Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007305

Physical Location & Seq

Genomic Coordinates Reverse (-)

10444550 .. 10446894

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCAAACAGCTTCGTATCTCCATACATTCCCTTATTGCTCTTACAGAAGAAGCTCGTTTAAATCAGATGGGTGGAATAAATTACAAATCCCGTACTCGAGTCGGCTTCCTGAGAAAGTTGTGCTAATTGGCAGGCCTCAGACATGTAAGCTTCTCAGGCCCTTGAAAGAGACTAGATTGTGTGCAGTTCCCAACACAGATGATGGTCACCCTTCTGTCTCTGTGTTGGAAGATTCCAATATGAATCACGCACCCACTTCGGAAGAGGAGACATTGTTCAGCAAATGGACGCCTCCCAGGTATTTGTGGAGGGGATTTTCAGCTCTTATCCTGGCAGGTCAGGTCATCATTAGAACTTTAAAGGGTAAAGTGCACTGGAAAAATACACTCCAACAGTTGAGAAGAGTTGGGCCAAGTTCGGTTGGGGTCTGCCTCTTAACTGCAGCATTCGTTGGCATGGCCTTCACCATCCAGTTTGTTAGGGAATTTACCAGATTAGGATTAAGCAGAGCTGTTGGTGGGGTGTTGGCCCTGGCTTTCGCAAGGGAGTTGAGCCCTGTAGTTACATCAATTGTGGTTGCAGGGCGTATTGGAAGTGCATTTGCTGCAGAGTTAGGAACAATGCAGGTTTCGGAGCAAACTGATACATTGAGAGTTCTTGGAGCAAACCCTGTTGATTATCTTGTGACACCAAGGGTGATTGCTACCTCCATTGCTCTACCGTTTCTGACCCTAATGTGTTTCACAGTAGGAATGGCATCCAGCGCTCTCCTTGCTGATGGTATTTATGGGGTTAGCATTAACATTATTCTGGAGTCAGCTCGGAGAGCTCTTAAACCTTGGGATATAATTAGCGCAATGATCAAGTCACAGGCTTTCGGTGCTATCATATCGATTGTAAGTTGTGCTTGGGGAGTTACCACCATGGGAGGAGCCAAAGGTGTTGGGGAGTCAACGACATCGGCTGTGGTCATCTCTCTTGTTGGAATCTTTATTGCAGATTTTGTTCTCTCTTATTTTTTCTTCCAAGGAGTTGGAGATTCACTGAAGAATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaE PUNUT

Protein Analysis

353

Amino Acids

38.14

Weight (kDa)

