Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001493.1

Orthogroup ID

OG0017041

Physical Location & Seq

Genomic Coordinates Reverse (-)

72944 .. 74234

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001493.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgttagcgcatttatggccgtgcgcgtatcttgattcttatgagagtattagagaacagcccaattctcattgtcgcggcctcacgaacaactctcacttagaaatattgcacaagtctcctcctaagctctctgtgttgtcccaatctgtggatattcgcaaaagggtcgtgccccctttgtcggatgactctatagggaaccttgtgggatactttgctgcacaggcaaatgagagtgagttggagctgccaggcttggttgctcaactaaggaaagggctcaaagagtcgagcaactattgtgccgaaagacttaaagggagtgatggatctcgggtgattatagaatctttcaaagagtcagatgatttcatccatagagatgacattatgaactttcatgtctgcacaggtttgagtgattataaggtattgtatgaggtgaattttgggtggggaaggccaatttgggtgagtaatattcctagtggtttaaacagaaatgtagcatcattggtgagcacaagagaggatgatggaacagaggcttgggtgactttgagtgagggagacatggcgacttttgaacagaaccaggagcttcttgcatttgctgtggtgaatccaagtgtcttggaacccattgcattgaagtctgctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

222

Amino Acids

24.68

Weight (kDa)

5.05

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26040
fragaria_vesca	FvH4_3g15920
malus_domestica	MD05G1218200.v1.1 MD16G1109400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0026761
rosa_laevigata	RLG00000032959
rosa_multiflora	Rmu_sc0001493.1_g000016 Rmu_ssc0000172.1_g000028 Rmu_ssc0000172.1_g000030
rosa_roxburghii	Rroxscaffold_1G00052730
rosa_rugosa	Rorug05G0095400
rosa_samantha	Rh5DG187500
rosa_wichuraiana	Rw5G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	151
AccII	CGCG	2 cut(s)	26, 78
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	448
AfiI	CCNNNNNNNGG	2 cut(s)	151, 184
AgsI	TTSAA	3 cut(s)	358, 590, 655
AjnI	CCWGG	2 cut(s)	253, 597
AjuI	GAANNNNNNNTTGG	4 cut(s)	454, 486, 535, 567
AluBI	AGCT	3 cut(s)	130, 250, 604
AluI	AGCT	3 cut(s)	130, 250, 604
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	2 cut(s)	123, 567
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	3 cut(s)	17, 79, 464
ApeKI	GCWGC	2 cut(s)	221, 250
ApoI	RAATTY	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	10, 26
AsuHPI	GGTGA	6 cut(s)	352, 457, 487, 532, 568, 634
AvaI	CYCGRG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	2 cut(s)	208, 237
BccI	CCATC	2 cut(s)	323, 533
BceAI	ACGGC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	2 cut(s)	255, 599
BciVI	GTATCC	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	123, 567
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	79, 222, 251
BlsI	GCNGC	3 cut(s)	80, 223, 252
Bme1390I	CCNGG	2 cut(s)	255, 599
BmeT110I	CYCGRG	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	203, 642
BmrFI	CCNGG	2 cut(s)	255, 599
BmsI	GCATC	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 184
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	255, 599
BseGI	GGATG	3 cut(s)	193, 375, 541
BseLI	CCNNNNNNNGG	2 cut(s)	151, 184
BseMI	GCAATG	1 cut(s)	645
BseRI	GAGGAG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	208, 237
BsgI	GTGCAG	2 cut(s)	207, 394
Bsh1236I	CGCG	2 cut(s)	26, 78
BshFI	GGCC	3 cut(s)	19, 81, 466
BsiHKAI	GWGCWC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	151, 184
BsmAI	GTCTC	2 cut(s)	123, 567
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	3 cut(s)	19, 81, 466
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	3 cut(s)	177, 285, 527
Bsp143I	GATC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	3 cut(s)	19, 81, 466
BspFNI	CGCG	2 cut(s)	26, 78
BspLI	GGNNCC	2 cut(s)	203, 642
BspPI	GGATC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	645
BssMI	GATC	1 cut(s)	332
Bst2UI	CCWGG	2 cut(s)	255, 599
