Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004015

Physical Location & Seq

Genomic Coordinates Reverse (-)

68861421 .. 68861934

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG488200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGATCTTCACATTTTACAAGGCACAAGGTATCTCAATGGGTTCATCTCTGGTGGAAAAGGATAAGCTAGAACTTGCTACATCACTCATTGCAAAGGCCAAGGCAAAGGGAGTGTCTCTTTTGCTACTCACTGATGTCATAATTGCAGACAAATTTGCTCCTGATGCAAACAGCAAGATTGTTCCAGCTTCAAGCATCCCTGATGGGTGGATGGGATTGGATATTGGACCAGACTCTATTAAGACATTCAATGATGCACTTGATACCACTCAAACCGTCATTTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PGK

Protein Analysis

96

Amino Acids

10.27

Weight (kDa)

4.81

Isoelectric Point (pI)

19.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGK	PF00162	1 - 96	4.4e-26	Phosphoglycerate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56190 AT1G56190 AT3G12780
fragaria_vesca	FvH4_3g14960
malus_domestica	MD05G1234000.v1.1 MD10G1210500.v1.1
prunus_persica	Prupe.4G133800_v2.0.a1
pyrus_communis	pycom05g21140 pycom10g17860
rosa_chinensis	RchiOBHm_Chr5g0024541 RchiOBHm_Chr6g0271801
rosa_laevigata	RLG00000032805
rosa_multiflora	Rmu_sc0000761.1_g000001 Rmu_sc0002482.1_g000033 Rmu_sc0002700.1_g000004 Rmu_sc0003127.1_g000018 Rmu_sc0042122.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054700
rosa_rugosa	Rorug01G0081900 Rorug04G0200600 Rorug04G0200700 Rorug05G0083800 Rorug05G0113200 Rorug06G0055900
rosa_samantha	Rh5BG172900 Rh5DG174600 Rh5DG266800 Rh6DG474000 Rh7AG488200
rosa_wichuraiana	Rw1G008780 Rw5G015860 Rw5G023970 Rw5G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	192, 250
AluBI	AGCT	2 cut(s)	67, 188
AluI	AGCT	2 cut(s)	67, 188
Alw26I	GTCTC	1 cut(s)	120
AoxI	GGCC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	152
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BccI	CCATC	2 cut(s)	197, 205
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmsI	GCATC	3 cut(s)	154, 204, 244
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	195, 216
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	195, 216
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	195, 216
BtsIMutI	CAGTG	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	227
CviJI	RGCY	3 cut(s)	67, 98, 188
CviKI_1	RGCY	3 cut(s)	67, 98, 188
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaiI	YATR	1 cut(s)	140
FokI	GGATG	2 cut(s)	182, 223
FspBI	CTAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	233
Hpy188III	TCNNGA	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	92, 146, 167, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	35, 174, 198, 213, 243
LweI	GCATC	3 cut(s)	154, 204, 244
MaeI	CTAG	1 cut(s)	68
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MluCI	AATT	2 cut(s)	141, 152
MlyI	GAGTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	1 cut(s)	3
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	227
SetI	ASST	3 cut(s)	31, 69, 190
SfaNI	GCATC	3 cut(s)	154, 204, 244
SinI	GGWCC	1 cut(s)	227
Sse9I	AATT	2 cut(s)	141, 152
SspMI	CTAG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	2 cut(s)	141, 152
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.