Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009240

Physical Location & Seq

Genomic Coordinates Forward (+)

20486278 .. 20488157

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19850.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCCGGAAGAAATCGTGGACCACCTCATGCTGGATTGCCCCCTCCGGTTCACGAATCCCCATATGGAAGAGGACTTGGTCCGATGCCCCATCCTGCATTGCTCGAGGAAATGAGAGAATCCCAGCTTGGCATGGGTCCCAGACAACTTCCTCCCCACCTTGCAATAATTGAGGAGCATCTTGCGGCTCAACATCAAGATATACAAGGACTTCTAGGTAATAACCAAAGGCTGGCTGCAACCCATGTTGCTCTTAAGCAGGAATTGGAGGCTGCTCAATTTGAGTTGCAGCGAATGGCTTACCATGTTGATTCACTGCGGGCAGACAAGGATGTCAAAAGGAGAGATTTGTATGACAAGTCTGTTCGTTTGGAAGTGGACCTTCGTGGAGTGGAGGCCATGCGGAATGAGCTGCTTCAGGTTCATGCTGATATCAAGGAGCTCACTGCTGCGAGGCAGGAGCTCTCGGCTCAGGCACAAGTGATGACACAAGATCTGGCTAGAATGACTGCTGATTTGCAACAAGCACCAGCTTTGAGAGCAGAAATTGAAGCAATGAAACAGGAATTGCAACGTGCCAGAGCTGCCATTGAGTATGAAAAGAAAGGATATGCAGAGAATTATGAGCATGGTCAAATCATGGAGAAGAATTTGACATCAATGGCTAGGGAGCTGGAGAAACTTCGTGCAGAAATTGCTAACACTGAGAAGAGAGCAAGAGCTGCAGCTGCTATTGGAAATCCAGCTGTAGGTTATAATGCCAATTATGGGAATCCTGAAGCAGGATATGCAGGAAACCCCTATCCTGCCACTTATGGCATGAATCCTGTAACATTGATGTTTTTGTTTTGTACAGAGTGGTGCACCTATGCCAGGTTCATGGGGTGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.18

Weight (kDa)

