MD16G1109400.v1.1

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0017041
Physical Location & Seq
Reverse (-)
7673350 .. 7674678
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1109400.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGCTCAAGTGATGAACATTGAGATCACCAAGAAGGAAATCATAAAACCATCCTCTCCAACTCCCCACTACCTCAAAAGGTTCAAGCTTTCTCTTTTGGATCAGCTTGCTCCAGTAGCCTATGGTCCTCTGGTTCTTTTCTACCCCAACAATGTCAATGGGGTTGCGACGGAGGAAAGATCTCAGCAGCTGAAGAAATCACTCTCGGAAACCTTAACCTGCTTCTACCCTCTTGCCGGAAGAATCAAAGATAACATCTTTATTGATTGCAATGATGAGGGGGCTATTTACGTTGAAGCTCAAGTCAACTCCCTTCTCTCAACCTTCCTTCATCAACCCGATTTTGATTTTCTAAAATTGTTCCTTCCCATTGAGGTTGGATCCTCTGAAGCAGCAACTGGGCCTCTTTTACTTGTTAAAGCCAGTTTCTTTGAGTGTGGTGGATTGGCCATAGGCGTGTGCTTCTCACACAAGCTTGCTGATGCATCAACTCTTGGCCTTTTCGTCAAAGCTTGGGCTGCCACATCTCTTGGTATTGGTGACACTGTGGTACCGGACTTCAGCAGTGCAGCAATCCGATTCCCGCCTAGAGATTTCTCGGTGCAGAGGCCTGCCGTGGAGATGAAGATAGGAAAGTGTGTGACAAGGAGATTTGTTATTGATGGACCAAAGATGAGGGATCTTAAAGCTAAAGTCACTAGTGGAAGTGTTGAGAAACCGACAAGAGTTGAAGCTGTTACTAGCCTCATATGGAGTTGTGCAATGAATGCATCAAAATTAAGTTCAGGGGCTTCAAATGTGTCAATGGTGTCACAATCGGTGAACATACGCAAACGGATTGTGCCACCATTGCTGCAAACCTCAGTTGGGAATCTTGTGGGGTACTACGCTGTAAGGACGGACGAGAGTGGGATAGAGTTGAAGGAATTGGTTTCCCAAATGAGGAAGGCAATGATCGAGTTTAATGAAAACCATCCCAAGAGATTGAAAGGGGAAAACATGTTCGAAGTCATTTGCGAGTATTTTAAAGAGATTGGAAGCATTATGAGAAGAGATGACATAAACTTCTTCATCTGCACAAGTGTATGCAACTTTGGAATATATGAGATTGATTTCGGGTGGGGGAAGCCAATTTGGGCGACCATCCCTGGTGGTACACTCAAGAATGTTGCTACTTTGATGGACACCATAGAGCGTGATGGAGTAGATGCATGGATAAGTTTAAGTGAGGAAGACATGGCCATATTCGAACGTGACCCGGAACTTCTTGCATTTGCTTCTGTAAATCCAAGTGTATTTGAACCTGTAACAAGGAGCTCTTCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

443

Amino Acids

48.83

Weight (kDa)

5.98

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 422 5.6e-88 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26040
fragaria_vesca FvH4_3g15920
malus_domestica MD05G1218200.v1.1 MD16G1109400.v1.1
rosa_chinensis RchiOBHm_Chr5g0026761
rosa_laevigata RLG00000032959
rosa_multiflora Rmu_sc0001493.1_g000016 Rmu_ssc0000172.1_g000028 Rmu_ssc0000172.1_g000030
rosa_roxburghii Rroxscaffold_1G00052730
rosa_rugosa Rorug05G0095400
rosa_samantha Rh5DG187500
rosa_wichuraiana Rw5G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 227
Acc65I GGTACC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 550
AciI CCGC 1 cut(s) 584
AclWI GGATC 4 cut(s) 108, 375, 388, 687
AcoI YGGCCR 2 cut(s) 447, 1239
AcuI CTGAAG 3 cut(s) 212, 408, 544
AfaI GTAC 3 cut(s) 552, 884, 1156