9.53

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MlaE	PF02405	130 - 339	3.2e-68	Permease MlaE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19800 AT1G19800 AT1G19800 AT1G19800 AT1G19800 AT1G19800
fragaria_vesca	FvH4_3g16560
malus_domestica	MD05G1209200.v1.1 MD10G1195600.v1.1
prunus_persica	Prupe.4G148300_v2.0.a1 Prupe.4G148300_v2.0.a1
pyrus_communis	pycom05g19530
rosa_chinensis	RchiOBHm_Chr5g0027591
rosa_laevigata	RLG00000033031
rosa_multiflora	Rmu_sc0001647.1_g000008 Rmu_sc0011056.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051940
rosa_rugosa	Rorug05G0099900 Rorug05G0099900 Rorug05G0100000
rosa_samantha	Rh5AG194300 Rh5BG192400 Rh5CG212400 Rh5DG194100
rosa_wichuraiana	Rw5G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	326, 616
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	1 cut(s)	95
AfeI	AGCGCT	1 cut(s)	766
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	3 cut(s)	296, 330, 531
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	7 cut(s)	11, 54, 151, 323, 512, 821, 830
AluI	AGCT	7 cut(s)	11, 54, 151, 323, 512, 821, 830
Alw21I	GWGCWC	2 cut(s)	375, 832
Alw26I	GTCTC	3 cut(s)	164, 223, 263
Alw44I	GTGCAC	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	97
Aor51HI	AGCGCT	1 cut(s)	766
AoxI	GGCC	5 cut(s)	134, 158, 410, 459, 528
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	443, 605
ApoI	RAATTY	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	767, 857
AspS9I	GGNCC	3 cut(s)	159, 410, 529
AsuHPI	GGTGA	3 cut(s)	200, 457, 709
AvaI	CYCGRG	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	375
BanII	GRGCYC	2 cut(s)	557, 832
Bbv12I	GWGCWC	2 cut(s)	375, 832
BbvI	GCAGC	2 cut(s)	455, 592
BccI	CCATC	4 cut(s)	62, 197, 476, 773
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	3 cut(s)	298, 332, 533
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	3 cut(s)	164, 223, 263
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	4 cut(s)	441, 558, 606, 1055
BfoI	RGCGCY	1 cut(s)	768
BfuAI	ACCTGC	2 cut(s)	326, 616
BisI	GCNGC	2 cut(s)	444, 606
BlsI	GCNGC	2 cut(s)	445, 607
Bme1390I	CCNGG	3 cut(s)	298, 332, 533
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	159, 410, 529
BmiI	GGNNCC	1 cut(s)	934
BmrFI	CCNGG	3 cut(s)	298, 332, 533
BmsI	GCATC	1 cut(s)	767
BpmI	CTGGAG	1 cut(s)	833
Bsa29I	ATCGAT	1 cut(s)	893
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	6 cut(s)	296, 531, 692, 839, 924, 1027
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse1I	ACTGG	2 cut(s)	380, 472
Bse3DI	GCAATG	2 cut(s)	711, 864
BseBI	CCWGG	3 cut(s)	298, 332, 533
BseCI	ATCGAT	1 cut(s)	893
BseDI	CCNNGG	6 cut(s)	296, 531, 692, 839, 924, 1027
BseGI	GGATG	2 cut(s)	468, 758
BseMI	GCAATG	2 cut(s)	711, 864
BseMII	CTCAG	3 cut(s)	102, 152, 169
BseNI	ACTGG	2 cut(s)	380, 472
BseRI	GAGGAG	2 cut(s)	281, 945
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	455, 592
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	5 cut(s)	136, 160, 412, 461, 530
BshVI	ATCGAT	1 cut(s)	893
BsiHKAI	GWGCWC	2 cut(s)	375, 832
BsiHKCI	CYCGRG	1 cut(s)	97
BsmAI	GTCTC	3 cut(s)	164, 223, 263
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	5 cut(s)	136, 160, 412, 461, 530
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	3 cut(s)	375, 557, 832
