Rorug05G0113200

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004015
Physical Location & Seq
Reverse (-)
10082154 .. 10085368
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0113200.1

Sequence Viewer

Length: 795 bp
ATGTCGTCCAACACTCACTCTCCGTGCGCCGCGTGCAAGTTTCTTCGGCGGAAATGCACGCAGGAGTGCGTTTTCGCGCCGTACTTCCCGCCGGACCAGCCCCAGAAATTCGCCAACGTCCACCGTGTGTACGGCGCGAGCAACGTGGCCAAGATCCTCAACGAGCTCAACGCCGCCCACCGTGAGGACGCCGTGACGTCACTGGCCTATGAGGCGGAGGCTCGCCTCCGGGACCCCGTGTACGGCTGCGTGGGGCTCATCTCCATCCTCCAGAACAGGCTCAAGCAGCTCCAGACGGATCTCTACAATGCCAAGAAGGATCTCTCGACCTACATTGGCCCTCAAGCGCTGATGATTCCAGTGTTCCATCCGCAGCAGCCGGAGATGAATGGGGGTGGCGCAATGTCTGTCCCCATGTTGGGAGTCCCAACTGGCCCGCAGCAGGGCGGACTTGCTGGGGGACAGTTGGTGATTAGGGATCAGCAGCAGCAGCAGCAGATGTTTGAGGCTCAGCAGCAGGAGCTGGTGAGGTTCAATGTGAATGGGATGGACAATGGAAATGGGTTTAATCAGATGGCTGGAGGAGGTGGTAGTGGTGGTGGAGGTAGTAATGGTGTGGTGTCAGCTGGCTCGTTGGGTCTGGGAGGTTTTGATAACAATGCTTTCAATAACCAGATGCAAGCTGCGGCCGCTGCACATCATCATCAGCATTCTCTTGACTATCAGCTTCAGGCTCAGCTCATGCTCCAACCACAGCAGCAATCGCAGCCGAAATCAGAGGGTGAGGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

264

Amino Acids

28.4

Weight (kDa)