AfiI CCNNNNNNNGG 3 cut(s) 236, 867, 942
AflIII ACRYGT 1 cut(s) 999
AgsI TTSAA 7 cut(s) 85, 296, 731, 795, 922, 988, 1301
AhlI ACTAGT 1 cut(s) 698
AjnI CCWGG 1 cut(s) 1147
AloI GAACNNNNNNTCC 2 cut(s) 986, 1018
AluBI AGCT 9 cut(s) 88, 106, 190, 299, 475, 512, 689, 734, 1317
AluI AGCT 9 cut(s) 88, 106, 190, 299, 475, 512, 689, 734, 1317
Alw21I GWGCWC 1 cut(s) 1319
AlwI GGATC 4 cut(s) 108, 375, 388, 687
AlwNI CAGNNNCTG 2 cut(s) 190, 398
AoxI GGCC 5 cut(s) 401, 447, 496, 608, 1239
ApeKI GCWGC 5 cut(s) 187, 392, 518, 569, 853
Asp718I GGTACC 1 cut(s) 550
AspS9I GGNCC 3 cut(s) 125, 401, 665
AsuC2I CCSGG 1 cut(s) 1259
AsuHPI GGTGA 3 cut(s) 19, 551, 832
AsuII TTCGAA 2 cut(s) 1005, 1248
AvaII GGWCC 2 cut(s) 125, 665
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BalI TGGCCA 2 cut(s) 449, 1241
BamHI GGATCC 1 cut(s) 380
BanI GGYRCC 1 cut(s) 550
BanII GRGCYC 1 cut(s) 1319
BbsI GAAGAC 1 cut(s) 1239
Bbv12I GWGCWC 1 cut(s) 1319
BbvI GCAGC 5 cut(s) 199, 404, 505, 581, 840
BccI CCATC 6 cut(s) 58, 656, 981, 1151, 1174, 1193
BceAI ACGGC 1 cut(s) 599
BciT130I CCWGG 1 cut(s) 1149
BcnI CCSGG 1 cut(s) 1259
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 3 cut(s) 588, 699, 741
BfuAI ACCTGC 1 cut(s) 227
BglII AGATCT 1 cut(s) 179
BisI GCNGC 5 cut(s) 188, 393, 519, 570, 854
BlsI GCNGC 5 cut(s) 189, 394, 520, 571, 855
Bme1390I CCNGG 2 cut(s) 1149, 1259
Bme18I GGWCC 2 cut(s) 125, 665
BmgT120I GGNCC 3 cut(s) 125, 401, 665
BmiI GGNNCC 2 cut(s) 382, 552
BmrFI CCNGG 2 cut(s) 1149, 1259
BmrI ACTGGG 1 cut(s) 408
BmsI GCATC 4 cut(s) 472, 494, 779, 1198
BmuI ACTGGG 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 1239
BplI GAGNNNNNCTC 1 cut(s) 1306
BpmI CTGGAG 1 cut(s) 96
Bpu14I TTCGAA 2 cut(s) 1005, 1248
BpuEI CTTGAG 2 cut(s) 285, 1145
BpuMI CCSGG 1 cut(s) 1259
BsaJI CCNNGG 2 cut(s) 615, 1147
BsaWI WCCGGW 1 cut(s) 553
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 867, 942
Bse1I ACTGG 3 cut(s) 113, 403, 423
Bse3DI GCAATG 4 cut(s) 277, 768, 848, 957
BseBI CCWGG 1 cut(s) 1149
BseDI CCNNGG 2 cut(s) 615, 1147
BseGI GGATG 3 cut(s) 50, 973, 1143
BseLI CCNNNNNNNGG 3 cut(s) 236, 867, 942
BseMI GCAATG 4 cut(s) 277, 768, 848, 957
BseMII CTCAG 2 cut(s) 197, 876
BseNI ACTGG 3 cut(s) 113, 403, 423
BseXI GCAGC 5 cut(s) 199, 404, 505, 581, 840
BsgI GTGCAG 3 cut(s) 588, 623, 1060
BshFI GGCC 5 cut(s) 403, 449, 498, 610, 1241
BshNI GGYRCC 1 cut(s) 550
BsiHKAI GWGCWC 1 cut(s) 1319
