Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007305

Physical Location & Seq

Genomic Coordinates Forward (+)

72714001 .. 72716781

Gene Structure 2781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCAAACTGCTTCATATCTCCACCCATTCTCTTATTGCTCTTACAGAGGCTCTGTAAAACCAGATGGGTGGAATAAATTACAAATCCCGTATTCGAGTCAGCTTGCTGAGAAAGTTGCGCTCATTGGCAGGCCTCAGACATGTAAGCTTCTCAGGCCCTTGAAAGAGACCAGATTGTGTGCAGTTCCCAACGCAGATGATGGCCACCCTCCTGTCTCTGTGTTGGAAGATTCCAATACGAATCACGCACCCACTTCAGAAGGGGAGACATTGTTCAGCAAATGGTCACCTCCTAGGCATCTGTGGAGGGGATTGTCAGCTTTTATCTTGGCAGGTCAGGTCATCATTAGAACTTTAAAGGGTAAAGTGCACTGGAAAAATACACTCCAACAGTTGAGGAGAGTTGGACCAAATTCGGCTGGGGTCTGCCTCTTAACTGCAGCATTTGTTGGCATGGCCTTCACCATCCAATTTGTTAGGGAATTTACTAGATTAGGGTTAAGCAGAGCTGTTGGTGGGGTATTGGCCCTGGCTTTCGCAAGGGAGTTGAGTCCTGTAGTTACATCAATTGTGGTTGCAGGGCGTATTGGAAGTGCATTTGCTGCAGAGTTAGGAACAATGCAGGTTTCTGAGCAAACTGACACATTAAGAGTTCTTGGAGCAAACCCTGTTGATTATCTTGTGACACCGAGGGTAATTGCTACCTGTACTGCTCTACCATTTCTGACCCTGATGTGTTTCACAGTAGGGATGGCATCCAGCGCCCTCCTTGCTGATGGTATTTATGGTGTTAGCATTAACATTATTTTGGAGTCAGCTCGCAGAGCTCTTAAACCTTGGGATATAATTAGTGCAATGATCAAGTCACAGGCTTTTGGTGCTATCATATCAATTGTTAGTTGTGCTTGGGGAGTTACCACCATGGGAGGAGCCAAAGGTGTTGGGGAGTCAACAACTTCGGCTGTGGTTATCTCTCTTGTTGGGATCTTTATTGCAGATTTTGTACTCTCTTATTTTTTCTTCCAAGGAGTTGGAGATTCACTGAAGAATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaE PUNUT

Protein Analysis

351

Amino Acids

37.66

Weight (kDa)

