Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001647.1

Orthogroup ID

OG0007305

Physical Location & Seq

Genomic Coordinates Reverse (-)

31614 .. 32917

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001647.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggttatttggggacagatgatcgcacgtgattgtattggaagaggctctgtaaaaccagatgggtggaataaattacaaatcccgtattcgagtcagcgtgctgagaaagttgcgctcattggcaggcctcagacatgtaagcttctcaggcctttgaaagagaccagattgtgtgcagttcccaacacagatgatggccaccctcctgtccctgtgttggaagattccaatacgaatcacgcacctgcttcggaaggggagacattgttcagcaaatggtcacctcccaggcatctgtggaggggattgtcagcttttatcttggcaggtcaggtcatcattagaactttaaagggtaaagtgcactggaaaaatacactccaacagttgaggagagttggaccaaattcgactggggtctgcctcttaactgcagcatttgttggcatggccttcaccatccaatttgttagggagtttactagattagggttaagcagagctgttggtggggtattggccctggctttcgcaagggagttgagtcctgtagttacatcaattgtggttgcagggcgtattggaagtgcatttgctgcagagttaggaacaatgcaggtttctgagcaaactgacacattaagagttcttggagcaaaccctgttgattatcttgtgacaccaagggtaattgctacctgtattgctctaccatttctgactctgatgtgtttcacagtagggatggcatccagcgccctccttgctgatggtatttatggtgttagcattaacattattttggagtcagctcgcagagctcttaaaccttgggatataattagtgcaatgatcaagtcacaggcttttggtgctatcatatcaattgttagttgtgcttggggagttaccaccatgggaggagccaaaggtgttggggagtcaacgacttcggctgtggttatctctcttgttgggatctttattgcagattttgtactctcttattttttcttccaaggagttggagattcactgaagaatctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaE PUNUT

Protein Analysis

350

Amino Acids

37.55

Weight (kDa)

