Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009240

Physical Location & Seq

Genomic Coordinates Forward (+)

38639748 .. 38642112

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1271000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCTGGAAGAAATCGTGGACCACCTCATACTGGATTGCCCCCTCCGGTTCATGAATCCCCATATGGAAGAGGACTTGGGCCGATGCCCCATCCAGCATTAGTCGAGGAAATGAGAGAATCTCAGCTTGGCATGGGTCCCAGACAACGTCCTCCCCACCCTGCAATAATAGAGGAGCATCTTGCGGCTCAACATCAAGATATACAAGGACTTCTAGGTGATAACCAAAGGCTGGCTGCAACCCATGTTGCACTTAAGCAGGAATTGGAGGCTGCCCAATTTGAGTTGCAGCGAATGGCTTACCATGTTGATTCACTGCGGGCAGACAAGGATGTTCAAATGAGAGATTTGTATGACAAGTCTGTTCGTTTGGAAGTGGACCTTCGTGGAGTTGAGGCCATGCGGAATGAACTTCTTCAGGTTCGTGCTGATATCAAGGAGCTCACTGCTGCGAGGCAGGAGCTCTCGGCTCAGGCACAAGCAATGACACAAGATCTGGCTAGAATGACTGCTGATTTGCAACAAGCACCAGCTTTGAGAGCAGAAATTGAAGCAATGAAACAGGAATTGCAACGTGCTAGAGCTGCCATTGAGTATGAAAAGAAAGGATATGCAGAGAATTATGAGCATGGTCAGATCATGGAGAAGAATTTGACATCGATGGCTAGGGAGCTGGAGAAACTTCGTGCAGAAATTGCTAATACTGAGAAGAGAGCACGAGCTGCAGCTGCTGTTGGAAATCCAGCTGTAGGTTATAATGCAAATTATGGCAATCCTGAAGCAGGATATGCAGGAAATCCCTATCCTGCCAACTATGGCATGAATCCTGTACATAATGGTGCTGAAAATTTTCCTCAGTATACTCCTATGCCCGGTTCGTCAGGTGCTTATGACATGCAGCGAGCTCAGGGACACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

33.96

Weight (kDa)