BstDEI	CTNAG	3 cut(s)	100, 126, 272
BstF5I	GGATG	3 cut(s)	193, 375, 541
BstFNI	CGCG	2 cut(s)	26, 78
BstHHI	GCGC	2 cut(s)	10, 26
BstKTI	GATC	1 cut(s)	335
BstMAI	GTCTC	2 cut(s)	123, 567
BstMBI	GATC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 227
BstNI	CCWGG	2 cut(s)	255, 599
BstSCI	CCNGG	2 cut(s)	253, 597
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	2 cut(s)	26, 78
BstV1I	GCAGC	2 cut(s)	208, 237
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	19, 81, 466
BtsCI	GGATG	3 cut(s)	193, 375, 541
CfoI	GCGC	2 cut(s)	10, 26
CviAII	CATG	2 cut(s)	404, 577
DdeI	CTNAG	3 cut(s)	100, 126, 272
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	253, 597
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	2 cut(s)	407, 580
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	403, 576
Fnu4HI	GCNGC	3 cut(s)	79, 222, 251
FokI	GGATG	3 cut(s)	200, 362, 548
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	79, 222, 251
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	2 cut(s)	9, 25
GluI	GCNGC	3 cut(s)	79, 222, 251
HaeIII	GGCC	3 cut(s)	19, 81, 466
HhaI	GCGC	2 cut(s)	10, 26
Hin1II	CATG	2 cut(s)	407, 580
Hin6I	GCGC	2 cut(s)	8, 24
HinP1I	GCGC	2 cut(s)	8, 24
HinfI	GANTC	6 cut(s)	35, 191, 290, 350, 362, 625
HphI	GGTGA	6 cut(s)	352, 457, 487, 532, 568, 634
Hpy188I	TCNGA	2 cut(s)	187, 367
Hpy188III	TCNNGA	2 cut(s)	32, 85
HpyAV	CCTTC	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	112, 224, 411, 611, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 227
HpyF3I	CTNAG	3 cut(s)	100, 126, 272
Hsp92II	CATG	2 cut(s)	407, 580
HspAI	GCGC	2 cut(s)	8, 24
Kzo9I	GATC	1 cut(s)	332
LmnI	GCTCC	2 cut(s)	247, 601
LpnPI	CCDG	6 cut(s)	212, 240, 267, 399, 584, 611
Lsp1109I	GCAGC	2 cut(s)	208, 237
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	3 cut(s)	177, 285, 527
MluCI	AATT	3 cut(s)	64, 448, 468
MlyI	GAGTC	3 cut(s)	185, 299, 371
MmeI	TCCRAC	2 cut(s)	165, 225
MnlI	CCTC	6 cut(s)	92, 132, 436, 526, 541, 562
MseI	TTAA	2 cut(s)	318, 497
MslI	CAYNNNNRTG	1 cut(s)	384
MspR9I	CCNGG	2 cut(s)	255, 599
MssI	GTTTAAAC	1 cut(s)	498
MvaI	CCWGG	2 cut(s)	255, 599
MvnI	CGCG	2 cut(s)	26, 78
MwoI	GCNNNNNNNGC	2 cut(s)	16, 227
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	2 cut(s)	407, 580
NlaIV	GGNNCC	2 cut(s)	203, 642
NmuCI	GTSAC	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	35, 350, 625
PflMI	CCANNNNNTGG	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	80, 223, 252
PleI	GAGTC	3 cut(s)	185, 298, 370
PmeI	GTTTAAAC	1 cut(s)	498
PpsI	GAGTC	3 cut(s)	185, 298, 370
PsiI	TTATAA	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	253, 597
PspGI	CCWGG	2 cut(s)	253, 597
PspN4I	GGNNCC	2 cut(s)	203, 642
PsuI	RGATCY	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	318, 497
SatI	GCNGC	3 cut(s)	79, 222, 251
Sau3AI	GATC	1 cut(s)	332
SchI	GAGTC	3 cut(s)	185, 299, 371
ScrFI	CCNGG	2 cut(s)	255, 599
SduI	GDGCHC	3 cut(s)	177, 285, 527
SetI	ASST	7 cut(s)	132, 207, 252, 418, 435, 447, 606
SfaNI	GCATC	1 cut(s)	521
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	64, 448, 468
SsiI	CCGC	1 cut(s)	78
SspI	AATATT	2 cut(s)	108, 484
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	253, 597
TaqI	TCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	64, 448, 468
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	3 cut(s)	35, 350, 625
Tru1I	TTAA	2 cut(s)	318, 497
Tru9I	TTAA	2 cut(s)	318, 497
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	221, 250
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	364, 392, 410
Van91I	CCANNNNNTGG	1 cut(s)	151
XapI	RAATTY	1 cut(s)	448
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.