Bsp143I	GATC	1 cut(s)	861
Bsp19I	CCATGG	1 cut(s)	924
BspANI	GGCC	5 cut(s)	136, 160, 412, 461, 530
BspCNI	CTCAG	3 cut(s)	103, 151, 168
BspDI	ATCGAT	1 cut(s)	893
BspLI	GGNNCC	1 cut(s)	934
BspMAI	CTGCAG	2 cut(s)	445, 610
BspMI	ACCTGC	2 cut(s)	326, 616
BsrDI	GCAATG	2 cut(s)	711, 864
BsrI	ACTGG	2 cut(s)	380, 472
BssECI	CCNNGG	6 cut(s)	296, 531, 692, 839, 924, 1027
BssMI	GATC	1 cut(s)	861
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	4 cut(s)	692, 839, 924, 1027
Bst2UI	CCWGG	3 cut(s)	298, 332, 533
Bst4CI	ACNGT	3 cut(s)	396, 723, 748
Bst6I	CTCTTC	2 cut(s)	258, 397
BstACI	GRCGYC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	3 cut(s)	111, 138, 155
BstDSI	CCRYGG	1 cut(s)	924
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	468, 758
BstH2I	RGCGCY	1 cut(s)	768
BstHHI	GCGC	2 cut(s)	767, 857
BstKTI	GATC	1 cut(s)	864
BstMAI	GTCTC	3 cut(s)	164, 223, 263
BstMBI	GATC	1 cut(s)	861
BstMWI	GCNNNNNNNGC	6 cut(s)	157, 605, 764, 773, 827, 881
BstNI	CCWGG	3 cut(s)	298, 332, 533
BstNSI	RCATGY	1 cut(s)	147
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	296, 330, 531
BstSFI	CTRYAG	4 cut(s)	441, 558, 606, 1055
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	455, 592
BstXI	CCANNNNNNTGG	1 cut(s)	1034
Bsu15I	ATCGAT	1 cut(s)	893
BsuRI	GGCC	5 cut(s)	136, 160, 412, 461, 530
BsuTUI	ATCGAT	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	924
BtsCI	GGATG	2 cut(s)	468, 758
BtsIMutI	CAGTG	2 cut(s)	373, 1043
BveI	ACCTGC	2 cut(s)	326, 616
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	2 cut(s)	767, 857
Cfr13I	GGNCC	3 cut(s)	159, 410, 529
ClaI	ATCGAT	1 cut(s)	893
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	3 cut(s)	144, 457, 925
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	3 cut(s)	111, 138, 155
DpnI	GATC	1 cut(s)	863
DpnII	GATC	1 cut(s)	861
DraI	TTTAAA	2 cut(s)	61, 360
Eam1104I	CTCTTC	2 cut(s)	258, 397
EarI	CTCTTC	2 cut(s)	258, 397
Ecl136II	GAGCTC	1 cut(s)	830
Eco130I	CCWWGG	4 cut(s)	692, 839, 924, 1027
Eco147I	AGGCCT	1 cut(s)	136
Eco24I	GRGCYC	2 cut(s)	557, 832
Eco47III	AGCGCT	1 cut(s)	766
Eco53kI	GAGCTC	1 cut(s)	830
Eco88I	CYCGRG	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	830
EcoO109I	RGGNCCY	1 cut(s)	159
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	296, 330, 531
EcoT14I	CCWWGG	4 cut(s)	692, 839, 924, 1027
EcoT38I	GRGCYC	2 cut(s)	557, 832
ErhI	CCWWGG	4 cut(s)	692, 839, 924, 1027
FaeI	CATG	3 cut(s)	147, 460, 928
FaiI	YATR	9 cut(s)	24, 145, 242, 458, 789, 848, 890, 926, 1057
FalI	AAGNNNNNCTT	2 cut(s)	892, 924
FatI	CATG	3 cut(s)	143, 456, 924
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	444, 606
FokI	GGATG	2 cut(s)	455, 745
FriOI	GRGCYC	2 cut(s)	557, 832
Fsp4HI	GCNGC	2 cut(s)	444, 606
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	2 cut(s)	766, 856
GluI	GCNGC	2 cut(s)	444, 606
GsuI	CTGGAG	1 cut(s)	833
HaeII	RGCGCY	1 cut(s)	768
HaeIII	GGCC	5 cut(s)	136, 160, 412, 461, 530
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	2 cut(s)	767, 857
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	147, 460, 928
Hin6I	GCGC	2 cut(s)	765, 855
HinP1I	GCGC	2 cut(s)	765, 855
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	8 cut(s)	100, 233, 244, 815, 950, 987, 1040, 1051
