Rorug04G0200700

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004015
Physical Location & Seq
Forward (+)
34843947 .. 34845360
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0200700.1

Sequence Viewer

Length: 1323 bp
ATGGCAAACTGTAGCAAATTGCATGTGCCCGACGAAATCGTGGAGCAAATTCTATTGAGACTACCTCCTAAATCCTTGATGCGATTCAAATGCGTCTGTACCTTGTGGTGCAATCTTATCAAAAGCCCTAGTTTCGTAGCCAAACACCTCTCCAATTCTCTGCGCGCATCCTCATCCGTTTCCATTCTTTTCAAGCACACCGTTGAGAAGATGGTTGACCATGAGATATCTAATGAAGAAGGGTCGATTCTATTGTCATTACTTAATCGCTGCAACGATGATGTTGACGACCTTTTTTCAATTGTTGTTGAGAATCTTAATGTTCCGCCTCCTCTGAATCAGATAAGATTTTCCTCATATCTTGGAATTGCAGGTCATTGTGATGGTATTATTTGTCTGAAACTTTTTTATGGTAACGTTGTTTTATGTAACCCAGCAATCAAGGAATTCAAGCTTCTTCCCAAGTCTGGTCTTATCCTCCCCAATAGGGACTCTTTGTATCTTGCCTTTGAATTAGAAAACTACACTGAATTTTTGGGATTTGGCTATGATCCAAAAGGTAAAGATTACAAGGTTGTTAGATTGCTAGTGTATAGTTTGTTTTCTTATTGGTTTAAAACAGAGGTATACACAATGGGTTCTAATTCTTGGCGAGAGATCAAGACCAAATATACCAATGATTATCATTTCAAAGATTGCTGGGATAAGCAACAGCTGTTTTACGAGGGAAAATATTATTGGCAGGTATGTGGGTTTGACAGGGGCCACAATCTCGTCCACAAGTTCATCCTTTCATTTGATATGGGTGATGAACTTTTTTATGAGATATCGCTTCCCTGGCAAGATACAGAAACATATGGAGGGACTCAAGGGAGGCTTGCAGTGTGGAAAGGCTCTATTGCTCTTGTTTCCGTTGAATATGAAATTGTGTTTCCTCAATCCTTCGACATATGGGTTATGATGAATAATTCCTGTGGTATCAAGAGTCCGTGGACAAAATACTTGACCATAGGACCCATGGAAGGCATTGACATTCCAGTGGTTTATCCATTGGTATTTTGGGAAAATGACGAGCTTGTTATGGTTGCTGTGGATGGACGCGTAGTCTCGTATAACCTTGGTACACAGACATTCAAGTATCTTCCTATTCATTTTGTTGAAGATTTTCCAGACACTCAAGCGGTTGTTTATATGAATAGTATTGTTTCCGTTAAGGGAGGTGACAAACTTGAAGGCATAGATAATACTGCTTTTTATGGCATCATGACACTTCCAAATGGCAGGTTGACGAGTGCTGGACCACCGAAATACTCCTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

440

Amino Acids

50.42

Weight (kDa)

