Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009240

Physical Location & Seq

Genomic Coordinates Reverse (-)

23055968 .. 23059908

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG203800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCTGGAAGAAATCGTGGACCACCTCATGCTGGACTACCTCCTCCCATGCATGAAGTGCCGTATGGAAGAGGACATGGGCCGATGCCCCATCCTGCATTACTTGAGGAAATGAGAGAATCCCAGCATGGTATGGGTCCCAGATCACTTCCCCCTCACCCTGCGATAATTGAGGAGCATCTCGCCGCCCAGCTTCAAGATATTCAAGGTCTTCTTGTTGATAACCAGAGGCTGGCTGCGACTCATGTTGCCCTTAAGCAGGAATTGGAAGCTGCCCAATTTGAGTTGCAACGCATGGCTTACCATGTTGATTCAATGCGGTCAGACAAGGATGTTCAAATGAGAGATTTGTATGACAAGTCTGTGCGTTTGGAAATGGATCTTCGTGGGGTTGAGGCTATGCGGGCTGAGCTTCTTCAGGTTCGTGCTGATATCAAGGAACTCACTGTTGCGAGGCAAGAGCTCTCTGGCCAGGCGCAAGCGATGACCCAAGATTTGGCTAGAATCAATGCTGACTTGCAACAGGCACCAATATTAAGAGCAGAAATTGAATCTATGAAACAAGAACTGCAACGTGCTAGAGCTGCCATTGAGTATGAAAAGAAAGGGTATGCAGAGAATTATGAGCATGGTCAGGTAATGGAGAAGAACTTGATCTCAATGGCTAGGGAGCTGGAGAAACTTCGTGCAGAAATCGCTAATACTGAGAAGAGGGCACGTGCTTCAGCTGCAGTTGGAAATCCCAGTGGAGGTTACAATGCAAATTATGGTAATCCTGAAGCTGGATATGCAGGAAATCCTTATCCTGCCACCTATGGCATGAATCCTGTACAGGGTGGTGCTGAAAATTTTCCTCAGTATCCTATGCCTGCTAATAGATATTTAGGTTTGCAACCTTTTGGCCGTGTAAATCTGCTGCGTCATCATGAACTGAATTTTTATGTGATGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.47

Weight (kDa)

