Rorug04G0200600

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004015
Physical Location & Seq
Forward (+)
34841398 .. 34842274
877 bp
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UTR
Exon/CDS
Intron
Rorug04G0200600.1

Sequence Viewer

Length: 444 bp
ATGTCCAAACTCAGAGACAATCCCATCTTAATCTTGTATCTTGGCCTCCTCCTAATCCTTACCCATTTCTCAATCTGCAATGGGGATTCAGTTCTTGACCTCAGTGCACTCAAAGGAAGTGAAATTGATGTCAAGGTTGGGGACTTCATAACAGAGCCAGAGATGGACTCAGAGATAAGTAGAAGAGTGCTAGCGATGCAGAAGAAGTACATAAGCTATGAGACACTGAGGAGGGACTTGGTTCCTTGTGCAAGGCCAGGTGCTTCATACTACAATTGCCATGCTGTGGCCAACCCTTATAATAGAGGCTGTGAGGTCATCACAGGATGTAGAGATGGGGTTGGATATTCTCTTATGAGGAAGACAGGTAATGTGGGTGGAGGACAGACGGATTGGAGCAATGGACTTAAAAGGGAAGACAAAACAAGTTCTTGGAAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

8.2

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RALF PF05498 52 - 111 8.1e-27 Rapid ALkalinization Factor (RALF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB7I CCANNNNNTGG 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 288
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 286
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 2 cut(s) 9, 215
Alw44I GTGCAC 1 cut(s) 105
AoxI GGCC 3 cut(s) 43, 254, 288
ApaLI GTGCAC 1 cut(s) 105
AsuNHI GCTAGC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 109
BalI TGGCCA 1 cut(s) 290
BbsI GAAGAC 2 cut(s) 368, 423
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 3 cut(s) 32, 157, 329
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 9, 215
BfaI CTAG 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 186
BmtI GCTAGC 1 cut(s) 194
BpiI GAAGAC 2 cut(s) 368, 423
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse3DI GCAATG 2 cut(s) 85, 406
BseBI CCWGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 2 cut(s) 85, 406
BseMII CTCAG 4 cut(s) 25, 115, 183, 218
BseRI GAGGAG 2 cut(s) 38, 244
BseSI GKGCMC 1 cut(s) 109
BshFI GGCC 3 cut(s) 45, 256, 290
BsiHKAI GWGCWC 1 cut(s) 109
BslFI GGGAC 2 cut(s) 155, 248
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 2 cut(s) 9, 215
BsmFI GGGAC 2 cut(s) 155, 248
BsnI GGCC 3 cut(s) 45, 256, 290
Bsp1286I GDGCHC 1 cut(s) 109
BspANI GGCC 3 cut(s) 45, 256, 290
BspCNI CTCAG 4 cut(s) 24, 114, 182, 219
BspLI GGNNCC 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 85, 406
Bst2UI CCWGG 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 4 cut(s) 11, 101, 169, 227
BstF5I GGATG 1 cut(s) 332
BstMAI GTCTC 2 cut(s) 9, 215
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 109
BstV2I GAAGAC 2 cut(s) 368, 423
BsuRI GGCC 3 cut(s) 45, 256, 290
BtgZI GCGATG 1 cut(s) 209
BtsCI GGATG 1 cut(s) 332
BtsIMutI CAGTG 2 cut(s) 109, 224
Cac8I GCNNGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 281
CviJI RGCY 6 cut(s) 45, 157, 216, 256, 290, 309
CviKI_1 RGCY 6 cut(s) 45, 157, 216, 256, 290, 309
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 4 cut(s) 11, 101, 169, 227
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 284
FaiI YATR 7 cut(s) 149, 212, 219, 268, 282, 300, 356
FaqI GGGAC 2 cut(s) 155, 248
FatI CATG 1 cut(s) 280
FokI GGATG 1 cut(s) 339
FspBI CTAG 1 cut(s) 191
HaeIII GGCC 3 cut(s) 45, 256, 290
Hin1II CATG 1 cut(s) 284
HinfI GANTC 2 cut(s) 86, 167
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 2 cut(s) 14, 172
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 107
HpyCH4V TGCA 4 cut(s) 78, 107, 199, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 4 cut(s) 11, 101, 169, 227
Hsp92II CATG 1 cut(s) 284
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 5 cut(s) 171, 243, 270, 309, 351
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 191
MboII GAAGA 4 cut(s) 195, 214, 373, 428
MfeI CAATTG 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 2 cut(s) 123, 274
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 9 cut(s) 56, 59, 110, 222, 225, 299, 307, 351, 374
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 2 cut(s) 29, 408
Msp20I TGGCCA 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 258
MunI CAATTG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 196
NheI GCTAGC 1 cut(s) 190
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 286
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PsiI TTATAA 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 243
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 29, 408
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 109
SetI ASST 6 cut(s) 102, 138, 218, 262, 318, 370
SfaNI GCATC 1 cut(s) 186
Sse9I AATT 2 cut(s) 123, 274
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 256
TasI AATT 2 cut(s) 123, 274
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 29, 408
Tru9I TTAA 2 cut(s) 29, 408
TscAI CASTG 2 cut(s) 109, 231
TspDTI ATGAA 2 cut(s) 136, 255
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 109, 231
Van91I CCANNNNNTGG 1 cut(s) 286
VneI GTGCAC 1 cut(s) 105
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.