BsiSI CCGG 3 cut(s) 237, 554, 1259
BslI CCNNNNNNNGG 3 cut(s) 236, 867, 942
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 5 cut(s) 403, 449, 498, 610, 1241
Bsp119I TTCGAA 2 cut(s) 1005, 1248
Bsp1286I GDGCHC 1 cut(s) 1319
Bsp143I GATC 6 cut(s) 24, 100, 179, 380, 679, 954
BspACI CCGC 1 cut(s) 584
BspANI GGCC 5 cut(s) 403, 449, 498, 610, 1241
BspCNI CTCAG 2 cut(s) 196, 875
BspLI GGNNCC 2 cut(s) 382, 552
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 4 cut(s) 108, 375, 388, 687
BspQI GCTCTTC 1 cut(s) 1324
BspT104I TTCGAA 2 cut(s) 1005, 1248
BspT107I GGYRCC 1 cut(s) 550
BsrDI GCAATG 4 cut(s) 277, 768, 848, 957
BsrI ACTGG 3 cut(s) 113, 403, 423
BssECI CCNNGG 2 cut(s) 615, 1147
BssMI GATC 6 cut(s) 24, 100, 179, 380, 679, 954
Bst2UI CCWGG 1 cut(s) 1149
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 2 cut(s) 1045, 1324
BstAPI GCANNNNNTGC 1 cut(s) 767
BstBI TTCGAA 2 cut(s) 1005, 1248
BstC8I GCNNGC 3 cut(s) 108, 477, 612
BstDEI CTNAG 2 cut(s) 183, 862
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 3 cut(s) 50, 973, 1143
BstKTI GATC 6 cut(s) 27, 103, 182, 383, 682, 957
BstMBI GATC 6 cut(s) 24, 100, 179, 380, 679, 954
BstMWI GCNNNNNNNGC 4 cut(s) 116, 518, 767, 850
BstNI CCWGG 1 cut(s) 1149
BstNSI RCATGY 1 cut(s) 1003
BstSCI CCNGG 2 cut(s) 1147, 1257
BstV1I GCAGC 5 cut(s) 199, 404, 505, 581, 840
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 3 cut(s) 179, 380, 679
BstYI RGATCY 3 cut(s) 179, 380, 679
BsuRI GGCC 5 cut(s) 403, 449, 498, 610, 1241
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 3 cut(s) 50, 973, 1143
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 2 cut(s) 543, 571
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 108, 477, 612
CaiI CAGNNNCTG 2 cut(s) 190, 398
Cfr13I GGNCC 3 cut(s) 125, 401, 665
Csp6I GTAC 3 cut(s) 551, 883, 1155
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 3 cut(s) 1000, 1212, 1237
CviQI GTAC 3 cut(s) 551, 883, 1155
DdeI CTNAG 2 cut(s) 183, 862
DpnI GATC 6 cut(s) 26, 102, 181, 382, 681, 956
DpnII GATC 6 cut(s) 24, 100, 179, 380, 679, 954
DraI TTTAAA 1 cut(s) 1027
EaeI YGGCCR 2 cut(s) 447, 1239
Eam1104I CTCTTC 2 cut(s) 1045, 1324
EarI CTCTTC 2 cut(s) 1045, 1324
Ecl136II GAGCTC 1 cut(s) 1317
Eco147I AGGCCT 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 1319
Eco47I GGWCC 2 cut(s) 125, 665
Eco53kI GAGCTC 1 cut(s) 1317
Eco57I CTGAAG 3 cut(s) 212, 408, 544
EcoICRI GAGCTC 1 cut(s) 1317
EcoRII CCWGG 1 cut(s) 1147