9.39

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MlaE	PF02405	129 - 338	2.4e-68	Permease MlaE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19800 AT1G19800 AT1G19800 AT1G19800 AT1G19800 AT1G19800
fragaria_vesca	FvH4_3g16560
malus_domestica	MD05G1209200.v1.1 MD10G1195600.v1.1
prunus_persica	Prupe.4G148300_v2.0.a1 Prupe.4G148300_v2.0.a1
pyrus_communis	pycom05g19530
rosa_chinensis	RchiOBHm_Chr5g0027591
rosa_laevigata	RLG00000033031
rosa_multiflora	Rmu_sc0001647.1_g000008 Rmu_sc0011056.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051940
rosa_rugosa	Rorug05G0099900 Rorug05G0099900 Rorug05G0100000
rosa_samantha	Rh5AG194300 Rh5BG192400 Rh5CG212400 Rh5DG194100
rosa_wichuraiana	Rw5G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	323, 613
AclWI	GGATC	1 cut(s)	992
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	412, 482
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	709, 1005
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	528
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	6 cut(s)	103, 148, 320, 509, 818, 827
AluI	AGCT	6 cut(s)	103, 148, 320, 509, 818, 827
Alw21I	GWGCWC	2 cut(s)	372, 829
Alw26I	GTCTC	3 cut(s)	161, 220, 260
Alw44I	GTGCAC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	992
AoxI	GGCC	5 cut(s)	131, 155, 202, 456, 525
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	440, 602
ApoI	RAATTY	2 cut(s)	412, 482
AspA2I	CCTAGG	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	121, 764
AspS9I	GGNCC	3 cut(s)	156, 407, 526
AsuHPI	GGTGA	2 cut(s)	279, 454
AvaII	GGWCC	1 cut(s)	407
AvrII	CCTAGG	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	829
Bbv12I	GWGCWC	2 cut(s)	372, 829
BbvI	GCAGC	2 cut(s)	452, 589
BccI	CCATC	5 cut(s)	59, 194, 473, 745, 770
BciT130I	CCWGG	1 cut(s)	530
BclI	TGATCA	1 cut(s)	858
BcoDI	GTCTC	3 cut(s)	161, 220, 260
BfaI	CTAG	2 cut(s)	294, 489
BfmI	CTRYAG	4 cut(s)	438, 555, 603, 1052
BfoI	RGCGCY	1 cut(s)	765
BfuAI	ACCTGC	2 cut(s)	323, 613
BisI	GCNGC	2 cut(s)	441, 603
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	2 cut(s)	442, 604
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	3 cut(s)	156, 407, 526
BmiI	GGNNCC	1 cut(s)	931
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	2 cut(s)	307, 764
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	6 cut(s)	293, 528, 689, 836, 921, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	6 cut(s)	293, 528, 689, 836, 921, 1024
BseGI	GGATG	3 cut(s)	465, 755, 756
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	4 cut(s)	99, 149, 166, 621
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	412, 942
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	452, 589
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	5 cut(s)	133, 157, 204, 458, 527
BsiHKAI	GWGCWC	2 cut(s)	372, 829
BsmAI	GTCTC	3 cut(s)	161, 220, 260
BsnI	GGCC	5 cut(s)	133, 157, 204, 458, 527
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	372, 829
Bsp143I	GATC	2 cut(s)	858, 984
Bsp19I	CCATGG	1 cut(s)	921
BspANI	GGCC	5 cut(s)	133, 157, 204, 458, 527
BspCNI	CTCAG	4 cut(s)	100, 148, 165, 622
BspLI	GGNNCC	1 cut(s)	931
BspMAI	CTGCAG	2 cut(s)	442, 607
BspMI	ACCTGC	2 cut(s)	323, 613
BspPI	GGATC	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	6 cut(s)	293, 528, 689, 836, 921, 1024
BssMI	GATC	2 cut(s)	858, 984
BssT1I	CCWWGG	4 cut(s)	293, 836, 921, 1024
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	393, 745
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstC8I	GCNNGC	3 cut(s)	105, 131, 820
BstDEI	CTNAG	4 cut(s)	108, 135, 152, 630
BstDSI	CCRYGG	1 cut(s)	921
BstEII	GGTNACC	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	465, 755, 756
BstH2I	RGCGCY	1 cut(s)	765
BstHHI	GCGC	2 cut(s)	121, 764
BstKTI	GATC	2 cut(s)	861, 987
BstMAI	GTCTC	3 cut(s)	161, 220, 260
BstMBI	GATC	2 cut(s)	858, 984
BstMWI	GCNNNNNNNGC	6 cut(s)	154, 602, 761, 770, 824, 878
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	144
BstPI	GGTNACC	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	4 cut(s)	438, 555, 603, 1052
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	452, 589
BstX2I	RGATCY	1 cut(s)	984
BstXI	CCANNNNNNTGG	2 cut(s)	69, 1031
BstYI	RGATCY	1 cut(s)	984
BsuRI	GGCC	5 cut(s)	133, 157, 204, 458, 527
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	3 cut(s)	465, 755, 756
BtsIMutI	CAGTG	2 cut(s)	370, 1040
BveI	ACCTGC	2 cut(s)	323, 613
Cac8I	GCNNGC	3 cut(s)	105, 131, 820
CfoI	GCGC	2 cut(s)	121, 764
Cfr13I	GGNCC	3 cut(s)	156, 407, 526
Csp6I	GTAC	2 cut(s)	708, 1004
CviAII	CATG	3 cut(s)	141, 454, 922
CviQI	GTAC	2 cut(s)	708, 1004