6.19

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14750
fragaria_vesca	FvH4_3g17610 FvH4_3g17610 FvH4_3g17610
malus_domestica	MD03G1250800.v1.1 MD11G1271000.v1.1
prunus_persica	Prupe.4G155500_v2.0.a1
pyrus_communis	pycom03g19850 pycom11g23970
rosa_chinensis	RchiOBHm_Chr5g0029311
rosa_laevigata	RLG00000033152
rosa_multiflora	Rmu_co8357187.1_g000001 Rmu_sc0004205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050700
rosa_rugosa	Rorug05G0113000 Rorug05G0113100 Rorug05G0113200
rosa_samantha	Rh5AG205300 Rh5BG203800 Rh5CG225200 Rh5DG207400
rosa_wichuraiana	Rw5G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	526
AccB7I	CCANNNNNTGG	2 cut(s)	232, 496
AciI	CCGC	3 cut(s)	186, 319, 403
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	2 cut(s)	469, 901
AcsI	RAATTY	2 cut(s)	847, 934
AcuI	CTGAAG	3 cut(s)	401, 708, 798
AcvI	CACGTG	1 cut(s)	719
AfaI	GTAC	1 cut(s)	831
AfiI	CCNNNNNNNGG	7 cut(s)	32, 232, 259, 496, 749, 782, 833
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	197, 206, 315, 338, 551
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	8 cut(s)	193, 272, 412, 463, 584, 673, 728, 782
AluI	AGCT	8 cut(s)	193, 272, 412, 463, 584, 673, 728, 782
Alw21I	GWGCWC	1 cut(s)	465
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	232
AoxI	GGCC	3 cut(s)	80, 469, 901
ApeKI	GCWGC	5 cut(s)	236, 272, 584, 728, 916
ApoI	RAATTY	2 cut(s)	847, 934
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	20, 80, 137
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	20, 137
BaeGI	GKGCMC	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	465
BbrPI	CACGTG	1 cut(s)	719
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	5 cut(s)	223, 259, 571, 715, 903
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	2 cut(s)	46, 888
BciT130I	CCWGG	1 cut(s)	473
BciVI	GTATCC	1 cut(s)	870
BfaI	CTAG	3 cut(s)	501, 579, 666
BfmI	CTRYAG	1 cut(s)	729
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	870
BisI	GCNGC	6 cut(s)	186, 237, 273, 585, 729, 917
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	6 cut(s)	187, 238, 274, 586, 730, 918
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	2 cut(s)	20, 137
BmgT120I	GGNCC	3 cut(s)	20, 80, 137
BmiI	GGNNCC	3 cut(s)	138, 139, 528
BmrFI	CCNGG	1 cut(s)	473
BmrI	ACTGGG	1 cut(s)	738
BmsI	GCATC	2 cut(s)	75, 187
BmuI	ACTGGG	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	695
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 232, 259, 496, 749, 782, 833
Bse1I	ACTGG	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	473
BseGI	GGATG	2 cut(s)	91, 337
BseLI	CCNNNNNNNGG	7 cut(s)	32, 232, 259, 496, 749, 782, 833
BseMII	CTCAG	3 cut(s)	399, 696, 869
BseNI	ACTGG	1 cut(s)	744
BseRI	GAGGAG	2 cut(s)	33, 188
BseSI	GKGCMC	1 cut(s)	718
BseXI	GCAGC	5 cut(s)	223, 259, 571, 715, 903
BseYI	CCCAGC	2 cut(s)	123, 189
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	3 cut(s)	82, 471, 903
BshNI	GGYRCC	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	7 cut(s)	32, 232, 259, 496, 749, 782, 833
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	82, 471, 903
Bsp1286I	GDGCHC	2 cut(s)	465, 718
Bsp1407I	TGTACA	1 cut(s)	829
Bsp143I	GATC	3 cut(s)	143, 379, 654
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	3 cut(s)	186, 319, 403
BspANI	GGCC	3 cut(s)	82, 471, 903
BspCNI	CTCAG	3 cut(s)	400, 697, 868
BspHI	TCATGA	1 cut(s)	925
BspLI	GGNNCC	3 cut(s)	138, 139, 528
BspMAI	CTGCAG	1 cut(s)	733
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	526
BspTI	CTTAAG	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	744
BssMI	GATC	3 cut(s)	143, 379, 654
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	64, 704
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	829
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	234, 405, 480, 870
BstDEI	CTNAG	3 cut(s)	408, 705, 855
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	91, 337
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	3 cut(s)	146, 382, 657
BstMBI	GATC	3 cut(s)	143, 379, 654
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 404, 409, 584, 695, 728, 788
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	1 cut(s)	718
BstV1I	GCAGC	5 cut(s)	223, 259, 571, 715, 903
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	870
BsuRI	GGCC	3 cut(s)	82, 471, 903
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	91, 337
BtsIMutI	CAGTG	2 cut(s)	444, 751
Cac8I	GCNNGC	4 cut(s)	234, 405, 480, 870
CaiI	CAGNNNCTG	1 cut(s)	232
CciI	TCATGA	1 cut(s)	925
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	3 cut(s)	20, 80, 137