5.56

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 45 3.7e-10 F-box domain
F-box-like PF12937 8 - 45 5.5e-07 F-box-like
FBA_3 PF08268 121 - 388 1.9e-21 F-box associated beta propeller domain
FBA_1 PF07734 124 - 404 5.8e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 362, 733, 1272
AccI GTMKAC 1 cut(s) 627
AccII CGCG 2 cut(s) 165, 1101
AciI CCGC 2 cut(s) 326, 1181
AclI AACGTT 1 cut(s) 417
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 3 cut(s) 48, 446, 530
AfaI GTAC 2 cut(s) 100, 1123
AfiI CCNNNNNNNGG 3 cut(s) 467, 487, 1022
AflIII ACRYGT 1 cut(s) 1099
AhdI GACNNNNNGTC 1 cut(s) 1103
AjnI CCWGG 1 cut(s) 836
AjuI GAANNNNNNNTTGG 2 cut(s) 721, 753
AluBI AGCT 3 cut(s) 454, 715, 1075
AluI AGCT 3 cut(s) 454, 715, 1075
Alw26I GTCTC 2 cut(s) 52, 1111
AlwI GGATC 1 cut(s) 545
AoxI GGCC 1 cut(s) 763
ApeKI GCWGC 1 cut(s) 270
ApoI RAATTY 3 cut(s) 48, 446, 530
Asp700I GAANNNNTTC 1 cut(s) 1164
AspLEI GCGC 2 cut(s) 165, 167
AspS9I GGNCC 3 cut(s) 763, 1013, 1298
AsuHPI GGTGA 2 cut(s) 818, 1232
AvaII GGWCC 2 cut(s) 1013, 1298
BaeGI GKGCMC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 257
BccI CCATC 3 cut(s) 205, 377, 1088
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 1 cut(s) 838
BcoDI GTCTC 2 cut(s) 52, 1111
BfaI CTAG 3 cut(s) 129, 587, 1321
BfmI CTRYAG 1 cut(s) 10
BfuAI ACCTGC 3 cut(s) 362, 733, 1272
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 838
Bme18I GGWCC 2 cut(s) 1013, 1298
BmeRI GACNNNNNGTC 1 cut(s) 1103
BmgT120I GGNCC 3 cut(s) 763, 1013, 1298
BmiI GGNNCC 2 cut(s) 764, 1015
BmrFI CCNGG 1 cut(s) 838
BmsI GCATC 3 cut(s) 69, 176, 1269
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpuEI CTTGAG 2 cut(s) 852, 1161
BsaJI CCNNGG 4 cut(s) 836, 989, 1017, 1117
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 487, 1022
Bse1I ACTGG 1 cut(s) 1037
BseBI CCWGG 1 cut(s) 838
BseDI CCNNGG 4 cut(s) 836, 989, 1017, 1117
BseGI GGATG 4 cut(s) 167, 173, 786, 1099
BseLI CCNNNNNNNGG 3 cut(s) 467, 487, 1022
BseNI ACTGG 1 cut(s) 1037
BsePI GCGCGC 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 2 cut(s) 433, 699
Bsh1236I CGCG 2 cut(s) 165, 1101
BshFI GGCC 1 cut(s) 765
BslFI GGGAC 2 cut(s) 503, 877
BslI CCNNNNNNNGG 3 cut(s) 467, 487, 1022
BsmAI GTCTC 2 cut(s) 52, 1111
BsmFI GGGAC 2 cut(s) 503, 877
BsnI GGCC 1 cut(s) 765
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 550, 657
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 2 cut(s) 326, 1181
BspANI GGCC 1 cut(s) 765
BspFNI CGCG 2 cut(s) 165, 1101
BspHI TCATGA 1 cut(s) 1263
BspLI GGNNCC 2 cut(s) 764, 1015
BspMI ACCTGC 3 cut(s) 362, 733, 1272
BspPI GGATC 1 cut(s) 545
BsrI ACTGG 1 cut(s) 1037
BssECI CCNNGG 4 cut(s) 836, 989, 1017, 1117
BssHII GCGCGC 1 cut(s) 163
BssMI GATC 2 cut(s) 550, 657
BssNAI GTATAC 1 cut(s) 628
BssT1I CCWWGG 2 cut(s) 1017, 1117
Bst1107I GTATAC 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 838
Bst4CI ACNGT 2 cut(s) 11, 202
BstC8I GCNNGC 2 cut(s) 165, 879
BstDSI CCRYGG 2 cut(s) 989, 1017
