Rmu_sc0000761.1_g000001

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000761.1
OG0004015
Physical Location & Seq
Reverse (-)
913 .. 4175
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000761.1_g000001.1.cds

Sequence Viewer

Length: 1260 bp
atggcctctgcctccgcaccaacaactctctccctcctccaatccacaaccgcctcctccacttcccgcgccgcccgcgcctccccctcccatgtctccctcccctcctccctcaaacccaccatccgccggctgggtttcgccgccgccgaccccctcttcgccttccaagttgccgccaaagtcaggtcctttggctccggcaaggccgtcaggggcgtcgtggccatggccaagaagagcgttggtgacttgaccgaggctgatttgaaggggaagaaggtgtttgtgagagctgacttgaatgtgcctttggatgatagccagaagattactgatgatactagaataagggcggctattcctactattaagtatttgattgagaagggggctaaagtcattctttctagccatttgggacgaccaaaaggtgtgaccccaaagtttagcttggcacctcttgtacctcggctgtctgaacttcttggccttcaggtcgtgaaggctgaagactctattggtccagaagtagaaaagctggagctcgactatcttgttggagcagtatcaaacccaaaaaagccatttgcagccattgttggtggttcgaaggtctcatccaagattggagtgatcgagtcgctgttagagaaggttgattacttaattcttggtggaggaatgatcttcacattttacaaggcacagggtatctcagtgggttcatctctggtggaagaggataagctagaacttgctacatcactcattgcaaaggccaaggcgaagggagtgtctcttttgctacccactgatgtcgtaattgcagacaaatttgctcctgatgcaaacagcaagattgttccagcttcaagcatccctgacgggtggatgggattggatattggaccagactctattaagacattcaatgatgcacttgataccactcaaaccataatttggaacggaccaatgggagtgtttgagtttgacaagtttgcagtaggaacagaggctattgcaaagaagcttgcagagcttagtggcaagggagtgacaaccatcatcggaggtggagactcagttgcggctgtggagaaagtaggagttgctagtgtgatgagccacatatcaactggcggtggtgctagtttggagttgttggaaggcaaagaacttcctggtgtacttgctcttgatgaagccgttccagttcctgtgttagattatgaagaggaaaatggaagattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

419

Amino Acids

43.68

Weight (kDa)