CseI	GACGC	1 cut(s)	908
Csp6I	GTAC	1 cut(s)	830
CviQI	GTAC	1 cut(s)	830
DdeI	CTNAG	3 cut(s)	408, 705, 855
DpnI	GATC	3 cut(s)	145, 381, 656
DpnII	GATC	3 cut(s)	143, 379, 654
EaeI	YGGCCR	2 cut(s)	469, 901
Eam1104I	CTCTTC	2 cut(s)	64, 704
EarI	CTCTTC	2 cut(s)	64, 704
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	20, 137
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	3 cut(s)	401, 708, 798
Eco72I	CACGTG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	463
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	471
EcoRV	GATATC	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	465
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	123
FauI	CCCGC	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	186, 237, 273, 585, 729, 917
FokI	GGATG	2 cut(s)	78, 344
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	6 cut(s)	186, 237, 273, 585, 729, 917
FspBI	CTAG	3 cut(s)	501, 579, 666
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	6 cut(s)	186, 237, 273, 585, 729, 917
GsaI	CCCAGC	2 cut(s)	127, 193
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	3 cut(s)	82, 471, 903
HgaI	GACGC	1 cut(s)	908
HhaI	GCGC	1 cut(s)	478
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	6 cut(s)	119, 241, 311, 504, 551, 823
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	197, 776, 926, 951
Hpy8I	GTNNAC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	2 cut(s)	574, 718
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 404, 409, 584, 695, 728, 788
HpyF3I	CTNAG	3 cut(s)	408, 705, 855
HpySE526I	ACGT	2 cut(s)	574, 718
HspAI	GCGC	1 cut(s)	476
KflI	GGGWCCC	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	143, 379, 654
LmnI	GCTCC	2 cut(s)	175, 670
Lsp1109I	GCAGC	5 cut(s)	223, 259, 571, 715, 903
LweI	GCATC	2 cut(s)	75, 187
MaeI	CTAG	3 cut(s)	501, 579, 666
MaeII	ACGT	2 cut(s)	574, 718
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	3 cut(s)	145, 381, 656
MboI	GATC	3 cut(s)	143, 379, 654
MboII	GAAGA	7 cut(s)	21, 81, 203, 374, 407, 658, 721
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	465, 718
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	8 cut(s)	168, 263, 278, 546, 619, 763, 847, 934
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	715
Mox20I	TGGCCA	1 cut(s)	471
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	2 cut(s)	255, 536
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	728
MspCI	CTTAAG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	7 cut(s)	58, 404, 409, 584, 695, 728, 788
NdeII	GATC	3 cut(s)	143, 379, 654
NlaIV	GGNNCC	3 cut(s)	138, 139, 528
NsiI	ATGCAT	1 cut(s)	54
PagI	TCATGA	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	5 cut(s)	119, 311, 504, 551, 823
PflMI	CCANNNNNTGG	2 cut(s)	232, 496
PkrI	GCNGC	6 cut(s)	187, 238, 274, 586, 730, 918
PleI	GAGTC	1 cut(s)	235
PmaCI	CACGTG	1 cut(s)	719
PmlI	CACGTG	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	471
PspCI	CACGTG	1 cut(s)	719
PspFI	CCCAGC	2 cut(s)	123, 189
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	3 cut(s)	138, 139, 528
PspPI	GGNCC	3 cut(s)	20, 80, 137
PspPPI	RGGWCCY	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	831
RsaNI	GTAC	1 cut(s)	830
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	255, 536
SatI	GCNGC	6 cut(s)	186, 237, 273, 585, 729, 917
Sau3AI	GATC	3 cut(s)	143, 379, 654
Sau96I	GGNCC	3 cut(s)	20, 80, 137
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	465, 718
SfaNI	GCATC	2 cut(s)	75, 187
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	2 cut(s)	20, 137
SmlI	CTYRAG	2 cut(s)	104, 254
SmoI	CTYRAG	2 cut(s)	104, 254
Sse9I	AATT	8 cut(s)	168, 263, 278, 546, 619, 763, 847, 934
SsiI	CCGC	3 cut(s)	186, 319, 403
SspI	AATATT	1 cut(s)	534
SspMI	CTAG	3 cut(s)	501, 579, 666
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	471
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	2 cut(s)	577, 721
TasI	AATT	8 cut(s)	168, 263, 278, 546, 619, 763, 847, 934
TatI	WGTACW	1 cut(s)	829
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	5 cut(s)	119, 311, 504, 551, 823
Tru1I	TTAA	2 cut(s)	255, 536
Tru9I	TTAA	2 cut(s)	255, 536
TscAI	CASTG	2 cut(s)	451, 751
TseI	GCWGC	5 cut(s)	236, 272, 584, 728, 916
TspDTI	ATGAA	5 cut(s)	69, 572, 612, 836, 942
TspRI	CASTG	2 cut(s)	451, 751
Van91I	CCANNNNNTGG	2 cut(s)	232, 496
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	20, 137
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	2 cut(s)	847, 934
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	3 cut(s)	501, 579, 666
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.