Rw5G017120

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017041
Physical Location & Seq
Forward (+)
21872951 .. 21874305
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017120.1

Sequence Viewer

Length: 1311 bp
ATGAAGTTTGAGGTAATCAGAAGTGAAACCATTAAGCCATCTTCTCCAACCCCCCATTATCTCAAACACTTCAAGCTTTCCCTTTTAGACCAACTTGCTCCTGTTGCTTATGAGCCCTTGGTTCTCTTCTACCTCTACAATGATCGTGACGTTACATTCACACCTGCAAAGGGATCCCTCTGGATGAAGAAGTCACTGTCCGAAACTCTGACTCGTTTCTACCCTTTTGCTGGAAGAATAAAAGAAAACATCTCAATCGAATGCTTCGATGATGGTGTTGACTATGTGGAAGCTCGTGTCCATGGCCTTCTCTCCACCCTTTTAGCACAACCTGATGCCGAGGCACTGAGGCAGCTCCTTCCGGTAGAGATTGAGTCCCCGAAAGCAGGGACCGGGCCTCTGCTTCTTGTTCAGGAGAACTTTTTTGATTGTGGTGGATTGGCAATTGGTGTGTGCATGTCACGTAAATTGGGTGATGCAGCCTCACTGAGCACATTCATTATGTCATGGGCTGCTAGTGCTCTTGGATTTAGTCAAGCACTGCTTCCCGATTTCAACGCCTCATTTCGGTTCCCACCAATGGATTGTTCCTCTGCCCACAACTCTGCTAGGTTTGTGTTTTATGCATCAAAGATTGGCGCCCTTCAGACTAAAGCAGCCAGTGCAAATGTGAAACAGCCCACGCATTCGGAAGCTGTCACAGCTCTCATTTGGAGATGTGCAGTGGCTGCAGCCTCAAGATCAAGCTTACTGCACAAGTCTCCTCCTAAGCTCTCTGTGTTGTCCCAATCTGTGGATATTCGCAAAAGGGTCGTGCCCCCTTTGTCGGATGACTCTATAGGGAACCTTGTGGGATACTTTGCTGCACAGGCAAATGAGAGTGAGTTGGAGCTGCCAGGCTTGGTTTCTCAACTAAGGAAAGGGCTCAAAGAGGCGAGCAACTATTGTGCCGAAAGACTTAAAGGGAGTGATGGATCTCGGGTGATTATCAAATCTTTCAAAGAGTCAGATGATTTCATCCATAGAGATGACATTATGAACTTTCATGTCTGCACAGGTTTGAGTGATTATAAGGTATTGTATGAGGTGAATTTTGGGTGGGGAAGGCCAATTTGGGTGAGTAATATTCCTAGTGGTTTAAACAGAAATGTAGCATCATTGGTGAGCACAAGACAGGATGATGGAACAGAGGCTTGGGTGACTTTGAGTGAGGGAGACATGGCAACTTTTGAACAGAACCAGGAGCTTCTTGCATTTGCTGTGGTGAATCCAAGTGTCTTGGAACCCATTGCATTGAAGTCTGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

436

Amino Acids

47.85

Weight (kDa)