6.88

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 457
AccB7I CCANNNNNTGG 1 cut(s) 966
AccII CGCG 2 cut(s) 69, 78
AcoI YGGCCR 2 cut(s) 225, 231
AcsI RAATTY 1 cut(s) 836
AcuI CTGAAG 2 cut(s) 479, 531
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 468, 1194
AfiI CCNNNNNNNGG 4 cut(s) 129, 133, 186, 966
AgsI TTSAA 4 cut(s) 271, 304, 876, 934
AjnI CCWGG 1 cut(s) 1186
AjuI GAANNNNNNNTTGG 4 cut(s) 296, 328, 504, 536
AluBI AGCT 8 cut(s) 296, 453, 541, 547, 751, 872, 1036, 1045
AluI AGCT 8 cut(s) 296, 453, 541, 547, 751, 872, 1036, 1045
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 4 cut(s) 100, 622, 804, 1077
AlwNI CAGNNNCTG 1 cut(s) 1223
AoxI GGCC 6 cut(s) 3, 207, 225, 231, 490, 780
ApeKI GCWGC 1 cut(s) 593
ApoI RAATTY 1 cut(s) 836
ArsI GACNNNNNNTTYG 4 cut(s) 143, 175, 782, 814
Asp700I GAANNNNTTC 1 cut(s) 1212
AspLEI GCGC 2 cut(s) 71, 80
AspS9I GGNCC 4 cut(s) 189, 524, 911, 974
AsuHPI GGTGA 1 cut(s) 260
AsuII TTCGAA 1 cut(s) 611
AvaII GGWCC 4 cut(s) 189, 524, 911, 974
BalI TGGCCA 2 cut(s) 227, 233
BanI GGYRCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 549
BarI GAAGNNNNNNTAC 2 cut(s) 647, 679
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 605
BccI CCATC 3 cut(s) 131, 889, 1076
BceAI ACGGC 2 cut(s) 194, 1196
BciT130I CCWGG 1 cut(s) 1188
BcoDI GTCTC 4 cut(s) 100, 622, 804, 1077
BfaI CTAG 5 cut(s) 345, 411, 752, 1119, 1155
BisI GCNGC 7 cut(s) 72, 144, 147, 177, 357, 594, 1095
BlsI GCNGC 7 cut(s) 73, 145, 148, 178, 358, 595, 1096
Bme1390I CCNGG 1 cut(s) 1188
Bme18I GGWCC 4 cut(s) 189, 524, 911, 974
BmgT120I GGNCC 4 cut(s) 189, 524, 911, 974
BmiI GGNNCC 2 cut(s) 199, 459
BmrFI CCNGG 1 cut(s) 1188
BmsI GCATC 3 cut(s) 838, 888, 928
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 611
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 4 cut(s) 228, 258, 470, 783
BsaXI ACNNNNNCTCC 2 cut(s) 1074, 1104
Bsc4I CCNNNNNNNGG 4 cut(s) 129, 133, 186, 966
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 1147, 1217
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 1 cut(s) 1188
BseDI CCNNGG 4 cut(s) 228, 258, 470, 783
BseGI GGATG 5 cut(s) 123, 322, 620, 879, 900
BseLI CCNNNNNNNGG 4 cut(s) 129, 133, 186, 966
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 2 cut(s) 732, 1101
BseNI ACTGG 2 cut(s) 1147, 1217
BseRI GAGGAG 3 cut(s) 26, 46, 97
BseXI GCAGC 1 cut(s) 605
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 69, 78
BshFI GGCC 6 cut(s) 5, 209, 227, 233, 492, 782
BshNI GGYRCC 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 130, 201
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 4 cut(s) 129, 133, 186, 966
BsmAI GTCTC 4 cut(s) 100, 622, 804, 1077
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 6 cut(s) 5, 209, 227, 233, 492, 782
Bso31I GGTCTC 1 cut(s) 622
Bsp119I TTCGAA 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 2 cut(s) 636, 687
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 6 cut(s) 5, 209, 227, 233, 492, 782
BspCNI CTCAG 2 cut(s) 731, 1100
BspFNI CGCG 2 cut(s) 69, 78
BspLI GGNNCC 2 cut(s) 199, 459
BspQI GCTCTTC 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 771
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 2 cut(s) 1147, 1217
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 4 cut(s) 228, 258, 470, 783
BssMI GATC 2 cut(s) 636, 687
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 2 cut(s) 228, 783
Bst2UI CCWGG 1 cut(s) 1188
Bst6I CTCTTC 4 cut(s) 164, 233, 735, 1233
BstACI GRCGYC 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 3 cut(s) 76, 131, 1038
BstDEI CTNAG 3 cut(s) 718, 1046, 1087
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 5 cut(s) 123, 322, 620, 879, 900
BstFNI CGCG 2 cut(s) 69, 78
BstHHI GCGC 2 cut(s) 71, 80
BstKTI GATC 2 cut(s) 639, 690
BstMAI GTCTC 4 cut(s) 100, 622, 804, 1077
BstMBI GATC 2 cut(s) 636, 687
BstMWI GCNNNNNNNGC 4 cut(s) 75, 77, 848, 1042
BstNI CCWGG 1 cut(s) 1188
BstSCI CCNGG 1 cut(s) 1186
BstUI CGCG 2 cut(s) 69, 78
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 519
BsuRI GGCC 6 cut(s) 5, 209, 227, 233, 492, 782
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 5 cut(s) 123, 322, 620, 879, 900
BtsIMutI CAGTG 2 cut(s) 726, 813
Cac8I GCNNGC 3 cut(s) 76, 131, 1038
CaiI CAGNNNCTG 1 cut(s) 1223
CfoI GCGC 2 cut(s) 71, 80
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 4 cut(s) 189, 524, 911, 974
CseI GACGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 467, 1193
CviAII CATG 2 cut(s) 92, 229
CviQI GTAC 2 cut(s) 467, 1193
DdeI CTNAG 3 cut(s) 718, 1046, 1087
DpnI GATC 2 cut(s) 638, 689
DpnII GATC 2 cut(s) 636, 687
EaeI YGGCCR 2 cut(s) 225, 231