6.22

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 3.9e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 200
AccII CGCG 3 cut(s) 32, 77, 137
AclWI GGATC 4 cut(s) 148, 306, 327, 486
AcoI YGGCCR 2 cut(s) 147, 687
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 713
AcyI GRCGYC 2 cut(s) 189, 197
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 3 cut(s) 83, 131, 242
AfeI AGCGCT 1 cut(s) 348
AfiI CCNNNNNNNGG 6 cut(s) 184, 242, 418, 419, 442, 443
AgsI TTSAA 2 cut(s) 535, 667
AluBI AGCT 7 cut(s) 166, 289, 523, 626, 683, 727, 739
AluI AGCT 7 cut(s) 166, 289, 523, 626, 683, 727, 739
Alw21I GWGCWC 1 cut(s) 168
AlwI GGATC 4 cut(s) 148, 306, 327, 486
AlwNI CAGNNNCTG 1 cut(s) 523
Aor51HI AGCGCT 1 cut(s) 348
AoxI GGCC 5 cut(s) 147, 204, 337, 433, 687
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 5 cut(s) 29, 79, 137, 349, 401
AspS9I GGNCC 4 cut(s) 94, 232, 338, 434
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 481, 538, 794
AvaII GGWCC 2 cut(s) 94, 232
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 2 cut(s) 168, 258
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 4 cut(s) 272, 375, 541, 568
BceAI ACGGC 4 cut(s) 64, 148, 176, 259
BcnI CCSGG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 212
BlpI GCTNAGC 2 cut(s) 510, 735
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 94, 232
BmgT120I GGNCC 4 cut(s) 94, 232, 338, 434
BmiI GGNNCC 2 cut(s) 233, 234
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 666
BpmI CTGGAG 3 cut(s) 254, 275, 600
Bpu1102I GCTNAGC 2 cut(s) 510, 735
BpuEI CTTGAG 2 cut(s) 266, 327
BpuMI CCSGG 1 cut(s) 230
BsaHI GRCGYC 2 cut(s) 189, 197
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 6 cut(s) 184, 242, 418, 419, 442, 443
Bse1I ACTGG 3 cut(s) 207, 359, 436
Bse3DI GCAATG 1 cut(s) 408
BseGI GGATG 3 cut(s) 264, 367, 552
BseLI CCNNNNNNNGG 6 cut(s) 184, 242, 418, 419, 442, 443
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 524, 749
BseNI ACTGG 3 cut(s) 207, 359, 436
BseRI GAGGAG 1 cut(s) 597
BseX3I CGGCCG 1 cut(s) 687
BseYI CCCAGC 1 cut(s) 455
BsgI GTGCAG 1 cut(s) 678
Bsh1236I CGCG 3 cut(s) 32, 77, 137
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 5 cut(s) 149, 206, 339, 435, 689
BsiEI CGRYCG 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 3 cut(s) 92, 229, 380
BslFI GGGAC 4 cut(s) 245, 395, 410, 474
BslI CCNNNNNNNGG 6 cut(s) 184, 242, 418, 419, 442, 443
BsmFI GGGAC 4 cut(s) 245, 395, 410, 474
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 5 cut(s) 149, 206, 339, 435, 689
Bsp1286I GDGCHC 2 cut(s) 168, 258
Bsp143I GATC 4 cut(s) 153, 298, 319, 478
Bsp1720I GCTNAGC 2 cut(s) 510, 735
BspANI GGCC 5 cut(s) 149, 206, 339, 435, 689
BspCNI CTCAG 2 cut(s) 523, 748
BspFNI CGCG 3 cut(s) 32, 77, 137
BspLI GGNNCC 2 cut(s) 233, 234
BspPI GGATC 4 cut(s) 148, 306, 327, 486
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 3 cut(s) 207, 359, 436
BssMI GATC 4 cut(s) 153, 298, 319, 478
BssNI GRCGYC 2 cut(s) 189, 197
Bst4CI ACNGT 3 cut(s) 125, 182, 465
BstACI GRCGYC 2 cut(s) 189, 197
BstC8I GCNNGC 7 cut(s) 34, 59, 139, 223, 437, 628, 681
BstDEI CTNAG 2 cut(s) 510, 735
BstF5I GGATG 3 cut(s) 264, 367, 552
BstFNI CGCG 3 cut(s) 32, 77, 137
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 5 cut(s) 29, 79, 137, 349, 401
BstKTI GATC 4 cut(s) 156, 301, 322, 481
BstMBI GATC 4 cut(s) 153, 298, 319, 478
BstMCI CGRYCG 1 cut(s) 690
BstSCI CCNGG 1 cut(s) 228
BstUI CGCG 3 cut(s) 32, 77, 137
BstX2I RGATCY 3 cut(s) 153, 298, 319
BstYI RGATCY 3 cut(s) 153, 298, 319
BstZI CGGCCG 1 cut(s) 687
BsuRI GGCC 5 cut(s) 149, 206, 339, 435, 689
BtsCI GGATG 3 cut(s) 264, 367, 552
BtsIMutI CAGTG 2 cut(s) 200, 366
Cac8I GCNNGC 7 cut(s) 34, 59, 139, 223, 437, 628, 681
CaiI CAGNNNCTG 1 cut(s) 523
CciNI GCGGCCGC 1 cut(s) 687
CfoI GCGC 5 cut(s) 29, 79, 137, 349, 401
Cfr13I GGNCC 4 cut(s) 94, 232, 338, 434
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 82, 130, 241
CviAII CATG 2 cut(s) 415, 742
CviQI GTAC 3 cut(s) 82, 130, 241