HphI	GGTGA	3 cut(s)	200, 457, 709
Hpy166II	GTNNAC	2 cut(s)	373, 954
Hpy188I	TCNGA	6 cut(s)	67, 141, 262, 634, 729, 825
Hpy188III	TCNNGA	2 cut(s)	110, 812
Hpy8I	GTNNAC	2 cut(s)	373, 954
HpyAV	CCTTC	2 cut(s)	222, 472
HpyCH4III	ACNGT	3 cut(s)	396, 723, 748
HpyCH4V	TGCA	9 cut(s)	4, 185, 373, 443, 581, 599, 608, 625, 998
HpyF10VI	GCNNNNNNNGC	6 cut(s)	157, 605, 764, 773, 827, 881
HpyF3I	CTNAG	3 cut(s)	111, 138, 155
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	147, 460, 928
HspAI	GCGC	2 cut(s)	765, 855
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	1 cut(s)	861
LmnI	GCTCC	3 cut(s)	634, 662, 932
Lsp1109I	GCAGC	2 cut(s)	455, 592
LweI	GCATC	1 cut(s)	767
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	5 cut(s)	206, 562, 685, 867, 916
MalI	GATC	1 cut(s)	863
MboI	GATC	1 cut(s)	861
MboII	GAAGA	5 cut(s)	60, 242, 275, 414, 1015
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	3 cut(s)	375, 557, 832
MluCI	AATT	5 cut(s)	80, 126, 485, 570, 849
MlyI	GAGTC	3 cut(s)	109, 824, 959
MmeI	TCCRAC	4 cut(s)	207, 415, 964, 1015
MnlI	CCTC	7 cut(s)	147, 259, 303, 303, 443, 718, 923
MseI	TTAA	6 cut(s)	60, 359, 437, 503, 801, 834
MspR9I	CCNGG	3 cut(s)	298, 332, 533
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	3 cut(s)	298, 332, 533
MwoI	GCNNNNNNNGC	6 cut(s)	157, 605, 764, 773, 827, 881
NcoI	CCATGG	1 cut(s)	924
NdeII	GATC	1 cut(s)	861
NlaIII	CATG	3 cut(s)	147, 460, 928
NlaIV	GGNNCC	1 cut(s)	934
NmuCI	GTSAC	3 cut(s)	206, 685, 867
NspI	RCATGY	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	136
PciI	ACATGT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	5 cut(s)	233, 244, 987, 1040, 1051
PkrI	GCNGC	2 cut(s)	445, 607
PleI	GAGTC	3 cut(s)	108, 823, 958
PpsI	GAGTC	3 cut(s)	108, 823, 958
PscI	ACATGT	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	832
Psp6I	CCWGG	3 cut(s)	296, 330, 531
PspEI	GGTNACC	1 cut(s)	206
PspGI	CCWGG	3 cut(s)	296, 330, 531
PspN4I	GGNNCC	1 cut(s)	934
PspPI	GGNCC	3 cut(s)	159, 410, 529
PspXI	VCTCGAGB	1 cut(s)	97
PstI	CTGCAG	2 cut(s)	445, 610
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	832
SaqAI	TTAA	6 cut(s)	60, 359, 437, 503, 801, 834
SatI	GCNGC	2 cut(s)	444, 606
Sau3AI	GATC	1 cut(s)	861
Sau96I	GGNCC	3 cut(s)	159, 410, 529
SchI	GAGTC	3 cut(s)	109, 824, 959
ScrFI	CCNGG	3 cut(s)	298, 332, 533
SduI	GDGCHC	3 cut(s)	375, 557, 832
SfaNI	GCATC	1 cut(s)	767
SfcI	CTRYAG	4 cut(s)	441, 558, 606, 1055
Sfr274I	CTCGAG	1 cut(s)	97
SlaI	CTCGAG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	5 cut(s)	80, 126, 485, 570, 849
SseBI	AGGCCT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	832
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	3 cut(s)	296, 330, 531
StyI	CCWWGG	4 cut(s)	692, 839, 924, 1027
TaaI	ACNGT	3 cut(s)	396, 723, 748
TaqI	TCGA	2 cut(s)	98, 893
TasI	AATT	5 cut(s)	80, 126, 485, 570, 849
TfiI	GAWTC	5 cut(s)	233, 244, 987, 1040, 1051
Tru1I	TTAA	6 cut(s)	60, 359, 437, 503, 801, 834
Tru9I	TTAA	6 cut(s)	60, 359, 437, 503, 801, 834
TscAI	CASTG	2 cut(s)	380, 1050
TseFI	GTSAC	3 cut(s)	206, 685, 867
TseI	GCWGC	2 cut(s)	443, 605
Tsp45I	GTSAC	3 cut(s)	206, 685, 867
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	380, 1050
VneI	GTGCAC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.