Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009240

Physical Location & Seq

Genomic Coordinates Reverse (-)

11208049 .. 11214787

Gene Structure 6739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCTGGTAGAAATCGTGGACCGCCTCATGCTGCGCTACCACCTCCCATGCATGATGCCCCGTATGGAAGAGGACATGGGCTGGTGCCCCATCCTGTGTTGCTTGAGGAAATGAGAGAATCCCAGCACGGTATGGGTCCCAGGTCGCTTCCTCCTCACCCTGCGATCATTGAGGAACATCTTGCGGCGCAGCTTCAAGATATTCAGGGTCTTTTGGTTGATAACCAGAGGCTGGCTGCCACTCATGTTGCTCTTAAGCAGGAATTGGAAGCTGCCCAGTTTGAGTTGCAACGCATGGCTTACCATGTTGATTCACTGCGGTCGGACAAGGATGTGCAGATGAGGGAATTGTATGACAAGTCTGTGCGTTTGGAAGTGGATCTTCGTGGGGTTGAGGCTATGCGGGCTGAGCTTCTTCAGGTTCGCGCTGATATCAAGGAACTCACTGTTGCGAGGCAAGAGCTCTCTGGCCAGGCGCAAGCGATGACCCAAGATTTGGCTAGAATCAATGCTGACTTGCAACAGGCACCGGCTTTAAGAGCAGAAATTGAATCTATGAAACAAGAACTGCAGCGTGCTAGAGCTGCCATTGAGTATGAAAAGAAGGGGTATGCAGAGAATTATGAGCATGGTCAGGTGATGGAGAAGAACTTGATCTCAATGGCTAGGGAGCTGGAGAAACTTCGTGCAGAAATTGCTAATACTGACAAGAGGGCACGTGCTTCAGCTGCTGTTGGAAATCCCAGTGGAGGTTACAATGCAAATTATGGTAATCCTGAAGCAGGATATGCAGGAAATCCTTATCCTGCCACCTACGGCATGAACCCTGTACAGAATGCTGCTGAAAATTTTCCTCAGTATCCTATGCCCGGTGCTTGGGGTGCATACGACATGCAGCGAGCTCAGGGACACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

33.91

Weight (kDa)