6.11

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 177 1.1e-41 Transferase family
Transferase PF02458 197 - 416 8.1e-35 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26040
fragaria_vesca FvH4_3g15920
malus_domestica MD05G1218200.v1.1 MD16G1109400.v1.1
rosa_chinensis RchiOBHm_Chr5g0026761
rosa_laevigata RLG00000032959
rosa_multiflora Rmu_sc0001493.1_g000016 Rmu_ssc0000172.1_g000028 Rmu_ssc0000172.1_g000030
rosa_roxburghii Rroxscaffold_1G00052730
rosa_rugosa Rorug05G0095400
rosa_samantha Rh5DG187500
rosa_wichuraiana Rw5G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1071
AarI CACCTGC 1 cut(s) 172
Acc36I ACCTGC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 638
AccB7I CCANNNNNTGG 1 cut(s) 793
AclWI GGATC 3 cut(s) 168, 181, 982
AcsI RAATTY 1 cut(s) 1090
AcuI CTGAAG 1 cut(s) 629
AcyI GRCGYC 1 cut(s) 639
AfiI CCNNNNNNNGG 7 cut(s) 170, 230, 386, 567, 580, 793, 826
AgsI TTSAA 5 cut(s) 73, 556, 1000, 1232, 1297
AjnI CCWGG 2 cut(s) 895, 1239
AjuI GAANNNNNNNTTGG 6 cut(s) 571, 603, 1096, 1128, 1177, 1209
AluBI AGCT 9 cut(s) 76, 293, 355, 695, 704, 747, 772, 892, 1246
AluI AGCT 9 cut(s) 76, 293, 355, 695, 704, 747, 772, 892, 1246
Alw21I GWGCWC 3 cut(s) 494, 523, 1169
Alw26I GTCTC 2 cut(s) 765, 1209
AlwI GGATC 3 cut(s) 168, 181, 982
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 978
AoxI GGCC 3 cut(s) 304, 395, 1106
ApeKI GCWGC 8 cut(s) 352, 479, 512, 656, 728, 731, 863, 892
ApoI RAATTY 1 cut(s) 1090
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 2 cut(s) 390, 395
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 7 cut(s) 485, 994, 1099, 1129, 1174, 1210, 1276
AvaI CYCGRG 1 cut(s) 978
AvaII GGWCC 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 819
BamHI GGATCC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 638
BanII GRGCYC 2 cut(s) 117, 927
BauI CACGAG 1 cut(s) 294
Bbv12I GWGCWC 3 cut(s) 494, 523, 1169
BbvI GCAGC 8 cut(s) 364, 491, 499, 668, 715, 743, 850, 879
BccI CCATC 4 cut(s) 46, 266, 965, 1175
BcgI CGANNNNNNTGC 2 cut(s) 793, 827
BciT130I CCWGG 2 cut(s) 897, 1241
BciVI GTATCC 1 cut(s) 848
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 765, 1209
BfaI CTAG 3 cut(s) 516, 609, 1131
BfmI CTRYAG 2 cut(s) 729, 837
BfoI RGCGCY 1 cut(s) 642
BfuAI ACCTGC 1 cut(s) 172
BfuI GTATCC 1 cut(s) 848
BisI GCNGC 8 cut(s) 353, 480, 513, 657, 729, 732, 864, 893
BlsI GCNGC 8 cut(s) 354, 481, 514, 658, 730, 733, 865, 894
Bme1390I CCNGG 3 cut(s) 394, 897, 1241
Bme18I GGWCC 1 cut(s) 390
BmeT110I CYCGRG 1 cut(s) 978
BmgT120I GGNCC 2 cut(s) 390, 395
BmiI GGNNCC 6 cut(s) 175, 391, 572, 640, 845, 1284
BmrFI CCNGG 3 cut(s) 394, 897, 1241
BmsI GCATC 4 cut(s) 325, 466, 635, 1163
Bpu10I CCTNAGC 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 721
BpuMI CCSGG 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 3 cut(s) 117, 301, 339
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 7 cut(s) 170, 230, 386, 567, 580, 793, 826
Bse1I ACTGG 1 cut(s) 660
Bse3DI GCAATG 1 cut(s) 1287
BseBI CCWGG 2 cut(s) 897, 1241
BseDI CCNNGG 3 cut(s) 117, 301, 339
BseGI GGATG 4 cut(s) 189, 835, 1017, 1183
BseLI CCNNNNNNNGG 7 cut(s) 170, 230, 386, 567, 580, 793, 826
BseMI GCAATG 1 cut(s) 1287
BseMII CTCAG 2 cut(s) 338, 479
BseNI ACTGG 1 cut(s) 660
BseRI GAGGAG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 8 cut(s) 364, 491, 499, 668, 715, 743, 850, 879
BsgI GTGCAG 4 cut(s) 737, 741, 849, 1036
BshFI GGCC 3 cut(s) 306, 397, 1108
BshNI GGYRCC 1 cut(s) 638
BsiHKAI GWGCWC 3 cut(s) 494, 523, 1169
BsiHKCI CYCGRG 1 cut(s) 978
BsiSI CCGG 2 cut(s) 362, 393
BslFI GGGAC 3 cut(s) 361, 403, 769
BslI CCNNNNNNNGG 7 cut(s) 170, 230, 386, 567, 580, 793, 826
BsmAI GTCTC 2 cut(s) 765, 1209
BsmFI GGGAC 3 cut(s) 361, 403, 769
BsmI GAATGC 2 cut(s) 266, 685