BstF5I GGATG 4 cut(s) 167, 173, 786, 1099
BstFNI CGCG 2 cut(s) 165, 1101
BstHHI GCGC 2 cut(s) 165, 167
BstKTI GATC 2 cut(s) 553, 660
BstMAI GTCTC 2 cut(s) 52, 1111
BstMBI GATC 2 cut(s) 550, 657
BstMWI GCNNNNNNNGC 1 cut(s) 838
BstNI CCWGG 1 cut(s) 838
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 836
BstSFI CTRYAG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 30
BstUI CGCG 2 cut(s) 165, 1101
BstV1I GCAGC 1 cut(s) 257
BstZ17I GTATAC 1 cut(s) 628
BsuRI GGCC 1 cut(s) 765
BtgI CCRYGG 2 cut(s) 989, 1017
BtsCI GGATG 4 cut(s) 167, 173, 786, 1099
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 525, 888, 1044
BveI ACCTGC 3 cut(s) 362, 733, 1272
Cac8I GCNNGC 2 cut(s) 165, 879
CciI TCATGA 1 cut(s) 1263
CfoI GCGC 2 cut(s) 165, 167
Cfr13I GGNCC 3 cut(s) 763, 1013, 1298
CseI GACGC 2 cut(s) 82, 1107
Csp6I GTAC 2 cut(s) 99, 1122
CviAII CATG 4 cut(s) 23, 221, 1018, 1264
CviJI RGCY 9 cut(s) 126, 140, 454, 546, 715, 765, 877, 894, 1075
CviKI_1 RGCY 9 cut(s) 126, 140, 454, 546, 715, 765, 877, 894, 1075
CviQI GTAC 2 cut(s) 99, 1122
DpnI GATC 2 cut(s) 552, 659
DpnII GATC 2 cut(s) 550, 657
DraI TTTAAA 1 cut(s) 616
DriI GACNNNNNGTC 1 cut(s) 1103
Eam1105I GACNNNNNGTC 1 cut(s) 1103
EciI GGCGGA 1 cut(s) 315
Eco130I CCWWGG 2 cut(s) 1017, 1117
Eco32I GATATC 2 cut(s) 228, 828
Eco47I GGWCC 2 cut(s) 1013, 1298
EcoO109I RGGNCCY 1 cut(s) 1013
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 836
EcoRV GATATC 2 cut(s) 228, 828
EcoT14I CCWWGG 2 cut(s) 1017, 1117
ErhI CCWWGG 2 cut(s) 1017, 1117
FaeI CATG 4 cut(s) 26, 224, 1021, 1267
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 2 cut(s) 503, 877
FatI CATG 4 cut(s) 22, 220, 1017, 1263
FauNDI CATATG 2 cut(s) 856, 950
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 4 cut(s) 154, 160, 773, 1106
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 3 cut(s) 129, 587, 1321
GlaI GCGC 2 cut(s) 164, 166
GluI GCNGC 1 cut(s) 271
GsaI CCCAGC 2 cut(s) 437, 703
HaeIII GGCC 1 cut(s) 765
HgaI GACGC 2 cut(s) 82, 1107
HhaI GCGC 2 cut(s) 165, 167
Hin1II CATG 4 cut(s) 26, 224, 1021, 1267
Hin6I GCGC 2 cut(s) 163, 165
HinP1I GCGC 2 cut(s) 163, 165
HincII GTYRAC 3 cut(s) 217, 286, 1287
HindII GTYRAC 3 cut(s) 217, 286, 1287
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 7 cut(s) 84, 247, 313, 337, 491, 865, 985
HphI GGTGA 2 cut(s) 818, 1232
Hpy166II GTNNAC 7 cut(s) 217, 286, 628, 778, 993, 1124, 1287
Hpy188I TCNGA 3 cut(s) 336, 342, 399
Hpy188III TCNNGA 4 cut(s) 661, 982, 1169, 1264
Hpy8I GTNNAC 7 cut(s) 217, 286, 628, 778, 993, 1124, 1287
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 4 cut(s) 233, 952, 1016, 1226
HpyCH4III ACNGT 2 cut(s) 11, 202
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 5 cut(s) 22, 111, 273, 371, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 838
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 4 cut(s) 26, 224, 1021, 1267
HspAI GCGC 2 cut(s) 163, 165
Kzo9I GATC 2 cut(s) 550, 657