EcoT22I ATGCAT 3 cut(s) 487, 772, 1213
EcoT38I GRGCYC 1 cut(s) 1319
FaeI CATG 3 cut(s) 1003, 1215, 1240
FalI AAGNNNNNCTT 1 cut(s) 1303
FatI CATG 3 cut(s) 999, 1211, 1236
FauI CCCGC 1 cut(s) 591
FauNDI CATATG 1 cut(s) 749
Fnu4HI GCNGC 5 cut(s) 188, 393, 519, 570, 854
FokI GGATG 3 cut(s) 37, 960, 1130
FriOI GRGCYC 1 cut(s) 1319
Fsp4HI GCNGC 5 cut(s) 188, 393, 519, 570, 854
FspBI CTAG 3 cut(s) 588, 699, 741
GluI GCNGC 5 cut(s) 188, 393, 519, 570, 854
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 5 cut(s) 403, 449, 498, 610, 1241
HapII CCGG 3 cut(s) 237, 554, 1259
Hin1II CATG 3 cut(s) 1003, 1215, 1240
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 3 cut(s) 86, 473, 510
HinfI GANTC 3 cut(s) 243, 579, 871
HpaII CCGG 3 cut(s) 237, 554, 1259
HphI GGTGA 3 cut(s) 19, 551, 832
Hpy166II GTNNAC 3 cut(s) 307, 823, 1157
Hpy188I TCNGA 3 cut(s) 208, 388, 578
Hpy188III TCNNGA 1 cut(s) 1162
Hpy8I GTNNAC 3 cut(s) 307, 823, 1157
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 7 cut(s) 28, 323, 334, 338, 374, 916, 940
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 2 cut(s) 291, 1252
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 518, 767, 850
HpyF3I CTNAG 2 cut(s) 183, 862
HpySE526I ACGT 2 cut(s) 291, 1252
Hsp92II CATG 3 cut(s) 1003, 1215, 1240
KpnI GGTACC 1 cut(s) 554
Kzo9I GATC 6 cut(s) 24, 100, 179, 380, 679, 954
LguI GCTCTTC 1 cut(s) 1324
LmnI GCTCC 2 cut(s) 115, 1314
Lsp1109I GCAGC 5 cut(s) 199, 404, 505, 581, 840
LweI GCATC 4 cut(s) 472, 494, 779, 1198
MaeI CTAG 3 cut(s) 588, 699, 741
MaeII ACGT 2 cut(s) 291, 1252
MaeIII GTNAC 7 cut(s) 539, 640, 694, 736, 810, 1253, 1306
MalI GATC 6 cut(s) 26, 102, 181, 382, 681, 956
MboI GATC 6 cut(s) 24, 100, 179, 380, 679, 954
MboII GAAGA 7 cut(s) 205, 252, 637, 1060, 1062, 1244, 1311
MflI RGATCY 3 cut(s) 179, 380, 679
MhlI GDGCHC 1 cut(s) 1319
MlsI TGGCCA 2 cut(s) 449, 1241
MluCI AATT 4 cut(s) 356, 776, 926, 1131
MluNI TGGCCA 2 cut(s) 449, 1241
MmeI TCCRAC 2 cut(s) 83, 358
Mox20I TGGCCA 2 cut(s) 449, 1241
Mph1103I ATGCAT 3 cut(s) 487, 772, 1213
MscI TGGCCA 2 cut(s) 449, 1241
MseI TTAA 8 cut(s) 215, 417, 684, 779, 963, 1026, 1223, 1327
MslI CAYNNNNRTG 1 cut(s) 455
Msp20I TGGCCA 2 cut(s) 449, 1241
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 3 cut(s) 237, 554, 1259
MspR9I CCNGG 2 cut(s) 1149, 1259
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 1 cut(s) 1149
MwoI GCNNNNNNNGC 4 cut(s) 116, 518, 767, 850
NciI CCSGG 1 cut(s) 1259