BsnI GGCC 3 cut(s) 306, 397, 1108
BsoBI CYCGRG 1 cut(s) 978
Bsp1286I GDGCHC 6 cut(s) 117, 494, 523, 819, 927, 1169
Bsp143I GATC 4 cut(s) 142, 173, 740, 974
Bsp19I CCATGG 1 cut(s) 301
BspANI GGCC 3 cut(s) 306, 397, 1108
BspCNI CTCAG 2 cut(s) 339, 480
BspLI GGNNCC 6 cut(s) 175, 391, 572, 640, 845, 1284
BspMAI CTGCAG 1 cut(s) 733
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 3 cut(s) 168, 181, 982
BspT107I GGYRCC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 1287
BsrI ACTGG 1 cut(s) 660
BssECI CCNNGG 3 cut(s) 117, 301, 339
BssMI GATC 4 cut(s) 142, 173, 740, 974
BssNI GRCGYC 1 cut(s) 639
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 117, 301
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 897, 1241
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 639
BstAPI GCANNNNNTGC 2 cut(s) 662, 728
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 937
BstDEI CTNAG 4 cut(s) 347, 488, 768, 914
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 4 cut(s) 189, 835, 1017, 1183
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 4 cut(s) 145, 176, 743, 977
BstMAI GTCTC 2 cut(s) 765, 1209
BstMBI GATC 4 cut(s) 142, 173, 740, 974
BstMWI GCNNNNNNNGC 6 cut(s) 104, 518, 662, 701, 728, 869
BstNI CCWGG 2 cut(s) 897, 1241
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 3 cut(s) 392, 895, 1239
BstSFI CTRYAG 2 cut(s) 729, 837
BstSLI GKGCMC 1 cut(s) 819
BstV1I GCAGC 8 cut(s) 364, 491, 499, 668, 715, 743, 850, 879
BstX2I RGATCY 2 cut(s) 173, 974
BstYI RGATCY 2 cut(s) 173, 974
BsuI GTATCC 1 cut(s) 848
BsuRI GGCC 3 cut(s) 306, 397, 1108
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 4 cut(s) 189, 835, 1017, 1183
BtsI GCAGTG 2 cut(s) 539, 729
BtsIMutI CAGTG 6 cut(s) 194, 344, 485, 539, 667, 729
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 937
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 1 cut(s) 641
Cfr13I GGNCC 2 cut(s) 390, 395
CviAII CATG 5 cut(s) 302, 457, 507, 1046, 1219
DdeI CTNAG 4 cut(s) 347, 488, 768, 914
DinI GGCGCC 1 cut(s) 640
DpnI GATC 4 cut(s) 144, 175, 742, 976
DpnII GATC 4 cut(s) 142, 173, 740, 974
DraI TTTAAA 1 cut(s) 1140
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 117, 301
Eco24I GRGCYC 2 cut(s) 117, 927
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 629
Eco88I CYCGRG 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 895, 1239
EcoT14I CCWWGG 2 cut(s) 117, 301
EcoT22I ATGCAT 1 cut(s) 628
EcoT38I GRGCYC 2 cut(s) 117, 927
EgeI GGCGCC 1 cut(s) 640
EheI GGCGCC 1 cut(s) 640
ErhI CCWWGG 2 cut(s) 117, 301
FaeI CATG 5 cut(s) 305, 460, 510, 1049, 1222
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 3 cut(s) 361, 403, 769
FatI CATG 5 cut(s) 301, 456, 506, 1045, 1218
Fnu4HI GCNGC 8 cut(s) 353, 480, 513, 657, 729, 732, 864, 893
FokI GGATG 4 cut(s) 196, 842, 1004, 1190
FriOI GRGCYC 2 cut(s) 117, 927
Fsp4HI GCNGC 8 cut(s) 353, 480, 513, 657, 729, 732, 864, 893
FspBI CTAG 3 cut(s) 516, 609, 1131
GlaI GCGC 1 cut(s) 640
GluI GCNGC 8 cut(s) 353, 480, 513, 657, 729, 732, 864, 893
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 3 cut(s) 306, 397, 1108
HapII CCGG 2 cut(s) 362, 393
HhaI GCGC 1 cut(s) 641
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 5 cut(s) 305, 460, 510, 1049, 1222
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 2 cut(s) 74, 745
HinfI GANTC 5 cut(s) 211, 374, 833, 1004, 1267
HpaII CCGG 2 cut(s) 362, 393
HphI GGTGA 7 cut(s) 485, 994, 1099, 1129, 1174, 1210, 1276
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 7 cut(s) 20, 202, 210, 648, 691, 829, 1009
Hpy188III TCNNGA 5 cut(s) 146, 181, 413, 548, 738
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 4 cut(s) 317, 368, 653, 1098
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 2 cut(s) 150, 463