9.55

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19800 AT1G19800 AT1G19800 AT1G19800 AT1G19800 AT1G19800
fragaria_vesca	FvH4_3g16560
malus_domestica	MD05G1209200.v1.1 MD10G1195600.v1.1
prunus_persica	Prupe.4G148300_v2.0.a1 Prupe.4G148300_v2.0.a1
pyrus_communis	pycom05g19530
rosa_chinensis	RchiOBHm_Chr5g0027591
rosa_laevigata	RLG00000033031
rosa_multiflora	Rmu_sc0001647.1_g000008 Rmu_sc0011056.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051940
rosa_rugosa	Rorug05G0099900 Rorug05G0099900 Rorug05G0100000
rosa_samantha	Rh5AG194300 Rh5BG192400 Rh5CG212400 Rh5DG194100
rosa_wichuraiana	Rw5G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	3 cut(s)	256, 320, 610
AclWI	GGATC	1 cut(s)	989
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	409
AcvI	CACGTG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	1002
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	290, 525
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	145, 317, 506, 815, 824
AluI	AGCT	5 cut(s)	145, 317, 506, 815, 824
Alw21I	GWGCWC	2 cut(s)	369, 826
Alw26I	GTCTC	2 cut(s)	158, 257
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	989
AoxI	GGCC	5 cut(s)	128, 152, 199, 453, 522
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	437, 599
ApoI	RAATTY	1 cut(s)	409
AspLEI	GCGC	2 cut(s)	118, 761
AspS9I	GGNCC	2 cut(s)	404, 523
AsuHPI	GGTGA	2 cut(s)	276, 451
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	826
BbrPI	CACGTG	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	369, 826
BbvI	GCAGC	2 cut(s)	449, 586
BccI	CCATC	5 cut(s)	56, 191, 470, 742, 767
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	2 cut(s)	292, 527
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	158, 257
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	4 cut(s)	435, 552, 600, 1049
BfoI	RGCGCY	1 cut(s)	762
BfuAI	ACCTGC	3 cut(s)	256, 320, 610
BisI	GCNGC	2 cut(s)	438, 600
BlsI	GCNGC	2 cut(s)	439, 601
Bme1390I	CCNGG	2 cut(s)	292, 527
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	404, 523
BmiI	GGNNCC	1 cut(s)	928
BmrFI	CCNGG	2 cut(s)	292, 527
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	2 cut(s)	304, 761
BmuI	ACTGGG	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	6 cut(s)	290, 525, 686, 833, 918, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	374, 421
Bse3DI	GCAATG	1 cut(s)	858
BseBI	CCWGG	2 cut(s)	292, 527
BseDI	CCNNGG	6 cut(s)	290, 525, 686, 833, 918, 1021
BseGI	GGATG	3 cut(s)	462, 752, 753
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	4 cut(s)	96, 146, 163, 618
BseNI	ACTGG	2 cut(s)	374, 421
BseRI	GAGGAG	2 cut(s)	409, 939
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	449, 586
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	5 cut(s)	130, 154, 201, 455, 524
BsiHKAI	GWGCWC	2 cut(s)	369, 826
BslFI	GGGAC	2 cut(s)	27, 197
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	158, 257
BsmFI	GGGAC	2 cut(s)	27, 197
BsnI	GGCC	5 cut(s)	130, 154, 201, 455, 524
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	369, 826
Bsp143I	GATC	3 cut(s)	21, 855, 981
Bsp19I	CCATGG	1 cut(s)	918
BspANI	GGCC	5 cut(s)	130, 154, 201, 455, 524
BspCNI	CTCAG	4 cut(s)	97, 145, 162, 619
BspLI	GGNNCC	1 cut(s)	928
BspMAI	CTGCAG	2 cut(s)	439, 604
BspMI	ACCTGC	3 cut(s)	256, 320, 610
