(s) 187, 328, 542, 1070
MaeI CTAG 2 cut(s) 378, 1038
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 7 cut(s) 7, 12, 54, 321, 508, 604, 1105
MalI GATC 5 cut(s) 5, 37, 477, 649, 883
MboI GATC 5 cut(s) 3, 35, 475, 647, 881
MboII GAAGA 3 cut(s) 61, 108, 502
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 2 cut(s) 35, 881
MhlI GDGCHC 5 cut(s) 356, 385, 726, 834, 1076
MluCI AATT 3 cut(s) 306, 997, 1017
Mly113I GGCGCC 1 cut(s) 546
MlyI GAGTC 4 cut(s) 67, 230, 734, 920
MmeI TCCRAC 2 cut(s) 714, 774
Mph1103I ATGCAT 1 cut(s) 535
MseI TTAA 2 cut(s) 867, 1046
MslI CAYNNNNRTG 1 cut(s) 933
MspI CCGG 2 cut(s) 224, 255
MspR9I CCNGG 3 cut(s) 256, 804, 1148
MssI GTTTAAAC 1 cut(s) 1047
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 2 cut(s) 128, 592
MvaI CCWGG 2 cut(s) 804, 1148
MwoI GCNNNNNNNGC 5 cut(s) 380, 569, 608, 635, 776
NarI GGCGCC 1 cut(s) 546
NciI CCSGG 1 cut(s) 256
NcoI CCATGG 1 cut(s) 163
NdeII GATC 5 cut(s) 3, 35, 475, 647, 881
NlaIII CATG 5 cut(s) 167, 322, 372, 956, 1129
NlaIV GGNNCC 5 cut(s) 253, 434, 547, 752, 1191
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 6 cut(s) 7, 54, 321, 508, 604, 1105
NsiI ATGCAT 1 cut(s) 535
NspI RCATGY 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 2 cut(s) 128, 592
PfeI GAWTC 3 cut(s) 99, 899, 1174
PflMI CCANNNNNTGG 1 cut(s) 700
PkrI GCNGC 8 cut(s) 216, 343, 376, 565, 637, 640, 772, 801
PleI GAGTC 4 cut(s) 67, 230, 734, 919
PluTI GGCGCC 1 cut(s) 549
PmeI GTTTAAAC 1 cut(s) 1047
PpsI GAGTC 4 cut(s) 67, 230, 734, 919
PsiI TTATAA 1 cut(s) 978
Psp6I CCWGG 2 cut(s) 802, 1146
PspGI CCWGG 2 cut(s) 802, 1146
PspN4I GGNNCC 5 cut(s) 253, 434, 547, 752, 1191
PspPI GGNCC 2 cut(s) 252, 257
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 35, 881
RseI CAYNNNNRTG 1 cut(s) 933
SaqAI TTAA 2 cut(s) 867, 1046
SatI GCNGC 8 cut(s) 215, 342, 375, 564, 636, 639, 771, 800
Sau3AI GATC 5 cut(s) 3, 35, 475, 647, 881
Sau96I GGNCC 2 cut(s) 252, 257
SchI GAGTC 4 cut(s) 67, 230, 734, 920
ScrFI CCNGG 3 cut(s) 256, 804, 1148
SduI GDGCHC 5 cut(s) 356, 385, 726, 834, 1076
SfaNI GCATC 4 cut(s) 187, 328, 542, 1070
SfcI CTRYAG 2 cut(s) 636, 744
SfoI GGCGCC 1 cut(s) 547
SinI GGWCC 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 933
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 3 cut(s) 306, 997, 1017
SspDI GGCGCC 1 cut(s) 545
SspI AATATT 1 cut(s) 1033
SspMI CTAG 2 cut(s) 378, 1038
StyD4I CCNGG 3 cut(s) 254, 802, 1146
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 1 cut(s) 14
TaqI TCGA 3 cut(s) 120, 129, 486
TasI AATT 3 cut(s) 306, 997, 1017
TfiI GAWTC 3 cut(s) 99, 899, 1174
Tru1I TTAA 2 cut(s) 867, 1046
Tru9I TTAA 2 cut(s) 867, 1046
TscAI CASTG 5 cut(s) 63, 213, 408, 574, 636
TseFI GTSAC 6 cut(s) 7, 54, 321, 508, 604, 1105
TseI GCWGC 8 cut(s) 214, 341, 374, 563, 635, 638, 770, 799
Tsp45I GTSAC 6 cut(s) 7, 54, 321, 508, 604, 1105
TspDTI ATGAA 5 cut(s) 62, 349, 913, 941, 959
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 5 cut(s) 63, 213, 408, 574, 636
Van91I CCANNNNNTGG 1 cut(s) 700
VneI GTGCAC 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 252
XapI RAATTY 1 cut(s) 997
XceI RCATGY 1 cut(s) 322
XspI CTAG 2 cut(s) 378, 1038
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.