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 518, 662, 701, 728, 869
HpyF3I CTNAG 4 cut(s) 347, 488, 768, 914
HpySE526I ACGT 2 cut(s) 150, 463
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 5 cut(s) 305, 460, 510, 1049, 1222
HspAI GCGC 1 cut(s) 639
KasI GGCGCC 1 cut(s) 638
Kzo9I GATC 4 cut(s) 142, 173, 740, 974
LmnI GCTCC 4 cut(s) 103, 360, 889, 1243
Lsp1109I GCAGC 8 cut(s) 364, 491, 499, 668, 715, 743, 850, 879
LweI GCATC 4 cut(s) 325, 466, 635, 1163
MaeI CTAG 3 cut(s) 516, 609, 1131
MaeII ACGT 2 cut(s) 150, 463
MaeIII GTNAC 6 cut(s) 146, 151, 192, 459, 697, 1198
MalI GATC 4 cut(s) 144, 175, 742, 976
MboI GATC 4 cut(s) 142, 173, 740, 974
MboII GAAGA 4 cut(s) 33, 118, 199, 246
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 2 cut(s) 173, 974
MhlI GDGCHC 6 cut(s) 117, 494, 523, 819, 927, 1169
MluCI AATT 4 cut(s) 444, 467, 1090, 1110
Mly113I GGCGCC 1 cut(s) 639
MlyI GAGTC 4 cut(s) 205, 383, 827, 1013
MmeI TCCRAC 3 cut(s) 71, 807, 867
Mph1103I ATGCAT 1 cut(s) 628
MseI TTAA 3 cut(s) 33, 960, 1139
MslI CAYNNNNRTG 1 cut(s) 1026
MspI CCGG 2 cut(s) 362, 393
MspR9I CCNGG 3 cut(s) 394, 897, 1241
MssI GTTTAAAC 1 cut(s) 1140
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 2 cut(s) 266, 685
MvaI CCWGG 2 cut(s) 897, 1241
MwoI GCNNNNNNNGC 6 cut(s) 104, 518, 662, 701, 728, 869
NarI GGCGCC 1 cut(s) 639
NciI CCSGG 1 cut(s) 394
NcoI CCATGG 1 cut(s) 301
NdeII GATC 4 cut(s) 142, 173, 740, 974
NlaIII CATG 5 cut(s) 305, 460, 510, 1049, 1222
NlaIV GGNNCC 6 cut(s) 175, 391, 572, 640, 845, 1284
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 5 cut(s) 146, 192, 459, 697, 1198
NsiI ATGCAT 1 cut(s) 628
NspI RCATGY 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 2 cut(s) 266, 685
PfeI GAWTC 1 cut(s) 1267
PflMI CCANNNNNTGG 1 cut(s) 793
PkrI GCNGC 8 cut(s) 354, 481, 514, 658, 730, 733, 865, 894
PleI GAGTC 4 cut(s) 205, 382, 827, 1012
PluTI GGCGCC 1 cut(s) 642
PmeI GTTTAAAC 1 cut(s) 1140
PpsI GAGTC 4 cut(s) 205, 382, 827, 1012
Ppu21I YACGTR 1 cut(s) 464
PsiI TTATAA 1 cut(s) 1071
Psp6I CCWGG 2 cut(s) 895, 1239
PspGI CCWGG 2 cut(s) 895, 1239
PspN4I GGNNCC 6 cut(s) 175, 391, 572, 640, 845, 1284
PspPI GGNCC 2 cut(s) 390, 395
PstI CTGCAG 1 cut(s) 733
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 2 cut(s) 173, 974
RseI CAYNNNNRTG 1 cut(s) 1026
SaqAI TTAA 3 cut(s) 33, 960, 1139
SatI GCNGC 8 cut(s) 353, 480, 513, 657, 729, 732, 864, 893
Sau3AI GATC 4 cut(s) 142, 173, 740, 974
Sau96I GGNCC 2 cut(s) 390, 395
SchI GAGTC 4 cut(s) 205, 383, 827, 1013
ScrFI CCNGG 3 cut(s) 394, 897, 1241
SduI GDGCHC 6 cut(s) 117, 494, 523, 819, 927, 1169
SfaNI GCATC 4 cut(s) 325, 466, 635, 1163
SfcI CTRYAG 2 cut(s) 729, 837
SfoI GGCGCC 1 cut(s) 640
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 1026
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
Sse9I AATT 4 cut(s) 444, 467, 1090, 1110
SspDI GGCGCC 1 cut(s) 638
SspI AATATT 1 cut(s) 1126
SspMI CTAG 3 cut(s) 516, 609, 1131
StyD4I CCNGG 3 cut(s) 392, 895, 1239
StyI CCWWGG 2 cut(s) 117, 301
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 2 cut(s) 153, 466
TaqI TCGA 2 cut(s) 258, 267
TasI AATT 4 cut(s) 444, 467, 1090, 1110
TfiI GAWTC 1 cut(s) 1267
Tru1I TTAA 3 cut(s) 33, 960, 1139
Tru9I TTAA 3 cut(s) 33, 960, 1139
TscAI CASTG 6 cut(s) 201, 351, 492, 546, 667, 729
TseFI GTSAC 5 cut(s) 146, 192, 459, 697, 1198
TseI GCWGC 8 cut(s) 352, 479, 512, 656, 728, 731, 863, 892
Tsp45I GTSAC 5 cut(s) 146, 192, 459, 697, 1198
TspDTI ATGAA 6 cut(s) 17, 200, 487, 1006, 1034, 1052
TspRI CASTG 6 cut(s) 201, 351, 492, 546, 667, 729
Van91I CCANNNNNTGG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 1 cut(s) 1090
XceI RCATGY 1 cut(s) 460
XspI CTAG 3 cut(s) 516, 609, 1131
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.