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 3 cut(s) 69, 176, 1269
MaeI CTAG 3 cut(s) 129, 587, 1321
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 413, 428, 1220
MalI GATC 2 cut(s) 552, 659
MboI GATC 2 cut(s) 550, 657
MboII GAAGA 5 cut(s) 220, 248, 449, 1133, 1172
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 30
MluI ACGCGT 1 cut(s) 1099
MlyI GAGTC 3 cut(s) 485, 859, 994
MroXI GAANNNNTTC 1 cut(s) 1164
MseI TTAA 4 cut(s) 264, 318, 615, 1212
MslI CAYNNNNRTG 2 cut(s) 381, 1037
MspA1I CMGCKG 1 cut(s) 715
MspR9I CCNGG 1 cut(s) 838
MunI CAATTG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 838
MvnI CGCG 2 cut(s) 165, 1101
MwoI GCNNNNNNNGC 1 cut(s) 838
NcoI CCATGG 1 cut(s) 1017
NdeI CATATG 2 cut(s) 856, 950
NdeII GATC 2 cut(s) 550, 657
NlaIII CATG 4 cut(s) 26, 224, 1021, 1267
NlaIV GGNNCC 2 cut(s) 764, 1015
NmuCI GTSAC 1 cut(s) 1220
NspI RCATGY 1 cut(s) 26
PagI TCATGA 1 cut(s) 1263
PauI GCGCGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 1164
PfeI GAWTC 4 cut(s) 84, 247, 313, 337
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 3 cut(s) 485, 859, 993
PpsI GAGTC 3 cut(s) 485, 859, 993
PpuMI RGGWCCY 1 cut(s) 1013
Psp1406I AACGTT 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 1013
Psp6I CCWGG 1 cut(s) 836
PspFI CCCAGC 2 cut(s) 433, 699
PspGI CCWGG 1 cut(s) 836
PspN4I GGNNCC 2 cut(s) 764, 1015
PspPI GGNCC 3 cut(s) 763, 1013, 1298
PspPPI RGGWCCY 1 cut(s) 1013
PteI GCGCGC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 715
RsaI GTAC 2 cut(s) 100, 1123
RsaNI GTAC 2 cut(s) 99, 1122
RseI CAYNNNNRTG 2 cut(s) 381, 1037
SaqAI TTAA 4 cut(s) 264, 318, 615, 1212
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 550, 657
Sau96I GGNCC 3 cut(s) 763, 1013, 1298
SchI GAGTC 3 cut(s) 485, 859, 994
ScrFI CCNGG 1 cut(s) 838
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 3 cut(s) 69, 176, 1269
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 2 cut(s) 1013, 1298
SmiMI CAYNNNNRTG 2 cut(s) 381, 1037
SmlI CTYRAG 2 cut(s) 867, 1176
SmoI CTYRAG 2 cut(s) 867, 1176
SsiI CCGC 2 cut(s) 326, 1181
SspI AATATT 1 cut(s) 734
SspMI CTAG 3 cut(s) 129, 587, 1321
StyD4I CCNGG 1 cut(s) 836
StyI CCWWGG 2 cut(s) 1017, 1117
TaaI ACNGT 2 cut(s) 11, 202
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 245, 945
TfiI GAWTC 4 cut(s) 84, 247, 313, 337
Tru1I TTAA 4 cut(s) 264, 318, 615, 1212
Tru9I TTAA 4 cut(s) 264, 318, 615, 1212
TscAI CASTG 3 cut(s) 532, 888, 1044
TseFI GTSAC 1 cut(s) 1220
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 1220
TspDTI ATGAA 8 cut(s) 249, 775, 783, 825, 936, 977, 1139, 1208
TspGWI ACGGA 4 cut(s) 166, 901, 978, 1198
TspRI CASTG 3 cut(s) 532, 888, 1044
VpaK11BI GGWCC 2 cut(s) 1013, 1298
XapI RAATTY 3 cut(s) 48, 446, 530
XceI RCATGY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 2 cut(s) 1015, 1056
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 1164
XspI CTAG 3 cut(s) 129, 587, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.