6.02

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14750
fragaria_vesca	FvH4_3g17610 FvH4_3g17610 FvH4_3g17610
malus_domestica	MD03G1250800.v1.1 MD11G1271000.v1.1
prunus_persica	Prupe.4G155500_v2.0.a1
pyrus_communis	pycom03g19850 pycom11g23970
rosa_chinensis	RchiOBHm_Chr5g0029311
rosa_laevigata	RLG00000033152
rosa_multiflora	Rmu_co8357187.1_g000001 Rmu_sc0004205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050700
rosa_rugosa	Rorug05G0113000 Rorug05G0113100 Rorug05G0113200
rosa_samantha	Rh5AG205300 Rh5BG203800 Rh5CG225200 Rh5DG207400
rosa_wichuraiana	Rw5G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	85, 526
AccB7I	CCANNNNNTGG	2 cut(s)	232, 496
AccII	CGCG	1 cut(s)	426
AciI	CCGC	4 cut(s)	23, 185, 319, 403
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	847
AcuI	CTGAAG	3 cut(s)	401, 708, 798
AcvI	CACGTG	1 cut(s)	719
AfaI	GTAC	1 cut(s)	831
AfiI	CCNNNNNNNGG	6 cut(s)	232, 496, 749, 782, 869, 876
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	197, 551
AjnI	CCWGG	2 cut(s)	140, 471
AluBI	AGCT	8 cut(s)	193, 272, 412, 463, 584, 673, 728, 902
AluI	AGCT	8 cut(s)	193, 272, 412, 463, 584, 673, 728, 902
Alw21I	GWGCWC	2 cut(s)	465, 904
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	2 cut(s)	232, 731
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	9 cut(s)	32, 190, 236, 272, 571, 584, 728, 839, 895
ApoI	RAATTY	1 cut(s)	847
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	4 cut(s)	37, 190, 428, 478
AspS9I	GGNCC	2 cut(s)	20, 137
AsuC2I	CCSGG	1 cut(s)	870
AsuHPI	GGTGA	2 cut(s)	149, 649
AvaII	GGWCC	2 cut(s)	20, 137
BaeGI	GKGCMC	2 cut(s)	90, 718
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	2 cut(s)	85, 526
BanII	GRGCYC	2 cut(s)	465, 904
BbrPI	CACGTG	1 cut(s)	719
Bbv12I	GWGCWC	2 cut(s)	465, 904
BbvI	GCAGC	9 cut(s)	19, 202, 223, 259, 571, 583, 715, 826, 907
BccI	CCATC	2 cut(s)	99, 634
BceAI	ACGGC	1 cut(s)	832
BciT130I	CCWGG	2 cut(s)	142, 473
BciVI	GTATCC	1 cut(s)	870
BcnI	CCSGG	1 cut(s)	870
BfaI	CTAG	3 cut(s)	501, 579, 666
BfmI	CTRYAG	1 cut(s)	569
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	870
BlpI	GCTNAGC	1 cut(s)	408
Bme1390I	CCNGG	3 cut(s)	142, 473, 870
Bme18I	GGWCC	2 cut(s)	20, 137
BmgT120I	GGNCC	2 cut(s)	20, 137
BmiI	GGNNCC	4 cut(s)	87, 138, 139, 528
BmrFI	CCNGG	3 cut(s)	142, 473, 870
BmrI	ACTGGG	2 cut(s)	271, 738
BmsI	GCATC	1 cut(s)	46
BmuI	ACTGGG	2 cut(s)	271, 738
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	903
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	870
BsaAI	YACGTR	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	6 cut(s)	232, 496, 749, 782, 869, 876
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	277, 744
BseBI	CCWGG	2 cut(s)	142, 473
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	91, 337
BseLI	CCNNNNNNNGG	6 cut(s)	232, 496, 749, 782, 869, 876
BseMII	CTCAG	3 cut(s)	399, 869, 917
BseNI	ACTGG	2 cut(s)	277, 744
BseRI	GAGGAG	1 cut(s)	144
BseSI	GKGCMC	2 cut(s)	90, 718
BseXI	GCAGC	9 cut(s)	19, 202, 223, 259, 571, 583, 715, 826, 907
BseYI	CCCAGC	1 cut(s)	123
BsgI	GTGCAG	2 cut(s)	356, 708
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	471
BshNI	GGYRCC	2 cut(s)	85, 526
BsiEI	CGRYCG	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	465, 904
BsiSI	CCGG	2 cut(s)	530, 870
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	6 cut(s)	232, 496, 749, 782, 869, 876
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	1 cut(s)	471
Bsp1286I	GDGCHC	4 cut(s)	90, 465, 718, 904
Bsp1407I	TGTACA	1 cut(s)	829
Bsp143I	GATC	3 cut(s)	165, 379, 654
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	4 cut(s)	23, 185, 319, 403
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	3 cut(s)	400, 868, 916
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	4 cut(s)	87, 138, 139, 528
BspMAI	CTGCAG	1 cut(s)	573
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	2 cut(s)	85, 526
BspTI	CTTAAG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	529
BsrGI	TGTACA	1 cut(s)	829
BsrI	ACTGG	2 cut(s)	277, 744
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	3 cut(s)	165, 379, 654
Bst2UI	CCWGG	2 cut(s)	142, 473
Bst4CI	ACNGT	2 cut(s)	131, 448
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	2 cut(s)	695, 788
BstAUI	TGTACA	1 cut(s)	829
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	5 cut(s)	234, 405, 480, 576, 900
BstDEI	CTNAG	3 cut(s)	408, 855, 903
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	91, 337
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	4 cut(s)	37, 190, 428, 478
BstKTI	GATC	3 cut(s)	168, 382, 657
BstMBI	GATC	3 cut(s)	165, 379, 654
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	8 cut(s)	404, 409, 539, 584, 695, 728, 788, 881
BstNI	CCWGG	2 cut(s)	142, 473
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	3 cut(s)	140, 471, 868
BstSFI	CTRYAG	1 cut(s)	569
BstSLI	GKGCMC	2 cut(s)	90, 718
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	9 cut(s)	19, 202, 223, 259, 571, 583, 715, 826, 907
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	870
BsuRI	GGCC	1 cut(s)	471