DdeI	CTNAG	4 cut(s)	108, 135, 152, 630
DpnI	GATC	2 cut(s)	860, 986
DpnII	GATC	2 cut(s)	858, 984
DraI	TTTAAA	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	827
Eco130I	CCWWGG	4 cut(s)	293, 836, 921, 1024
Eco147I	AGGCCT	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	829
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	156
EcoO65I	GGTNACC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	528
EcoT14I	CCWWGG	4 cut(s)	293, 836, 921, 1024
EcoT38I	GRGCYC	1 cut(s)	829
ErhI	CCWWGG	4 cut(s)	293, 836, 921, 1024
FaeI	CATG	3 cut(s)	144, 457, 925
FaiI	YATR	8 cut(s)	16, 142, 455, 786, 845, 887, 923, 1054
FatI	CATG	3 cut(s)	140, 453, 921
FbaI	TGATCA	1 cut(s)	858
Fnu4HI	GCNGC	2 cut(s)	441, 603
FokI	GGATG	3 cut(s)	452, 742, 763
FriOI	GRGCYC	1 cut(s)	829
Fsp4HI	GCNGC	2 cut(s)	441, 603
FspBI	CTAG	2 cut(s)	294, 489
GlaI	GCGC	2 cut(s)	120, 763
GluI	GCNGC	2 cut(s)	441, 603
GsaI	CCCAGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	765
HaeIII	GGCC	5 cut(s)	133, 157, 204, 458, 527
HhaI	GCGC	2 cut(s)	121, 764
Hin1II	CATG	3 cut(s)	144, 457, 925
Hin6I	GCGC	2 cut(s)	119, 762
HinP1I	GCGC	2 cut(s)	119, 762
HincII	GTYRAC	1 cut(s)	951
HindII	GTYRAC	1 cut(s)	951
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	8 cut(s)	97, 230, 241, 550, 812, 947, 1037, 1048
HphI	GGTGA	2 cut(s)	279, 454
Hpy166II	GTNNAC	2 cut(s)	370, 951
Hpy188I	TCNGA	4 cut(s)	138, 259, 631, 726
Hpy8I	GTNNAC	2 cut(s)	370, 951
HpyAV	CCTTC	2 cut(s)	254, 469
HpyCH4III	ACNGT	2 cut(s)	393, 745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	154, 602, 761, 770, 824, 878
HpyF3I	CTNAG	4 cut(s)	108, 135, 152, 630
Hsp92II	CATG	3 cut(s)	144, 457, 925
HspAI	GCGC	2 cut(s)	119, 762
Ksp22I	TGATCA	1 cut(s)	858
Kzo9I	GATC	2 cut(s)	858, 984
LmnI	GCTCC	2 cut(s)	659, 929
Lsp1109I	GCAGC	2 cut(s)	452, 589
LweI	GCATC	2 cut(s)	307, 764
MaeI	CTAG	2 cut(s)	294, 489
MaeIII	GTNAC	5 cut(s)	285, 559, 682, 864, 913
MalI	GATC	2 cut(s)	860, 986
MboI	GATC	2 cut(s)	858, 984
MboII	GAAGA	2 cut(s)	239, 1012
MfeI	CAATTG	2 cut(s)	567, 891
MflI	RGATCY	1 cut(s)	984
MhlI	GDGCHC	2 cut(s)	372, 829
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	8 cut(s)	77, 412, 470, 482, 567, 696, 846, 891
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	4 cut(s)	106, 559, 821, 956
MmeI	TCCRAC	4 cut(s)	204, 385, 412, 1012
Mox20I	TGGCCA	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	6 cut(s)	356, 434, 500, 647, 798, 831
Msp20I	TGGCCA	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	2 cut(s)	567, 891
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	6 cut(s)	154, 602, 761, 770, 824, 878
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	2 cut(s)	858, 984
NlaIII	CATG	3 cut(s)	144, 457, 925
NlaIV	GGNNCC	1 cut(s)	931
NmuCI	GTSAC	3 cut(s)	285, 682, 864
NspI	RCATGY	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	133
PciI	ACATGT	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	230, 241, 1037, 1048
PkrI	GCNGC	2 cut(s)	442, 604
PleI	GAGTC	4 cut(s)	105, 558, 820, 955
PpsI	GAGTC	4 cut(s)	105, 558, 820, 955
PscI	ACATGT	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	829
Psp6I	CCWGG	1 cut(s)	528
PspEI	GGTNACC	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	931
PspPI	GGNCC	3 cut(s)	156, 407, 526
PstI	CTGCAG	2 cut(s)	442, 607
PsuI	RGATCY	1 cut(s)	984
RsaI	GTAC	2 cut(s)	709, 1005
RsaNI	GTAC	2 cut(s)	708, 1004
SacI	GAGCTC	1 cut(s)	829
SaqAI	TTAA	6 cut(s)	356, 434, 500, 647, 798, 831
SatI	GCNGC	2 cut(s)	441, 603
Sau3AI	GATC	2 cut(s)	858, 984
Sau96I	GGNCC	3 cut(s)	156, 407, 526
SchI	GAGTC	4 cut(s)	106, 559, 821, 956
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	372, 829
SfaNI	GCATC	2 cut(s)	307, 764
SfcI	CTRYAG	4 cut(s)	438, 555, 603, 1052
SinI	GGWCC	1 cut(s)	407
Sse9I	AATT	8 cut(s)	77, 412, 470, 482, 567, 696, 846, 891
SseBI	AGGCCT	1 cut(s)	133
SspMI	CTAG	2 cut(s)	294, 489
SstI	GAGCTC	1 cut(s)	829
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	4 cut(s)	293, 836, 921, 1024
TaaI	ACNGT	2 cut(s)	393, 745
TaqI	TCGA	1 cut(s)	95
TasI	AATT	8 cut(s)	77, 412, 470, 482, 567, 696, 846, 891
TatI	WGTACW	2 cut(s)	707, 1003
TfiI	GAWTC	4 cut(s)	230, 241, 1037, 1048
Tru1I	TTAA	6 cut(s)	356, 434, 500, 647, 798, 831
Tru9I	TTAA	6 cut(s)	356, 434, 500, 647, 798, 831
TscAI	CASTG	2 cut(s)	377, 1047
TseFI	GTSAC	3 cut(s)	285, 682, 864
TseI	GCWGC	2 cut(s)	440, 602
Tsp45I	GTSAC	3 cut(s)	285, 682, 864
TspRI	CASTG	2 cut(s)	377, 1047
VneI	GTGCAC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	412, 482
XceI	RCATGY	1 cut(s)	144
XmaJI	CCTAGG	1 cut(s)	293
XspI	CTAG	2 cut(s)	294, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.