6.14

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14750
fragaria_vesca	FvH4_3g17610 FvH4_3g17610 FvH4_3g17610
malus_domestica	MD03G1250800.v1.1 MD11G1271000.v1.1
prunus_persica	Prupe.4G155500_v2.0.a1
pyrus_communis	pycom03g19850 pycom11g23970
rosa_chinensis	RchiOBHm_Chr5g0029311
rosa_laevigata	RLG00000033152
rosa_multiflora	Rmu_co8357187.1_g000001 Rmu_sc0004205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050700
rosa_rugosa	Rorug05G0113000 Rorug05G0113100 Rorug05G0113200
rosa_samantha	Rh5AG205300 Rh5BG203800 Rh5CG225200 Rh5DG207400
rosa_wichuraiana	Rw5G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	860
AciI	CCGC	3 cut(s)	185, 319, 403
AcsI	RAATTY	2 cut(s)	649, 847
AcuI	CTGAAG	2 cut(s)	401, 798
AfaI	GTAC	1 cut(s)	831
AfiI	CCNNNNNNNGG	5 cut(s)	32, 232, 749, 782, 872
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	338, 551
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
Alw21I	GWGCWC	4 cut(s)	444, 465, 718, 907
AlwNI	CAGNNNCTG	1 cut(s)	731
AoxI	GGCC	2 cut(s)	80, 396
ApeKI	GCWGC	9 cut(s)	236, 272, 289, 449, 584, 722, 725, 728, 898
ApoI	RAATTY	2 cut(s)	649, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
Asp700I	GAANNNNTTC	2 cut(s)	414, 849
AspS9I	GGNCC	4 cut(s)	20, 80, 137, 379
AsuC2I	CCSGG	1 cut(s)	873
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	3 cut(s)	20, 137, 379
BanII	GRGCYC	3 cut(s)	444, 465, 907
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	4 cut(s)	444, 465, 718, 907
BbvI	GCAGC	9 cut(s)	223, 259, 301, 436, 571, 709, 715, 737, 910
BccI	CCATC	2 cut(s)	99, 655
BcnI	CCSGG	1 cut(s)	873
BfaI	CTAG	4 cut(s)	215, 501, 579, 666
BfmI	CTRYAG	2 cut(s)	723, 747
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	873
Bme18I	GGWCC	3 cut(s)	20, 137, 379
BmgT120I	GGNCC	4 cut(s)	20, 80, 137, 379
BmiI	GGNNCC	2 cut(s)	138, 139
BmrFI	CCNGG	1 cut(s)	873
BmsI	GCATC	2 cut(s)	75, 187
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	2 cut(s)	471, 906
BpuMI	CCSGG	1 cut(s)	873
Bsa29I	ATCGAT	1 cut(s)	659
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 232, 749, 782, 872
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	489, 561
BseCI	ATCGAT	1 cut(s)	659
BseGI	GGATG	2 cut(s)	91, 337
BseLI	CCNNNNNNNGG	5 cut(s)	32, 232, 749, 782, 872
BseMI	GCAATG	2 cut(s)	489, 561
BseMII	CTCAG	5 cut(s)	137, 485, 696, 869, 920
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	9 cut(s)	223, 259, 301, 436, 571, 709, 715, 737, 910
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	82, 398
BshVI	ATCGAT	1 cut(s)	659
BsiHKAI	GWGCWC	4 cut(s)	444, 465, 718, 907
BsiSI	CCGG	2 cut(s)	47, 873
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	5 cut(s)	32, 232, 749, 782, 872
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	82, 398
Bsp1286I	GDGCHC	4 cut(s)	444, 465, 718, 907
Bsp1407I	TGTACA	1 cut(s)	829
Bsp143I	GATC	2 cut(s)	493, 636
BspACI	CCGC	3 cut(s)	185, 319, 403
BspANI	GGCC	2 cut(s)	82, 398
BspCNI	CTCAG	5 cut(s)	136, 484, 697, 868, 919
BspDI	ATCGAT	1 cut(s)	659
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	138, 139
BspMAI	CTGCAG	1 cut(s)	727
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	489, 561
BsrGI	TGTACA	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	493, 636
BssNAI	GTATAC	1 cut(s)	861
BssSI	CACGAG	1 cut(s)	717
Bst1107I	GTATAC	1 cut(s)	861
Bst2BI	CACGAG	1 cut(s)	717
Bst6I	CTCTTC	2 cut(s)	64, 704
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	3 cut(s)	695, 722, 788
BstAUI	TGTACA	1 cut(s)	829
BstC8I	GCNNGC	3 cut(s)	234, 321, 903
BstDEI	CTNAG	5 cut(s)	123, 471, 705, 855, 906
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	91, 337
BstKTI	GATC	2 cut(s)	496, 639
BstMBI	GATC	2 cut(s)	493, 636
BstMWI	GCNNNNNNNGC	6 cut(s)	539, 584, 695, 722, 728, 788
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	1 cut(s)	871
BstSFI	CTRYAG	2 cut(s)	723, 747
BstV1I	GCAGC	9 cut(s)	223, 259, 301, 436, 571, 709, 715, 737, 910
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BstZ17I	GTATAC	1 cut(s)	861
Bsu15I	ATCGAT	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	82, 398
BsuTUI	ATCGAT	1 cut(s)	659
BtsCI	GGATG	2 cut(s)	91, 337
BtsI	GCAGTG	2 cut(s)	314, 444
BtsIMutI	CAGTG	2 cut(s)	314, 444
Cac8I	GCNNGC	3 cut(s)	234, 321, 903
CaiI	CAGNNNCTG	1 cut(s)	731
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	4 cut(s)	20, 80, 137, 379
ClaI	ATCGAT	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	830
CviAII	CATG	9 cut(s)	53, 133, 245, 305, 400, 629, 640, 820, 895
CviQI	GTAC	1 cut(s)	830
DdeI	CTNAG	5 cut(s)	123, 471, 705, 855, 906