BspPI	GGATC	1 cut(s)	989
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	858
BsrI	ACTGG	2 cut(s)	374, 421
BssECI	CCNNGG	6 cut(s)	290, 525, 686, 833, 918, 1021
BssMI	GATC	3 cut(s)	21, 855, 981
BssT1I	CCWWGG	4 cut(s)	686, 833, 918, 1021
Bst2UI	CCWGG	2 cut(s)	292, 527
Bst4CI	ACNGT	2 cut(s)	390, 742
Bst6I	CTCTTC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	102, 128, 817
BstDEI	CTNAG	4 cut(s)	105, 132, 149, 627
BstDSI	CCRYGG	1 cut(s)	918
BstEII	GGTNACC	1 cut(s)	282
BstF5I	GGATG	3 cut(s)	462, 752, 753
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	2 cut(s)	118, 761
BstKTI	GATC	3 cut(s)	24, 858, 984
BstMAI	GTCTC	2 cut(s)	158, 257
BstMBI	GATC	3 cut(s)	21, 855, 981
BstMWI	GCNNNNNNNGC	6 cut(s)	151, 599, 758, 767, 821, 875
BstNI	CCWGG	2 cut(s)	292, 527
BstNSI	RCATGY	1 cut(s)	141
BstPAI	GACNNNNGTC	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	290, 525
BstSFI	CTRYAG	4 cut(s)	435, 552, 600, 1049
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	449, 586
BstX2I	RGATCY	1 cut(s)	981
BstXI	CCANNNNNNTGG	2 cut(s)	66, 1028
BstYI	RGATCY	1 cut(s)	981
BsuRI	GGCC	5 cut(s)	130, 154, 201, 455, 524
BtgI	CCRYGG	1 cut(s)	918
BtsCI	GGATG	3 cut(s)	462, 752, 753
BtsIMutI	CAGTG	2 cut(s)	367, 1037
BveI	ACCTGC	3 cut(s)	256, 320, 610
Cac8I	GCNNGC	3 cut(s)	102, 128, 817
CfoI	GCGC	2 cut(s)	118, 761
Cfr13I	GGNCC	2 cut(s)	404, 523
Csp6I	GTAC	1 cut(s)	1001
CviAII	CATG	3 cut(s)	138, 451, 919
CviQI	GTAC	1 cut(s)	1001
DdeI	CTNAG	4 cut(s)	105, 132, 149, 627
DpnI	GATC	3 cut(s)	23, 857, 983
DpnII	GATC	3 cut(s)	21, 855, 981
DraI	TTTAAA	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	824
Eco130I	CCWWGG	4 cut(s)	686, 833, 918, 1021
Eco147I	AGGCCT	2 cut(s)	130, 154
Eco24I	GRGCYC	1 cut(s)	826
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	404
Eco53kI	GAGCTC	1 cut(s)	824
Eco72I	CACGTG	1 cut(s)	29
Eco91I	GGTNACC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	824
EcoO65I	GGTNACC	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	290, 525
EcoT14I	CCWWGG	4 cut(s)	686, 833, 918, 1021
EcoT38I	GRGCYC	1 cut(s)	826
ErhI	CCWWGG	4 cut(s)	686, 833, 918, 1021
FaeI	CATG	3 cut(s)	141, 454, 922
FaiI	YATR	7 cut(s)	139, 452, 783, 842, 884, 920, 1051
FaqI	GGGAC	2 cut(s)	27, 197
FatI	CATG	3 cut(s)	137, 450, 918
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	2 cut(s)	438, 600
FokI	GGATG	3 cut(s)	449, 739, 760
FriOI	GRGCYC	1 cut(s)	826
Fsp4HI	GCNGC	2 cut(s)	438, 600
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	2 cut(s)	117, 760
GluI	GCNGC	2 cut(s)	438, 600
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	5 cut(s)	130, 154, 201, 455, 524
HhaI	GCGC	2 cut(s)	118, 761
Hin1II	CATG	3 cut(s)	141, 454, 922
Hin6I	GCGC	2 cut(s)	116, 759
HinP1I	GCGC	2 cut(s)	116, 759
HincII	GTYRAC	1 cut(s)	948
HindII	GTYRAC	1 cut(s)	948
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	9 cut(s)	94, 227, 238, 547, 724, 809, 944, 1034, 1045
HphI	GGTGA	2 cut(s)	276, 451
Hpy166II	GTNNAC	3 cut(s)	367, 483, 948
Hpy188I	TCNGA	5 cut(s)	135, 256, 628, 723, 729
Hpy8I	GTNNAC	3 cut(s)	367, 483, 948
HpyAV	CCTTC	2 cut(s)	251, 466
HpyCH4III	ACNGT	2 cut(s)	390, 742
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	9 cut(s)	179, 367, 437, 575, 593, 602, 619, 851, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	151, 599, 758, 767, 821, 875