NdeI CATATG 1 cut(s) 749
NdeII GATC 6 cut(s) 24, 100, 179, 380, 679, 954
NlaIII CATG 3 cut(s) 1003, 1215, 1240
NlaIV GGNNCC 2 cut(s) 382, 552
NmuCI GTSAC 5 cut(s) 539, 640, 694, 810, 1253
NsiI ATGCAT 3 cut(s) 487, 772, 1213
NspI RCATGY 1 cut(s) 1003
NspV TTCGAA 2 cut(s) 1005, 1248
PceI AGGCCT 1 cut(s) 610
PciI ACATGT 1 cut(s) 999
PciSI GCTCTTC 1 cut(s) 1324
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 3 cut(s) 243, 579, 871
PkrI GCNGC 5 cut(s) 189, 394, 520, 571, 855
PscI ACATGT 1 cut(s) 999
Psp124BI GAGCTC 1 cut(s) 1319
Psp6I CCWGG 1 cut(s) 1147
PspGI CCWGG 1 cut(s) 1147
PspN4I GGNNCC 2 cut(s) 382, 552
PspPI GGNCC 3 cut(s) 125, 401, 665
PstNI CAGNNNCTG 2 cut(s) 190, 398
PsuI RGATCY 3 cut(s) 179, 380, 679
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 3 cut(s) 552, 884, 1156
RsaNI GTAC 3 cut(s) 551, 883, 1155
RseI CAYNNNNRTG 1 cut(s) 455
SacI GAGCTC 1 cut(s) 1319
SapI GCTCTTC 1 cut(s) 1324
SaqAI TTAA 8 cut(s) 215, 417, 684, 779, 963, 1026, 1223, 1327
SatI GCNGC 5 cut(s) 188, 393, 519, 570, 854
Sau3AI GATC 6 cut(s) 24, 100, 179, 380, 679, 954
Sau96I GGNCC 3 cut(s) 125, 401, 665
ScrFI CCNGG 2 cut(s) 1149, 1259
SduI GDGCHC 1 cut(s) 1319
SfaNI GCATC 4 cut(s) 472, 494, 779, 1198
SfuI TTCGAA 2 cut(s) 1005, 1248
SinI GGWCC 2 cut(s) 125, 665
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 3 cut(s) 6, 300, 1160
SmoI CTYRAG 3 cut(s) 6, 300, 1160
SpeI ACTAGT 1 cut(s) 698
Sse9I AATT 4 cut(s) 356, 776, 926, 1131
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 1 cut(s) 584
SspMI CTAG 3 cut(s) 588, 699, 741
SstI GAGCTC 1 cut(s) 1319
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 2 cut(s) 1147, 1257
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 2 cut(s) 294, 1255
TaqI TCGA 3 cut(s) 957, 1005, 1248
TasI AATT 4 cut(s) 356, 776, 926, 1131
TfiI GAWTC 3 cut(s) 243, 579, 871
Tru1I TTAA 8 cut(s) 215, 417, 684, 779, 963, 1026, 1223, 1327
Tru9I TTAA 8 cut(s) 215, 417, 684, 779, 963, 1026, 1223, 1327
TscAI CASTG 2 cut(s) 550, 571
TseFI GTSAC 5 cut(s) 539, 640, 694, 810, 1253
TseI GCWGC 5 cut(s) 187, 392, 518, 569, 853
Tsp45I GTSAC 5 cut(s) 539, 640, 694, 810, 1253
TspDTI ATGAA 6 cut(s) 29, 320, 638, 779, 981, 1060
TspGWI ACGGA 3 cut(s) 185, 850, 914
TspRI CASTG 2 cut(s) 550, 571
VpaK11BI GGWCC 2 cut(s) 125, 665
XceI RCATGY 1 cut(s) 1003
XspI CTAG 3 cut(s) 588, 699, 741
Zsp2I ATGCAT 3 cut(s) 487, 772, 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.