DpnI	GATC	2 cut(s)	495, 638
DpnII	GATC	2 cut(s)	493, 636
Eam1104I	CTCTTC	2 cut(s)	64, 704
EarI	CTCTTC	2 cut(s)	64, 704
Ecl136II	GAGCTC	3 cut(s)	442, 463, 905
Eco24I	GRGCYC	3 cut(s)	444, 465, 907
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	3 cut(s)	20, 137, 379
Eco53kI	GAGCTC	3 cut(s)	442, 463, 905
Eco57I	CTGAAG	2 cut(s)	401, 798
EcoICRI	GAGCTC	3 cut(s)	442, 463, 905
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	433
EcoT38I	GRGCYC	3 cut(s)	444, 465, 907
FaeI	CATG	9 cut(s)	56, 136, 248, 308, 403, 632, 643, 823, 898
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	9 cut(s)	52, 132, 244, 304, 399, 628, 639, 819, 894
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	860
FokI	GGATG	2 cut(s)	78, 344
FriOI	GRGCYC	3 cut(s)	444, 465, 907
FspBI	CTAG	4 cut(s)	215, 501, 579, 666
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	2 cut(s)	82, 398
HapII	CCGG	2 cut(s)	47, 873
Hin1II	CATG	9 cut(s)	56, 136, 248, 308, 403, 632, 643, 823, 898
HinfI	GANTC	4 cut(s)	56, 119, 311, 823
HpaII	CCGG	2 cut(s)	47, 873
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	3 cut(s)	20, 379, 861
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	4 cut(s)	6, 53, 197, 776
Hpy8I	GTNNAC	3 cut(s)	20, 379, 861
HpyAV	CCTTC	1 cut(s)	392
HpyCH4IV	ACGT	2 cut(s)	148, 574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	539, 584, 695, 722, 728, 788
HpyF3I	CTNAG	5 cut(s)	123, 471, 705, 855, 906
HpySE526I	ACGT	2 cut(s)	148, 574
Hsp92II	CATG	9 cut(s)	56, 136, 248, 308, 403, 632, 643, 823, 898
KflI	GGGWCCC	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	493, 636
LmnI	GCTCC	4 cut(s)	175, 439, 460, 670
Lsp1109I	GCAGC	9 cut(s)	223, 259, 301, 436, 571, 709, 715, 737, 910
LweI	GCATC	2 cut(s)	75, 187
MaeI	CTAG	4 cut(s)	215, 501, 579, 666
MaeII	ACGT	2 cut(s)	148, 574
MalI	GATC	2 cut(s)	495, 638
MboI	GATC	2 cut(s)	493, 636
MboII	GAAGA	5 cut(s)	21, 81, 407, 658, 721
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	4 cut(s)	444, 465, 718, 907
MluCI	AATT	9 cut(s)	263, 278, 546, 566, 619, 649, 693, 763, 847
MmeI	TCCRAC	1 cut(s)	715
MroXI	GAANNNNTTC	2 cut(s)	414, 849
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	837
MspA1I	CMGCKG	2 cut(s)	728, 746
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	47, 873
MspR9I	CCNGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	6 cut(s)	539, 584, 695, 722, 728, 788
NciI	CCSGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	2 cut(s)	493, 636
NlaIII	CATG	9 cut(s)	56, 136, 248, 308, 403, 632, 643, 823, 898
NlaIV	GGNNCC	2 cut(s)	138, 139
NmeAIII	GCCGAG	1 cut(s)	446
NspI	RCATGY	1 cut(s)	898
PagI	TCATGA	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	414, 849
PfeI	GAWTC	4 cut(s)	56, 119, 311, 823
PflFI	GACNNNGTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	137
PsiI	TTATAA	1 cut(s)	756
Psp124BI	GAGCTC	3 cut(s)	444, 465, 907
Psp5II	RGGWCCY	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	138, 139
PspPI	GGNCC	4 cut(s)	20, 80, 137, 379
PspPPI	RGGWCCY	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	493
PsyI	GACNNNGTC	1 cut(s)	147
PvuII	CAGCTG	2 cut(s)	728, 746
RsaI	GTAC	1 cut(s)	831
RsaNI	GTAC	1 cut(s)	830
RseI	CAYNNNNRTG	1 cut(s)	837
SacI	GAGCTC	3 cut(s)	444, 465, 907
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	493, 636
Sau96I	GGNCC	4 cut(s)	20, 80, 137, 379
ScrFI	CCNGG	1 cut(s)	873
SduI	GDGCHC	4 cut(s)	444, 465, 718, 907
SfaNI	GCATC	2 cut(s)	75, 187
SfcI	CTRYAG	2 cut(s)	723, 747
SinI	GGWCC	3 cut(s)	20, 137, 379
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	9 cut(s)	263, 278, 546, 566, 619, 649, 693, 763, 847
SsiI	CCGC	3 cut(s)	185, 319, 403
SspMI	CTAG	4 cut(s)	215, 501, 579, 666
SstI	GAGCTC	3 cut(s)	444, 465, 907
StyD4I	CCNGG	1 cut(s)	871
TaiI	ACGT	2 cut(s)	151, 577
TaqI	TCGA	2 cut(s)	105, 659
TasI	AATT	9 cut(s)	263, 278, 546, 566, 619, 649, 693, 763, 847
TatI	WGTACW	1 cut(s)	829
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	56, 119, 311, 823
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	321, 451
TseI	GCWGC	9 cut(s)	236, 272, 289, 449, 584, 722, 725, 728, 898
TspDTI	ATGAA	6 cut(s)	41, 69, 423, 572, 612, 836
TspRI	CASTG	2 cut(s)	321, 451
Tth111I	GACNNNGTC	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	3 cut(s)	20, 137, 379
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	2 cut(s)	649, 847
XceI	RCATGY	1 cut(s)	898
XmiI	GTMKAC	1 cut(s)	860
XmnI	GAANNNNTTC	2 cut(s)	414, 849
XspI	CTAG	4 cut(s)	215, 501, 579, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.