Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007305

Physical Location & Seq

Genomic Coordinates Reverse (-)

22389705 .. 22390842

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCAAACTGCTTCATATCTCCACCCATTCTCTTATTGCTCTTACAGAAGAGGCTCTGTAAAACCAGATGGGTGGAATAAATTACAAATCCCGTATTCGAGTCAGCTTGCTGAGAAAGTTGCGCTCATTGGCAGGCCTCAGACATGTAAGCTTCTCAGGCCTTTGAAAGAGACCAGATTGTGTGCAGTTCCCAACGCAGATGATGGCCACCCTCCTGTCTCTGTGTTGGAAGATTCCAATACGAATCACGCACCCACTTCGGAAGGGGAGACATTGTTCAGCAAATGGTCGCCTCCCAGGCATCTGTGGAGGGGATTGTCAGCTTTTATCTTGGCAGGTCAGGTCATCATTAGAACTTTAAAGGGTAAAGTGCACTGGAAAAATACACTCCAACAGTTGAGGAGAGTTGGACCAAATTCGGCTGGGGTCTGCCTCTTAACTGCTGCATTTGTTGGCATGGCCTTCACCATCCAATTTGTTAGGGAATTTACTAGATTAGGGTTAAGCAGAGCTGTTGGTGGGGTATTGGCCCTGGCTTTCTCAAGGGAGCTGAGTCCTGTAGTTACATCAATTGTGGTTGCAGGGCGTATTGGAAGTGCATTTGCTGCAGAGTTAGGAACAATGCAGGTTTCTGAGCAAACTGACACATTAAGAGTTCTTGGAGCCAACCCTGTTGATTATCTTGTGACACCGAGGGTAATTGCTACCTGTATTGCGCTACCATTTCTGACCCTGATGTGTTTCACAGTAGGGATGGCATCCAGCGCCCTCCTTGCTGATGGTATTTATGGTGTTAGCATTAACATTATTTTGGAGTCAGCTCGCAGAGCTCTTAAACCGTGGGATATAATTAGTGCAATGATCAAGTCACAGGCTTTTGGTGCTATCATATCAATTGTTAGTTGTGCTTGGGGTGTTACCACCATGGGAGGAGCCAAAGGTGTTGGGGAGTCAACGACTTCGGCTGTGGTTATCTCTCTTGTTGGGATCTTTATTGCAGATTTTGTACTCTCTTATTTTTTCTTCCAAGGAGTTGGAGATTCACTGAAGAATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaE PUNUT

Protein Analysis

353

Amino Acids

37.84

Weight (kDa)

