Rorug05G0083800

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004015
Physical Location & Seq
Reverse (-)
7237224 .. 7238584
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0083800.1

Sequence Viewer

Length: 780 bp
ATGGGTGGAATTGTGTATCAGTATCACTCTGTGCTTCGCTTTCCGGCATTCTTATCTTTCAGTAAGCAGCCCAAGCTGGGAAAACCTATTTTCTCACTCAAAGACATTGCAGATGTGTCTTCACCGTTTGAGAGGAAGGGGCTGAAGTTAACTGTGTCCTGTGTTGGATCTGATCAAGGAAGCGGAAGAGGTCAATCTTCTAGGAGAAGTTCAGGTTCAGGAAGAACAAGGAAAAATGATGAAACTAAGAAACCTCGAGGTGGGAGAAAGTCCAAGTCATCTAACCAGGAAGAGATCATTTCTCTGTTTAGGCGGATACAGTCTTCGATCTCAAAGGAAGTAGACTCTGTAGATACTAAGAAGATAAAGTCCAATGAATCGGAAGAGAAGCCGCCCTCGGCTGAGTCAATTCTTAGGGTTCTTCAAGGTGGATCAACAAAGCAAAGAGAAGAAGCTAACCAGGAAGGAGAAAAGGTTGATATGAAGGAGCAGCAAATACAGGCTAATCTATCAGTTACAGACTTCAAGTTAACGCGGCCACCATCCAAATTCGTGAAGAGGTCTCCAATTCCGTCTTCATCAAACAATTCAAGCCCACCACGAGAGCTTCTTGAGATGAAAAATGGAGCATCACTTGCCACTGCTGGAACCAAAGAGTTAAAGTTGGAAAGAGTAGAAGAAATGAAACTCCCTGAGCTGAAAGAACTGGCAAAGTCTAGGGGGATGGTAGGTTACTCAAAACTCAAAAAGAGGGAGCTTGTAGAACTGTTGAAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

259

Amino Acids

28.74

Weight (kDa)