HpyF3I	CTNAG	4 cut(s)	105, 132, 149, 627
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	141, 454, 922
HspAI	GCGC	2 cut(s)	116, 759
Ksp22I	TGATCA	1 cut(s)	855
Kzo9I	GATC	3 cut(s)	21, 855, 981
LmnI	GCTCC	2 cut(s)	656, 926
Lsp1109I	GCAGC	2 cut(s)	449, 586
LweI	GCATC	2 cut(s)	304, 761
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	5 cut(s)	282, 556, 679, 861, 910
MalI	GATC	3 cut(s)	23, 857, 983
MboI	GATC	3 cut(s)	21, 855, 981
MboII	GAAGA	3 cut(s)	54, 236, 1009
MfeI	CAATTG	2 cut(s)	564, 888
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	2 cut(s)	369, 826
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	7 cut(s)	74, 409, 467, 564, 693, 843, 888
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	5 cut(s)	103, 556, 718, 818, 953
MmeI	TCCRAC	4 cut(s)	201, 382, 409, 1009
MnlI	CCTC	9 cut(s)	38, 141, 216, 297, 297, 387, 437, 773, 917
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	6 cut(s)	353, 431, 497, 644, 795, 828
Msp20I	TGGCCA	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	292, 527
MunI	CAATTG	2 cut(s)	564, 888
MvaI	CCWGG	2 cut(s)	292, 527
MwoI	GCNNNNNNNGC	6 cut(s)	151, 599, 758, 767, 821, 875
NcoI	CCATGG	1 cut(s)	918
NdeII	GATC	3 cut(s)	21, 855, 981
NlaIII	CATG	3 cut(s)	141, 454, 922
NlaIV	GGNNCC	1 cut(s)	928
NmuCI	GTSAC	3 cut(s)	282, 679, 861
NspI	RCATGY	1 cut(s)	141
PaqCI	CACCTGC	1 cut(s)	256
PceI	AGGCCT	2 cut(s)	130, 154
PciI	ACATGT	1 cut(s)	137
PfeI	GAWTC	4 cut(s)	227, 238, 1034, 1045
PkrI	GCNGC	2 cut(s)	439, 601
PleI	GAGTC	5 cut(s)	102, 555, 718, 817, 952
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
PpsI	GAGTC	5 cut(s)	102, 555, 718, 817, 952
Ppu21I	YACGTR	1 cut(s)	29
PscI	ACATGT	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	826
Psp6I	CCWGG	2 cut(s)	290, 525
PspCI	CACGTG	1 cut(s)	29
PspEI	GGTNACC	1 cut(s)	282
PspGI	CCWGG	2 cut(s)	290, 525
PspN4I	GGNNCC	1 cut(s)	928
PspPI	GGNCC	2 cut(s)	404, 523
PstI	CTGCAG	2 cut(s)	439, 604
PsuI	RGATCY	1 cut(s)	981
RsaI	GTAC	1 cut(s)	1002
RsaNI	GTAC	1 cut(s)	1001
SacI	GAGCTC	1 cut(s)	826
SaqAI	TTAA	6 cut(s)	353, 431, 497, 644, 795, 828
SatI	GCNGC	2 cut(s)	438, 600
Sau3AI	GATC	3 cut(s)	21, 855, 981
Sau96I	GGNCC	2 cut(s)	404, 523
SchI	GAGTC	5 cut(s)	103, 556, 718, 818, 953
ScrFI	CCNGG	2 cut(s)	292, 527
SduI	GDGCHC	2 cut(s)	369, 826
SfaNI	GCATC	2 cut(s)	304, 761
SfcI	CTRYAG	4 cut(s)	435, 552, 600, 1049
SinI	GGWCC	1 cut(s)	404
Sse9I	AATT	7 cut(s)	74, 409, 467, 564, 693, 843, 888
SseBI	AGGCCT	2 cut(s)	130, 154
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	826
StuI	AGGCCT	2 cut(s)	130, 154
StyD4I	CCNGG	2 cut(s)	290, 525
StyI	CCWWGG	4 cut(s)	686, 833, 918, 1021
TaaI	ACNGT	2 cut(s)	390, 742
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	92, 413
TasI	AATT	7 cut(s)	74, 409, 467, 564, 693, 843, 888
TatI	WGTACW	1 cut(s)	1000
TfiI	GAWTC	4 cut(s)	227, 238, 1034, 1045
Tru1I	TTAA	6 cut(s)	353, 431, 497, 644, 795, 828
Tru9I	TTAA	6 cut(s)	353, 431, 497, 644, 795, 828
TscAI	CASTG	2 cut(s)	374, 1044
TseFI	GTSAC	3 cut(s)	282, 679, 861
TseI	GCWGC	2 cut(s)	437, 599
Tsp45I	GTSAC	3 cut(s)	282, 679, 861
TspRI	CASTG	2 cut(s)	374, 1044
VneI	GTGCAC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	1 cut(s)	141
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.