9.48

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MlaE	PF02405	130 - 339	1.2e-68	Permease MlaE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19800 AT1G19800 AT1G19800 AT1G19800 AT1G19800 AT1G19800
fragaria_vesca	FvH4_3g16560
malus_domestica	MD05G1209200.v1.1 MD10G1195600.v1.1
prunus_persica	Prupe.4G148300_v2.0.a1 Prupe.4G148300_v2.0.a1
pyrus_communis	pycom05g19530
rosa_chinensis	RchiOBHm_Chr5g0027591
rosa_laevigata	RLG00000033031
rosa_multiflora	Rmu_sc0001647.1_g000008 Rmu_sc0011056.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051940
rosa_rugosa	Rorug05G0099900 Rorug05G0099900 Rorug05G0100000
rosa_samantha	Rh5AG194300 Rh5BG192400 Rh5CG212400 Rh5DG194100
rosa_wichuraiana	Rw5G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	326, 616
AclWI	GGATC	1 cut(s)	995
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	415, 485
AfaI	GTAC	1 cut(s)	1008
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	296, 531
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	7 cut(s)	106, 151, 323, 512, 550, 821, 830
AluI	AGCT	7 cut(s)	106, 151, 323, 512, 550, 821, 830
Alw21I	GWGCWC	2 cut(s)	375, 832
Alw26I	GTCTC	3 cut(s)	164, 223, 263
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	995
AoxI	GGCC	5 cut(s)	134, 158, 205, 459, 528
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	443, 605
ApoI	RAATTY	2 cut(s)	415, 485
AspLEI	GCGC	3 cut(s)	124, 718, 767
AspS9I	GGNCC	2 cut(s)	410, 529
AsuHPI	GGTGA	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	832
Bbv12I	GWGCWC	2 cut(s)	375, 832
BbvI	GCAGC	2 cut(s)	430, 592
BccI	CCATC	5 cut(s)	62, 197, 476, 748, 773
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	2 cut(s)	298, 533
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	3 cut(s)	164, 223, 263
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	3 cut(s)	558, 606, 1055
BfoI	RGCGCY	1 cut(s)	768
BfuAI	ACCTGC	2 cut(s)	326, 616
BglI	GCCNNNNNGGC	1 cut(s)	298
BisI	GCNGC	2 cut(s)	444, 606
BlsI	GCNGC	2 cut(s)	445, 607
Bme1390I	CCNGG	2 cut(s)	298, 533
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	410, 529
BmiI	GGNNCC	2 cut(s)	664, 934
BmrFI	CCNGG	2 cut(s)	298, 533
BmsI	GCATC	2 cut(s)	310, 767
BpuEI	CTTGAG	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	6 cut(s)	296, 531, 692, 839, 924, 1027
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	2 cut(s)	298, 533
BseDI	CCNNGG	6 cut(s)	296, 531, 692, 839, 924, 1027
BseGI	GGATG	3 cut(s)	468, 758, 759
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	5 cut(s)	102, 152, 169, 542, 624
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	2 cut(s)	415, 945
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	430, 592
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	5 cut(s)	136, 160, 207, 461, 530
BsiHKAI	GWGCWC	2 cut(s)	375, 832
BsmAI	GTCTC	3 cut(s)	164, 223, 263
BsnI	GGCC	5 cut(s)	136, 160, 207, 461, 530
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	375, 832
Bsp143I	GATC	2 cut(s)	861, 987
Bsp19I	CCATGG	1 cut(s)	924
BspANI	GGCC	5 cut(s)	136, 160, 207, 461, 530
BspCNI	CTCAG	5 cut(s)	103, 151, 168, 543, 625
BspLI	GGNNCC	2 cut(s)	664, 934
BspMAI	CTGCAG	1 cut(s)	610
BspMI	ACCTGC	2 cut(s)	326, 616
BspPI	GGATC	1 cut(s)	995
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	864
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	6 cut(s)	296, 531, 692, 839, 924, 1027
BssMI	GATC	2 cut(s)	861, 987
BssT1I	CCWWGG	2 cut(s)	924, 1027
Bst2UI	CCWGG	2 cut(s)	298, 533
Bst4CI	ACNGT	3 cut(s)	396, 748, 840
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	3 cut(s)	108, 134, 823
BstDEI	CTNAG	5 cut(s)	111, 138, 155, 551, 633
BstDSI	CCRYGG	2 cut(s)	839, 924
BstF5I	GGATG	3 cut(s)	468, 758, 759
BstH2I	RGCGCY	1 cut(s)	768
BstHHI	GCGC	3 cut(s)	124, 718, 767
BstKTI	GATC	2 cut(s)	864, 990
BstMAI	GTCTC	3 cut(s)	164, 223, 263
BstMBI	GATC	2 cut(s)	861, 987
BstMWI	GCNNNNNNNGC	7 cut(s)	157, 298, 605, 764, 773, 827, 881
BstNI	CCWGG	2 cut(s)	298, 533
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	296, 531
BstSFI	CTRYAG	3 cut(s)	558, 606, 1055
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	430, 592
BstX2I	RGATCY	1 cut(s)	987
BstXI	CCANNNNNNTGG	2 cut(s)	72, 1034
BstYI	RGATCY	1 cut(s)	987
BsuRI	GGCC	5 cut(s)	136, 160, 207, 461, 530
BtgI	CCRYGG	2 cut(s)	839, 924
BtsCI	GGATG	3 cut(s)	468, 758, 759
BtsIMutI	CAGTG	2 cut(s)	373, 1043
BveI	ACCTGC	2 cut(s)	326, 616
Cac8I	GCNNGC	3 cut(s)	108, 134, 823
CfoI	GCGC	3 cut(s)	124, 718, 767
Cfr13I	GGNCC	2 cut(s)	410, 529
Csp6I	GTAC	1 cut(s)	1007