DdeI CTNAG 2 cut(s) 510, 735
DpnI GATC 4 cut(s) 155, 300, 321, 480
DpnII GATC 4 cut(s) 153, 298, 319, 478
DraIII CACNNNGTG 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 147, 687
EagI CGGCCG 1 cut(s) 687
EciI GGCGGA 3 cut(s) 64, 230, 462
Ecl136II GAGCTC 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 687
Eco24I GRGCYC 2 cut(s) 168, 258
Eco47I GGWCC 2 cut(s) 94, 232
Eco47III AGCGCT 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 687
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 168, 258
FaeI CATG 2 cut(s) 418, 745
FaiI YATR 3 cut(s) 210, 416, 743
FaqI GGGAC 4 cut(s) 245, 395, 410, 474
FatI CATG 2 cut(s) 414, 741
FauI CCCGC 2 cut(s) 96, 444
FokI GGATG 3 cut(s) 251, 354, 559
FriOI GRGCYC 2 cut(s) 168, 258
GlaI GCGC 5 cut(s) 28, 78, 136, 348, 400
GsaI CCCAGC 1 cut(s) 459
GsuI CTGGAG 3 cut(s) 254, 275, 600
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 5 cut(s) 149, 206, 339, 435, 689
HapII CCGG 3 cut(s) 92, 229, 380
HgaI GACGC 1 cut(s) 197
HhaI GCGC 5 cut(s) 29, 79, 137, 349, 401
Hin1I GRCGYC 2 cut(s) 189, 197
Hin1II CATG 2 cut(s) 418, 745
Hin6I GCGC 5 cut(s) 27, 77, 135, 347, 399
HinP1I GCGC 5 cut(s) 27, 77, 135, 347, 399
HinfI GANTC 2 cut(s) 355, 423
HpaII CCGG 3 cut(s) 92, 229, 380
HphI GGTGA 3 cut(s) 481, 538, 794
Hpy166II GTNNAC 3 cut(s) 121, 130, 241
Hpy188I TCNGA 2 cut(s) 573, 778
Hpy188III TCNNGA 4 cut(s) 271, 292, 325, 716
Hpy8I GTNNAC 3 cut(s) 121, 130, 241
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 125, 182, 465
HpyCH4IV ACGT 3 cut(s) 117, 144, 197
HpyCH4V TGCA 4 cut(s) 36, 57, 679, 695
HpyF3I CTNAG 2 cut(s) 510, 735
HpySE526I ACGT 3 cut(s) 117, 144, 197
Hsp92I GRCGYC 2 cut(s) 189, 197
Hsp92II CATG 2 cut(s) 418, 745
HspAI GCGC 5 cut(s) 27, 77, 135, 347, 399
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 4 cut(s) 153, 298, 319, 478
LmnI GCTCC 3 cut(s) 294, 520, 750
LweI GCATC 1 cut(s) 666
MaeII ACGT 3 cut(s) 117, 144, 197
MaeIII GTNAC 2 cut(s) 193, 198
MalI GATC 4 cut(s) 155, 300, 321, 480
MboI GATC 4 cut(s) 153, 298, 319, 478
MboII GAAGA 1 cut(s) 35
MflI RGATCY 3 cut(s) 153, 298, 319
MhlI GDGCHC 2 cut(s) 168, 258
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 2 cut(s) 33, 772
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
MseI TTAA 1 cut(s) 567
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 626, 692
MspI CCGG 3 cut(s) 92, 229, 380
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 709
MvnI CGCG 3 cut(s) 32, 77, 137
NciI CCSGG 1 cut(s) 230
NdeII GATC 4 cut(s) 153, 298, 319, 478
NlaIII CATG 2 cut(s) 418, 745
NlaIV GGNNCC 2 cut(s) 233, 234
NmuCI GTSAC 2 cut(s) 193, 198
NotI GCGGCCGC 1 cut(s) 687
PctI GAATGC 1 cut(s) 709
PfeI GAWTC 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 228
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 455
PspN4I GGNNCC 2 cut(s) 233, 234
PspPI GGNCC 4 cut(s) 94, 232, 338, 434
PspPPI RGGWCCY 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 523
PsuI RGATCY 3 cut(s) 153, 298, 319
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 3 cut(s) 83, 131, 242
RsaNI GTAC 3 cut(s) 82, 130, 241
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 567
Sau3AI GATC 4 cut(s) 153, 298, 319, 478
Sau96I GGNCC 4 cut(s) 94, 232, 338, 434
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 168, 258
SfaNI GCATC 1 cut(s) 666
SinI GGWCC 2 cut(s) 94, 232
SmlI CTYRAG 2 cut(s) 281, 342
SmoI CTYRAG 2 cut(s) 281, 342
Sse9I AATT 1 cut(s) 107
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 125, 182, 465
TaiI ACGT 3 cut(s) 120, 147, 200
TaqI TCGA 1 cut(s) 326
TasI AATT 1 cut(s) 107
TauI GCSGC 4 cut(s) 32, 176, 689, 692
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 207, 366
TseFI GTSAC 2 cut(s) 193, 198
Tsp45I GTSAC 2 cut(s) 193, 198
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 2 cut(s) 12, 311
TspRI CASTG 2 cut(s) 207, 366
VpaK11BI GGWCC 2 cut(s) 94, 232
XapI RAATTY 1 cut(s) 107
ZraI GACGTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.