6.23

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14750
fragaria_vesca	FvH4_3g17610 FvH4_3g17610 FvH4_3g17610
malus_domestica	MD03G1250800.v1.1 MD11G1271000.v1.1
prunus_persica	Prupe.4G155500_v2.0.a1
pyrus_communis	pycom03g19850 pycom11g23970
rosa_chinensis	RchiOBHm_Chr5g0029311
rosa_laevigata	RLG00000033152
rosa_multiflora	Rmu_co8357187.1_g000001 Rmu_sc0004205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050700
rosa_rugosa	Rorug05G0113000 Rorug05G0113100 Rorug05G0113200
rosa_samantha	Rh5AG205300 Rh5BG203800 Rh5CG225200 Rh5DG207400
rosa_wichuraiana	Rw5G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AasI	GACNNNNNNGTC	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	3 cut(s)	185, 319, 403
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	2 cut(s)	401, 798
AfaI	GTAC	1 cut(s)	853
AfiI	CCNNNNNNNGG	6 cut(s)	32, 232, 749, 768, 782, 873
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	551
AjnI	CCWGG	1 cut(s)	872
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
Alw21I	GWGCWC	3 cut(s)	444, 465, 866
Alw44I	GTGCAC	1 cut(s)	862
Ama87I	CYCGRG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	1 cut(s)	396
ApaLI	GTGCAC	1 cut(s)	862
ApeKI	GCWGC	9 cut(s)	236, 272, 289, 412, 449, 584, 722, 725, 728
ApoI	RAATTY	1 cut(s)	649
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
AspS9I	GGNCC	4 cut(s)	20, 80, 137, 379
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	4 cut(s)	20, 80, 137, 379
BaeGI	GKGCMC	1 cut(s)	866
BanII	GRGCYC	2 cut(s)	444, 465
Bbv12I	GWGCWC	3 cut(s)	444, 465, 866
BbvI	GCAGC	9 cut(s)	223, 259, 301, 399, 436, 571, 709, 715, 737
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	874
BfaI	CTAG	3 cut(s)	215, 501, 666
BfmI	CTRYAG	2 cut(s)	723, 747
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	874
Bme18I	GGWCC	4 cut(s)	20, 80, 137, 379
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	20, 80, 137, 379
BmiI	GGNNCC	2 cut(s)	138, 139
BmrFI	CCNGG	1 cut(s)	874
BmsI	GCATC	2 cut(s)	75, 187
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	471
BsaWI	WCCGGW	2 cut(s)	5, 46
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 232, 749, 768, 782, 873
Bse3DI	GCAATG	2 cut(s)	98, 561
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	874
BseGI	GGATG	2 cut(s)	91, 337
BseLI	CCNNNNNNNGG	6 cut(s)	32, 232, 749, 768, 782, 873
BseMI	GCAATG	2 cut(s)	98, 561
BseMII	CTCAG	2 cut(s)	485, 696
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	866
BseXI	GCAGC	9 cut(s)	223, 259, 301, 399, 436, 571, 709, 715, 737
BseYI	CCCAGC	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	1 cut(s)	398
BsiHKAI	GWGCWC	3 cut(s)	444, 465, 866
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	6, 47
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	6 cut(s)	32, 232, 749, 768, 782, 873
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	3 cut(s)	444, 465, 866
Bsp13I	TCCGGA	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	851
Bsp143I	GATC	1 cut(s)	493
BspACI	CCGC	3 cut(s)	185, 319, 403
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	2 cut(s)	484, 697
BspEI	TCCGGA	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	138, 139
BspMAI	CTGCAG	1 cut(s)	727
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	98, 561
BsrGI	TGTACA	1 cut(s)	851
BssMI	GATC	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	874
Bst6I	CTCTTC	2 cut(s)	64, 704
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	3 cut(s)	695, 722, 788
BstAUI	TGTACA	1 cut(s)	851
BstC8I	GCNNGC	2 cut(s)	234, 321
BstDEI	CTNAG	2 cut(s)	471, 705
BstENI	CCTNNNNNAGG	2 cut(s)	780, 871
BstF5I	GGATG	2 cut(s)	91, 337
BstKTI	GATC	1 cut(s)	496
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	7 cut(s)	409, 539, 584, 695, 722, 728, 788
BstNI	CCWGG	1 cut(s)	874
BstSCI	CCNGG	1 cut(s)	872
BstSFI	CTRYAG	2 cut(s)	723, 747
BstSLI	GKGCMC	1 cut(s)	866
BstV1I	GCAGC	9 cut(s)	223, 259, 301, 399, 436, 571, 709, 715, 737
BstX2I	RGATCY	1 cut(s)	493
BstXI	CCANNNNNNTGG	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	91, 337
BtsI	GCAGTG	2 cut(s)	314, 444
BtsIMutI	CAGTG	3 cut(s)	314, 444, 702
Cac8I	GCNNGC	2 cut(s)	234, 321
Cfr13I	GGNCC	4 cut(s)	20, 80, 137, 379
Csp6I	GTAC	1 cut(s)	852