CviAII	CATG	3 cut(s)	144, 457, 925
CviQI	GTAC	1 cut(s)	1007
DdeI	CTNAG	5 cut(s)	111, 138, 155, 551, 633
DpnI	GATC	2 cut(s)	863, 989
DpnII	GATC	2 cut(s)	861, 987
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	830
Eco130I	CCWWGG	2 cut(s)	924, 1027
Eco147I	AGGCCT	2 cut(s)	136, 160
Eco24I	GRGCYC	1 cut(s)	832
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	830
EcoICRI	GAGCTC	1 cut(s)	830
EcoRII	CCWGG	2 cut(s)	296, 531
EcoT14I	CCWWGG	2 cut(s)	924, 1027
EcoT38I	GRGCYC	1 cut(s)	832
ErhI	CCWWGG	2 cut(s)	924, 1027
FaeI	CATG	3 cut(s)	147, 460, 928
FaiI	YATR	8 cut(s)	16, 145, 458, 789, 848, 890, 926, 1057
FatI	CATG	3 cut(s)	143, 456, 924
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	444, 606
FokI	GGATG	3 cut(s)	455, 745, 766
FriOI	GRGCYC	1 cut(s)	832
Fsp4HI	GCNGC	2 cut(s)	444, 606
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	3 cut(s)	123, 717, 766
GluI	GCNGC	2 cut(s)	444, 606
GsaI	CCCAGC	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	768
HaeIII	GGCC	5 cut(s)	136, 160, 207, 461, 530
HhaI	GCGC	3 cut(s)	124, 718, 767
Hin1II	CATG	3 cut(s)	147, 460, 928
Hin6I	GCGC	3 cut(s)	122, 716, 765
HinP1I	GCGC	3 cut(s)	122, 716, 765
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	8 cut(s)	100, 233, 244, 553, 815, 950, 1040, 1051
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	2 cut(s)	373, 954
Hpy188I	TCNGA	4 cut(s)	141, 262, 634, 729
Hpy8I	GTNNAC	2 cut(s)	373, 954
HpyAV	CCTTC	2 cut(s)	257, 472
HpyCH4III	ACNGT	3 cut(s)	396, 748, 840
HpyF10VI	GCNNNNNNNGC	7 cut(s)	157, 298, 605, 764, 773, 827, 881
HpyF3I	CTNAG	5 cut(s)	111, 138, 155, 551, 633
Hsp92II	CATG	3 cut(s)	147, 460, 928
HspAI	GCGC	3 cut(s)	122, 716, 765
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	2 cut(s)	861, 987
LmnI	GCTCC	3 cut(s)	547, 662, 932
Lsp1109I	GCAGC	2 cut(s)	430, 592
LweI	GCATC	2 cut(s)	310, 767
MaeI	CTAG	1 cut(s)	492
MaeIII	GTNAC	4 cut(s)	562, 685, 867, 916
MalI	GATC	2 cut(s)	863, 989
MboI	GATC	2 cut(s)	861, 987
MboII	GAAGA	3 cut(s)	60, 242, 1015
MfeI	CAATTG	2 cut(s)	570, 894
MflI	RGATCY	1 cut(s)	987
MhlI	GDGCHC	2 cut(s)	375, 832
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	8 cut(s)	80, 415, 473, 485, 570, 699, 849, 894
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	4 cut(s)	109, 562, 824, 959
MmeI	TCCRAC	4 cut(s)	207, 388, 415, 1015
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	6 cut(s)	359, 437, 503, 650, 801, 834
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	298, 533
MunI	CAATTG	2 cut(s)	570, 894
MvaI	CCWGG	2 cut(s)	298, 533
MwoI	GCNNNNNNNGC	7 cut(s)	157, 298, 605, 764, 773, 827, 881
NcoI	CCATGG	1 cut(s)	924
NdeII	GATC	2 cut(s)	861, 987
NlaIII	CATG	3 cut(s)	147, 460, 928
NlaIV	GGNNCC	2 cut(s)	664, 934
NmuCI	GTSAC	2 cut(s)	685, 867
NspI	RCATGY	1 cut(s)	147
PceI	AGGCCT	2 cut(s)	136, 160
PciI	ACATGT	1 cut(s)	143
PfeI	GAWTC	4 cut(s)	233, 244, 1040, 1051
PkrI	GCNGC	2 cut(s)	445, 607
PleI	GAGTC	4 cut(s)	108, 561, 823, 958
PpsI	GAGTC	4 cut(s)	108, 561, 823, 958
PscI	ACATGT	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	832
Psp6I	CCWGG	2 cut(s)	296, 531
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	296, 531
PspN4I	GGNNCC	2 cut(s)	664, 934
PspPI	GGNCC	2 cut(s)	410, 529
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	987
RsaI	GTAC	1 cut(s)	1008
RsaNI	GTAC	1 cut(s)	1007
SacI	GAGCTC	1 cut(s)	832
SaqAI	TTAA	6 cut(s)	359, 437, 503, 650, 801, 834
SatI	GCNGC	2 cut(s)	444, 606
Sau3AI	GATC	2 cut(s)	861, 987
Sau96I	GGNCC	2 cut(s)	410, 529
SchI	GAGTC	4 cut(s)	109, 562, 824, 959
ScrFI	CCNGG	2 cut(s)	298, 533
SduI	GDGCHC	2 cut(s)	375, 832
SfaNI	GCATC	2 cut(s)	310, 767
SfcI	CTRYAG	3 cut(s)	558, 606, 1055
SinI	GGWCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	8 cut(s)	80, 415, 473, 485, 570, 699, 849, 894
SseBI	AGGCCT	2 cut(s)	136, 160
SspMI	CTAG	1 cut(s)	492
SstI	GAGCTC	1 cut(s)	832
StuI	AGGCCT	2 cut(s)	136, 160
StyD4I	CCNGG	2 cut(s)	296, 531
StyI	CCWWGG	2 cut(s)	924, 1027
TaaI	ACNGT	3 cut(s)	396, 748, 840
TaqI	TCGA	1 cut(s)	98
TasI	AATT	8 cut(s)	80, 415, 473, 485, 570, 699, 849, 894
TatI	WGTACW	1 cut(s)	1006
TfiI	GAWTC	4 cut(s)	233, 244, 1040, 1051
Tru1I	TTAA	6 cut(s)	359, 437, 503, 650, 801, 834
Tru9I	TTAA	6 cut(s)	359, 437, 503, 650, 801, 834
TscAI	CASTG	2 cut(s)	380, 1050
TseFI	GTSAC	2 cut(s)	685, 867
TseI	GCWGC	2 cut(s)	443, 605
Tsp45I	GTSAC	2 cut(s)	685, 867
TspRI	CASTG	2 cut(s)	380, 1050
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	2 cut(s)	415, 485
XceI	RCATGY	1 cut(s)	147
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.