9.97

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 226 - 258 1.5e-06 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 255
AccI GTMKAC 1 cut(s) 342
AccII CGCG 1 cut(s) 535
AciI CCGC 4 cut(s) 183, 313, 392, 535
AclWI GGATC 2 cut(s) 175, 439
AcoI YGGCCR 1 cut(s) 536
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 164
AdeI CACNNNGTG 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 77, 260
AgsI TTSAA 4 cut(s) 425, 526, 591, 772
AjnI CCWGG 2 cut(s) 285, 459
AjuI GAANNNNNNNTTGG 2 cut(s) 559, 591
AluBI AGCT 5 cut(s) 76, 455, 607, 697, 757
AluI AGCT 5 cut(s) 76, 455, 607, 697, 757
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 2 cut(s) 175, 439
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 1 cut(s) 536
ApeKI GCWGC 2 cut(s) 67, 490
ApoI RAATTY 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 255
BauI CACGAG 1 cut(s) 600
BbsI GAAGAC 3 cut(s) 111, 315, 567
BbvI GCAGC 2 cut(s) 79, 502
BccI CCATC 2 cut(s) 550, 718
BciT130I CCWGG 2 cut(s) 287, 461
BciVI GTATCC 1 cut(s) 309
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 2 cut(s) 201, 717
BfmI CTRYAG 1 cut(s) 348
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 4 cut(s) 68, 392, 491, 536
BlsI GCNGC 4 cut(s) 69, 393, 492, 537
Bme1390I CCNGG 2 cut(s) 287, 461
BmeT110I CYCGRG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 2 cut(s) 287, 461
BmsI GCATC 1 cut(s) 638
BpiI GAAGAC 3 cut(s) 111, 315, 567
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 396
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 260
Bse1I ACTGG 1 cut(s) 711
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 2 cut(s) 287, 461
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 542, 729
BseLI CCNNNNNNNGG 2 cut(s) 77, 260
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 393, 684
BseNI ACTGG 1 cut(s) 711
BseXI GCAGC 2 cut(s) 79, 502
BseYI CCCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 535
BshFI GGCC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 77, 260
BsmAI GTCTC 1 cut(s) 567
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 1 cut(s) 538
Bso31I GGTCTC 1 cut(s) 567
BsoBI CYCGRG 1 cut(s) 255
Bsp143I GATC 5 cut(s) 167, 172, 294, 327, 431
BspACI CCGC 4 cut(s) 183, 313, 392, 535
BspANI GGCC 1 cut(s) 538
BspCNI CTCAG 2 cut(s) 394, 685
BspFNI CGCG 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 649
BspPI GGATC 2 cut(s) 175, 439
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 711
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 5 cut(s) 167, 172, 294, 327, 431
BssSI CACGAG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 287, 461
Bst4CI ACNGT 4 cut(s) 126, 154, 321, 768
Bst6I CTCTTC 4 cut(s) 181, 285, 378, 551
BstAPI GCANNNNNTGC 1 cut(s) 635
BstDEI CTNAG 5 cut(s) 246, 357, 402, 413, 693
BstF5I GGATG 2 cut(s) 542, 729
BstFNI CGCG 1 cut(s) 535
BstKTI GATC 5 cut(s) 170, 175, 297, 330, 434
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 5 cut(s) 167, 172, 294, 327, 431
BstMWI GCNNNNNNNGC 2 cut(s) 73, 635
BstNI CCWGG 2 cut(s) 287, 461
BstSCI CCNGG 2 cut(s) 285, 459
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 1 cut(s) 535
BstV1I GCAGC 2 cut(s) 79, 502
BstV2I GAAGAC 3 cut(s) 111, 315, 567
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 1 cut(s) 538
BtsCI GGATG 2 cut(s) 542, 729
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 639
DdeI CTNAG 5 cut(s) 246, 357, 402, 413, 693
DpnI GATC 5 cut(s) 169, 174, 296, 329, 433
DpnII GATC 5 cut(s) 167, 172, 294, 327, 431
DraIII CACNNNGTG 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 536
Eam1104I CTCTTC 4 cut(s) 181, 285, 378, 551
EarI CTCTTC 4 cut(s) 181, 285, 378, 551
EciI GGCGGA 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 285, 459
FaiI YATR 1 cut(s) 482
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 68, 392, 491, 536
FokI GGATG 2 cut(s) 529, 736
Fsp4HI GCNGC 4 cut(s) 68, 392, 491, 536
FspBI CTAG 2 cut(s) 201, 717
GluI GCNGC 4 cut(s) 68, 392, 491, 536
GsaI CCCAGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 538
HapII CCGG 1 cut(s) 44
HincII GTYRAC 2 cut(s) 150, 531
HindII GTYRAC 2 cut(s) 150, 531
HinfI GANTC 3 cut(s) 344, 377, 404
HpaI GTTAAC 2 cut(s) 150, 531
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 114
Hpy166II GTNNAC 3 cut(s) 150, 343, 531
Hpy188I TCNGA 2 cut(s) 172, 382
Hpy188III TCNNGA 3 cut(s) 219, 553, 611
Hpy8I GTNNAC 3 cut(s) 150, 343, 531
HpyAV CCTTC 3 cut(s) 130, 458, 478
HpyCH4III ACNGT 4 cut(s) 126, 154, 321, 768
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 635
HpyF3I CTNAG 5 cut(s) 246, 357, 402, 413, 693
Ksp22I TGATCA 1 cut(s) 172
KspAI GTTAAC 2 cut(s) 150, 531
Kzo9I GATC 5 cut(s) 167, 172, 294, 327, 431
LmnI GCTCC 3 cut(s) 487, 626, 754
Lsp1109I GCAGC 2 cut(s) 79, 502
LweI GCATC 1 cut(s) 638
MaeI CTAG 2 cut(s) 201, 717
MaeIII GTNAC 2 cut(s) 514, 731
MalI GATC 5 cut(s) 169, 174, 296, 329, 433
MboI GATC 5 cut(s) 167, 172, 294, 327, 431
MflI RGATCY 1 cut(s) 167
MluCI AATT 5 cut(s) 9, 408, 548, 567, 586
MlyI GAGTC 2 cut(s) 338, 413
MmeI TCCRAC 2 cut(s) 145, 645
MnlI CCTC 7 cut(s) 126, 182, 251, 264, 406, 552, 744
MseI TTAA 3 cut(s) 149, 530, 659
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 287, 461
Mva1269I GAATGC 1 cut(s) 47
MvaI CCWGG 2 cut(s) 287, 461
MvnI CGCG 1 cut(s) 535
MwoI GCNNNNNNNGC 2 cut(s) 73, 635
NdeII GATC 5 cut(s) 167, 172, 294, 327, 431
NlaIV GGNNCC 1 cut(s) 649
NmeAIII GCCGAG 1 cut(s) 377
PaeR7I CTCGAG 1 cut(s) 255
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 4 cut(s) 69, 393, 492, 537
PleI GAGTC 2 cut(s) 338, 412
PpsI GAGTC 2 cut(s) 338, 412
Psp6I CCWGG 2 cut(s) 285, 459
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 2 cut(s) 285, 459
PspN4I GGNNCC 1 cut(s) 649
PspXI VCTCGAGB 1 cut(s) 255
PsuI RGATCY 1 cut(s) 167
SaqAI TTAA 3 cut(s) 149, 530, 659
SatI GCNGC 4 cut(s) 68, 392, 491, 536
Sau3AI GATC 5 cut(s) 167, 172, 294, 327, 431
SchI GAGTC 2 cut(s) 338, 413
ScrFI CCNGG 2 cut(s) 287, 461
SfaNI GCATC 1 cut(s) 638
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 255, 611
SmoI CTYRAG 2 cut(s) 255, 611
Sse9I AATT 5 cut(s) 9, 408, 548, 567, 586
SsiI CCGC 4 cut(s) 183, 313, 392, 535
SspMI CTAG 2 cut(s) 201, 717
StyD4I CCNGG 2 cut(s) 285, 459
TaaI ACNGT 4 cut(s) 126, 154, 321, 768
TaqI TCGA 2 cut(s) 256, 326
TasI AATT 5 cut(s) 9, 408, 548, 567, 586
TauI GCSGC 2 cut(s) 394, 538
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 3 cut(s) 149, 530, 659
Tru9I TTAA 3 cut(s) 149, 530, 659
TscAI CASTG 1 cut(s) 646
TseI GCWGC 2 cut(s) 67, 490
TspDTI ATGAA 6 cut(s) 255, 390, 497, 567, 632, 698
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 1 cut(s) 646
XapI RAATTY 1 cut(s) 548
XhoI CTCGAG 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 201, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.