CviQI	GTAC	1 cut(s)	852
DdeI	CTNAG	2 cut(s)	471, 705
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
Eam1104I	CTCTTC	2 cut(s)	64, 704
EarI	CTCTTC	2 cut(s)	64, 704
Ecl136II	GAGCTC	2 cut(s)	442, 463
Eco24I	GRGCYC	2 cut(s)	444, 465
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	4 cut(s)	20, 80, 137, 379
Eco53kI	GAGCTC	2 cut(s)	442, 463
Eco57I	CTGAAG	2 cut(s)	401, 798
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	2 cut(s)	442, 463
EcoNI	CCTNNNNNAGG	2 cut(s)	780, 871
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	872
EcoRV	GATATC	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	444, 465
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	123
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	2 cut(s)	64, 890
FokI	GGATG	2 cut(s)	78, 344
FriOI	GRGCYC	2 cut(s)	444, 465
FspBI	CTAG	3 cut(s)	215, 501, 666
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	2 cut(s)	6, 47
HinfI	GANTC	5 cut(s)	56, 119, 311, 772, 823
HpaII	CCGG	2 cut(s)	6, 47
Hpy166II	GTNNAC	4 cut(s)	20, 52, 379, 864
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	4 cut(s)	6, 53, 197, 776
Hpy8I	GTNNAC	4 cut(s)	20, 52, 379, 864
HpyAV	CCTTC	1 cut(s)	392
HpyCH4IV	ACGT	1 cut(s)	574
HpyF10VI	GCNNNNNNNGC	7 cut(s)	409, 539, 584, 695, 722, 728, 788
HpyF3I	CTNAG	2 cut(s)	471, 705
HpySE526I	ACGT	1 cut(s)	574
KflI	GGGWCCC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	4 cut(s)	175, 439, 460, 670
Lsp1109I	GCAGC	9 cut(s)	223, 259, 301, 399, 436, 571, 709, 715, 737
LweI	GCATC	2 cut(s)	75, 187
MaeI	CTAG	3 cut(s)	215, 501, 666
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	4 cut(s)	21, 81, 658, 721
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	3 cut(s)	444, 465, 866
MluCI	AATT	9 cut(s)	168, 263, 278, 546, 566, 619, 649, 693, 763
MnlI	CCTC	9 cut(s)	36, 54, 65, 100, 162, 166, 262, 388, 447
MroI	TCCGGA	1 cut(s)	5
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	728, 746
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	6, 47
MspR9I	CCNGG	1 cut(s)	874
MvaI	CCWGG	1 cut(s)	874
MwoI	GCNNNNNNNGC	7 cut(s)	409, 539, 584, 695, 722, 728, 788
NdeI	CATATG	2 cut(s)	64, 890
NdeII	GATC	1 cut(s)	493
NlaIV	GGNNCC	2 cut(s)	138, 139
NmeAIII	GCCGAG	1 cut(s)	446
PaeR7I	CTCGAG	1 cut(s)	104
PfeI	GAWTC	5 cut(s)	56, 119, 311, 772, 823
PflFI	GACNNNGTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	137
PsiI	TTATAA	1 cut(s)	756
Psp124BI	GAGCTC	2 cut(s)	444, 465
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	872
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	872
PspN4I	GGNNCC	2 cut(s)	138, 139
PspPI	GGNCC	4 cut(s)	20, 80, 137, 379
PspPPI	RGGWCCY	1 cut(s)	137
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	493
PsyI	GACNNNGTC	1 cut(s)	78
PvuII	CAGCTG	2 cut(s)	728, 746
RsaI	GTAC	1 cut(s)	853
RsaNI	GTAC	1 cut(s)	852
SacI	GAGCTC	2 cut(s)	444, 465
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	4 cut(s)	20, 80, 137, 379
ScrFI	CCNGG	1 cut(s)	874
SduI	GDGCHC	3 cut(s)	444, 465, 866
SfaNI	GCATC	2 cut(s)	75, 187
SfcI	CTRYAG	2 cut(s)	723, 747
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	4 cut(s)	20, 80, 137, 379
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	104, 254
SmoI	CTYRAG	2 cut(s)	104, 254
Sse9I	AATT	9 cut(s)	168, 263, 278, 546, 566, 619, 649, 693, 763
SsiI	CCGC	3 cut(s)	185, 319, 403
SspMI	CTAG	3 cut(s)	215, 501, 666
SstI	GAGCTC	2 cut(s)	444, 465
StyD4I	CCNGG	1 cut(s)	872
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	1 cut(s)	105
TasI	AATT	9 cut(s)	168, 263, 278, 546, 566, 619, 649, 693, 763
TatI	WGTACW	1 cut(s)	851
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	5 cut(s)	56, 119, 311, 772, 823
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	3 cut(s)	321, 451, 709
TseI	GCWGC	9 cut(s)	236, 272, 289, 412, 449, 584, 722, 725, 728
TspDTI	ATGAA	5 cut(s)	413, 572, 612, 836, 868
TspRI	CASTG	3 cut(s)	321, 451, 709
Tth111I	GACNNNGTC	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	1 cut(s)	862
VpaK11BI	GGWCC	4 cut(s)	20, 80, 137, 379
XagI	CCTNNNNNAGG	2 cut(s)	780, 871
XapI	RAATTY	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	3 cut(s)	215, 501, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.