Rw5G023970

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004015
Physical Location & Seq
Reverse (-)
34027638 .. 34029190
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023970.1

Sequence Viewer

Length: 453 bp
ATGTTGATGTTGCATGATGAAGACTTGAAAGGATTACTAATTCAAAGAACACAGGTTATGAAGGCTGAAGATTCTATTGGTCTAGAAGTAGAAAAGCTGGCGGCTTCACTTCGTGATGGTGGTGTCCTTCTTCTTGAAAATGTGAGGTTTTACAAAGAGGAGGAGAAGAACGATCCTGAGCATGCAAAGAAGCTCGCCTCTGTAGCTGATCTTTTTGTCAATGATGCATTCGGAACTGCACATAGAACCCATGCTTCAACTGAGGGTGTAACAAAATTCTTAAGGCCATCTGTAGCTGGTTTTCTTTTGCAGAAGGTCTCATCCAAGATTGGAGTGATCGAGTCATTGTTAGAGAAGGTTGATTACTTAATTCTTGGTGGAGCTAGGAATGATCTTCACATTTTACAAGGCACAAGGTATCTCAGTGGGTTCATCTCTGGTGGAAAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

6.2

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 5 - 105 1.4e-32 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 113
AflII CTTAAG 1 cut(s) 280
AgsI TTSAA 4 cut(s) 28, 44, 137, 258
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 5 cut(s) 97, 193, 206, 296, 383
AluI AGCT 5 cut(s) 97, 193, 206, 296, 383
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 275
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 2 cut(s) 110, 295
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 83, 384
BfmI CTRYAG 2 cut(s) 201, 291
BfrI CTTAAG 1 cut(s) 280
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 322
BseGI GGATG 1 cut(s) 320
BseMII CTCAG 3 cut(s) 168, 252, 436
BseRI GAGGAG 2 cut(s) 173, 176
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 322
Bsp143I GATC 4 cut(s) 172, 208, 336, 391
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 3 cut(s) 169, 253, 435
BspPI GGATC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 322
BssMI GATC 4 cut(s) 172, 208, 336, 391
BstAFI CTTAAG 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 99, 183, 195
BstDEI CTNAG 3 cut(s) 177, 261, 422
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 4 cut(s) 175, 211, 339, 394
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 4 cut(s) 172, 208, 336, 391
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 185
BstSFI CTRYAG 2 cut(s) 201, 291
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 3 cut(s) 99, 183, 195
CviAII CATG 3 cut(s) 14, 182, 251
CviJI RGCY 8 cut(s) 65, 97, 104, 193, 206, 286, 296, 383
CviKI_1 RGCY 8 cut(s) 65, 97, 104, 193, 206, 286, 296, 383
DdeI CTNAG 3 cut(s) 177, 261, 422
DpnI GATC 4 cut(s) 174, 210, 338, 393
DpnII GATC 4 cut(s) 172, 208, 336, 391
DraIII CACNNNGTG 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 3 cut(s) 17, 185, 254
FaiI YATR 5 cut(s) 15, 59, 183, 243, 252
FatI CATG 3 cut(s) 13, 181, 250
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 2 cut(s) 83, 384
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 286
Hin1II CATG 3 cut(s) 17, 185, 254
HinfI GANTC 2 cut(s) 71, 341
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 4 cut(s) 83, 113, 134, 176
HpyAV CCTTC 4 cut(s) 55, 137, 307, 349
HpyCH4V TGCA 5 cut(s) 13, 185, 227, 239, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 3 cut(s) 177, 261, 422
Hsp92II CATG 3 cut(s) 17, 185, 254
Kzo9I GATC 4 cut(s) 172, 208, 336, 391
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 5 cut(s) 38, 83, 189, 282, 423
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 83, 384
MaeIII GTNAC 1 cut(s) 268
MalI GATC 4 cut(s) 174, 210, 338, 393
MboI GATC 4 cut(s) 172, 208, 336, 391
MboII GAAGA 5 cut(s) 32, 80, 122, 178, 386
MluCI AATT 3 cut(s) 39, 275, 369
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 5 cut(s) 138, 151, 154, 208, 256
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 2 cut(s) 281, 368
MspCI CTTAAG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 4 cut(s) 172, 208, 336, 391
NlaIII CATG 3 cut(s) 17, 185, 254
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 1 cut(s) 185
PaeI GCATGC 1 cut(s) 185
PctI GAATGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
SaqAI TTAA 2 cut(s) 281, 368
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 4 cut(s) 172, 208, 336, 391
SchI GAGTC 1 cut(s) 350
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 2 cut(s) 201, 291
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SphI GCATGC 1 cut(s) 185
Sse9I AATT 3 cut(s) 39, 275, 369
SsiI CCGC 1 cut(s) 101
SspMI CTAG 2 cut(s) 83, 384
TaqI TCGA 1 cut(s) 339
TasI AATT 3 cut(s) 39, 275, 369
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 281, 368
Tru9I TTAA 2 cut(s) 281, 368
TscAI CASTG 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 33, 74, 421
TspRI CASTG 1 cut(s) 430
Vha464I CTTAAG 1 cut(s) 280
XapI RAATTY 1 cut(s) 275
XbaI TCTAGA 1 cut(s) 82
XceI RCATGY 1 cut(s) 185
XspI CTAG 2 cut(s) 83, 384
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.