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	91, 337
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	3 cut(s)	314, 444, 751
Cac8I	GCNNGC	5 cut(s)	234, 405, 480, 576, 900
CaiI	CAGNNNCTG	2 cut(s)	232, 731
CfoI	GCGC	4 cut(s)	37, 190, 428, 478
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	20, 137
Csp6I	GTAC	1 cut(s)	830
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviQI	GTAC	1 cut(s)	830
DdeI	CTNAG	3 cut(s)	408, 855, 903
DpnI	GATC	3 cut(s)	167, 381, 656
DpnII	GATC	3 cut(s)	165, 379, 654
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Ecl136II	GAGCTC	2 cut(s)	463, 902
Eco24I	GRGCYC	2 cut(s)	465, 904
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	20, 137
Eco53kI	GAGCTC	2 cut(s)	463, 902
Eco57I	CTGAAG	3 cut(s)	401, 708, 798
Eco72I	CACGTG	1 cut(s)	719
EcoICRI	GAGCTC	2 cut(s)	463, 902
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	140, 471
EcoRV	GATATC	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	465, 904
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	123
FauI	CCCGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	78, 344
FriOI	GRGCYC	2 cut(s)	465, 904
FspBI	CTAG	3 cut(s)	501, 579, 666
GlaI	GCGC	4 cut(s)	36, 189, 427, 477
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	2 cut(s)	530, 870
HhaI	GCGC	4 cut(s)	37, 190, 428, 478
Hin6I	GCGC	4 cut(s)	35, 188, 426, 476
HinP1I	GCGC	4 cut(s)	35, 188, 426, 476
HinfI	GANTC	4 cut(s)	119, 311, 504, 551
HpaII	CCGG	2 cut(s)	530, 870
HphI	GGTGA	2 cut(s)	149, 649
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	2 cut(s)	197, 776
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	2 cut(s)	131, 448
HpyCH4IV	ACGT	1 cut(s)	718
HpyF10VI	GCNNNNNNNGC	8 cut(s)	404, 409, 539, 584, 695, 728, 788, 881
HpyF3I	CTNAG	3 cut(s)	408, 855, 903
HpySE526I	ACGT	1 cut(s)	718
HspAI	GCGC	4 cut(s)	35, 188, 426, 476
KflI	GGGWCCC	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	165, 379, 654
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	9 cut(s)	19, 202, 223, 259, 571, 583, 715, 826, 907
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	3 cut(s)	501, 579, 666
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	3 cut(s)	167, 381, 656
MboI	GATC	3 cut(s)	165, 379, 654
MboII	GAAGA	4 cut(s)	81, 374, 407, 658
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	4 cut(s)	90, 465, 718, 904
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	7 cut(s)	263, 347, 546, 619, 693, 763, 847
MluNI	TGGCCA	1 cut(s)	471
MmeI	TCCRAC	2 cut(s)	303, 715
Mox20I	TGGCCA	1 cut(s)	471
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	2 cut(s)	255, 536
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	728
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	530, 870
MspR9I	CCNGG	3 cut(s)	142, 473, 870
Mva1269I	GAATGC	1 cut(s)	841
MvaI	CCWGG	2 cut(s)	142, 473
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	8 cut(s)	404, 409, 539, 584, 695, 728, 788, 881
NciI	CCSGG	1 cut(s)	870
NdeII	GATC	3 cut(s)	165, 379, 654
NlaIV	GGNNCC	4 cut(s)	87, 138, 139, 528
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	1 cut(s)	895
PctI	GAATGC	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	4 cut(s)	119, 311, 504, 551
PflMI	CCANNNNNTGG	2 cut(s)	232, 496
PmaCI	CACGTG	1 cut(s)	719
PmlI	CACGTG	1 cut(s)	719
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	137
Psp124BI	GAGCTC	2 cut(s)	465, 904
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	140, 471
PspCI	CACGTG	1 cut(s)	719
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	2 cut(s)	140, 471
PspN4I	GGNNCC	4 cut(s)	87, 138, 139, 528
PspPI	GGNCC	2 cut(s)	20, 137
PspPPI	RGGWCCY	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	573
PstNI	CAGNNNCTG	2 cut(s)	232, 731
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	831
RsaNI	GTAC	1 cut(s)	830
SacI	GAGCTC	2 cut(s)	465, 904
SaqAI	TTAA	2 cut(s)	255, 536
Sau3AI	GATC	3 cut(s)	165, 379, 654
Sau96I	GGNCC	2 cut(s)	20, 137
ScrFI	CCNGG	3 cut(s)	142, 473, 870
SduI	GDGCHC	4 cut(s)	90, 465, 718, 904
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	569
SinI	GGWCC	2 cut(s)	20, 137
SmlI	CTYRAG	2 cut(s)	104, 254
SmoI	CTYRAG	2 cut(s)	104, 254
Sse9I	AATT	7 cut(s)	263, 347, 546, 619, 693, 763, 847
SsiI	CCGC	4 cut(s)	23, 185, 319, 403
SspMI	CTAG	3 cut(s)	501, 579, 666
SstI	GAGCTC	2 cut(s)	465, 904
StyD4I	CCNGG	3 cut(s)	140, 471, 868
TaaI	ACNGT	2 cut(s)	131, 448
TaiI	ACGT	1 cut(s)	721
TasI	AATT	7 cut(s)	263, 347, 546, 619, 693, 763, 847
TatI	WGTACW	1 cut(s)	829
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	119, 311, 504, 551
Tru1I	TTAA	2 cut(s)	255, 536
Tru9I	TTAA	2 cut(s)	255, 536
TscAI	CASTG	3 cut(s)	321, 451, 751
TseI	GCWGC	9 cut(s)	32, 190, 236, 272, 571, 584, 728, 839, 895
TspDTI	ATGAA	3 cut(s)	572, 612, 836
TspRI	CASTG	3 cut(s)	321, 451, 751
Van91I	CCANNNNNTGG	2 cut(s)	232, 496
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	20, 137
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	1 cut(s)	847
XceI	RCATGY	1 cut(s)	895
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	3 cut(s)	501, 579, 666
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.