Eam1104I CTCTTC 4 cut(s) 164, 233, 735, 1233
EarI CTCTTC 4 cut(s) 164, 233, 735, 1233
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 547
Eco130I CCWWGG 2 cut(s) 228, 783
Eco24I GRGCYC 1 cut(s) 549
Eco31I GGTCTC 1 cut(s) 622
Eco47I GGWCC 4 cut(s) 189, 524, 911, 974
Eco53kI GAGCTC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 479, 531
EcoICRI GAGCTC 1 cut(s) 547
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 1186
EcoT14I CCWWGG 2 cut(s) 228, 783
EcoT38I GRGCYC 1 cut(s) 549
ErhI CCWWGG 2 cut(s) 228, 783
FaeI CATG 2 cut(s) 95, 232
FaiI YATR 5 cut(s) 93, 230, 962, 1136, 1236
FalI AAGNNNNNCTT 4 cut(s) 390, 422, 437, 469
FaqI GGGAC 1 cut(s) 435
FatI CATG 2 cut(s) 91, 228
FauI CCCGC 2 cut(s) 74, 83
Fnu4HI GCNGC 7 cut(s) 72, 144, 147, 177, 357, 594, 1095
FokI GGATG 5 cut(s) 110, 329, 607, 866, 907
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 7 cut(s) 72, 144, 147, 177, 357, 594, 1095
FspBI CTAG 5 cut(s) 345, 411, 752, 1119, 1155
GlaI GCGC 2 cut(s) 70, 79
GluI GCNGC 7 cut(s) 72, 144, 147, 177, 357, 594, 1095
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 563
HaeIII GGCC 6 cut(s) 5, 209, 227, 233, 492, 782
HapII CCGG 2 cut(s) 130, 201
HgaI GACGC 1 cut(s) 208
HhaI GCGC 2 cut(s) 71, 80
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 2 cut(s) 95, 232
Hin6I GCGC 2 cut(s) 69, 78
HinP1I GCGC 2 cut(s) 69, 78
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 4 cut(s) 515, 641, 917, 1085
HpaII CCGG 2 cut(s) 130, 201
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 1193
Hpy188I TCNGA 2 cut(s) 481, 1076
Hpy188III TCNNGA 4 cut(s) 502, 527, 845, 1202
Hpy8I GTNNAC 1 cut(s) 1193
Hpy99I CGWCG 1 cut(s) 224
HpyCH4V TGCA 8 cut(s) 593, 776, 830, 851, 941, 1007, 1028, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 77, 848, 1042
HpyF3I CTNAG 3 cut(s) 718, 1046, 1087
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 2 cut(s) 95, 232
HspAI GCGC 2 cut(s) 69, 78
KroI GCCGGC 1 cut(s) 129
KroNI GCCGGC 1 cut(s) 131
Kzo9I GATC 2 cut(s) 636, 687
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 4 cut(s) 203, 544, 563, 847
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 3 cut(s) 838, 888, 928
MaeI CTAG 5 cut(s) 345, 411, 752, 1119, 1155
MaeIII GTNAC 3 cut(s) 248, 436, 1060
MalI GATC 2 cut(s) 638, 689
MboI GATC 2 cut(s) 636, 687
MboII GAAGA 8 cut(s) 151, 250, 289, 340, 524, 682, 752, 1250
MhlI GDGCHC 1 cut(s) 549
MlsI TGGCCA 2 cut(s) 227, 233
MluCI AATT 4 cut(s) 669, 825, 836, 963
MluNI TGGCCA 2 cut(s) 227, 233
MlyI GAGTC 4 cut(s) 509, 650, 911, 1079
MmeI TCCRAC 2 cut(s) 541, 1149
Mox20I TGGCCA 2 cut(s) 227, 233
MroNI GCCGGC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 1212
MscI TGGCCA 2 cut(s) 227, 233
MseI TTAA 3 cut(s) 372, 668, 924
Msp20I TGGCCA 2 cut(s) 227, 233
MspI CCGG 2 cut(s) 130, 201
MspR9I CCNGG 1 cut(s) 1188
MvaI CCWGG 1 cut(s) 1188
MvnI CGCG 2 cut(s) 69, 78
MwoI GCNNNNNNNGC 4 cut(s) 75, 77, 848, 1042
NaeI GCCGGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 228
NdeII GATC 2 cut(s) 636, 687
NgoMIV GCCGGC 1 cut(s) 129
NlaIII CATG 2 cut(s) 95, 232
NlaIV GGNNCC 2 cut(s) 199, 459
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 3 cut(s) 248, 436, 1060
NspV TTCGAA 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 1212
PflMI CCANNNNNTGG 1 cut(s) 966
PkrI GCNGC 7 cut(s) 73, 145, 148, 178, 358, 595, 1096
PleI GAGTC 4 cut(s) 509, 649, 911, 1079
PpsI GAGTC 4 cut(s) 509, 649, 911, 1079
PpuMI RGGWCCY 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 1186
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 1186
PspN4I GGNNCC 2 cut(s) 199, 459
PspPI GGNCC 4 cut(s) 189, 524, 911, 974
PspPPI RGGWCCY 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 1223
RsaI GTAC 2 cut(s) 468, 1194
RsaNI GTAC 2 cut(s) 467, 1193
SacI GAGCTC 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 3 cut(s) 372, 668, 924
SatI GCNGC 7 cut(s) 72, 144, 147, 177, 357, 594, 1095
Sau3AI GATC 2 cut(s) 636, 687
Sau96I GGNCC 4 cut(s) 189, 524, 911, 974
SchI GAGTC 4 cut(s) 509, 650, 911, 1079
ScrFI CCNGG 1 cut(s) 1188
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 3 cut(s) 838, 888, 928
SfuI TTCGAA 1 cut(s) 611
SinI GGWCC 4 cut(s) 189, 524, 911, 974
Sse9I AATT 4 cut(s) 669, 825, 836, 963
SspMI CTAG 5 cut(s) 345, 411, 752, 1119, 1155
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 1186
StyI CCWWGG 2 cut(s) 228, 783
TaqI TCGA 3 cut(s) 549, 611, 639
TaqII GACCGA 1 cut(s) 272
TasI AATT 4 cut(s) 669, 825, 836, 963
TatI WGTACW 1 cut(s) 1192
TauI GCSGC 6 cut(s) 74, 146, 149, 179, 359, 1097
Tru1I TTAA 3 cut(s) 372, 668, 924
Tru9I TTAA 3 cut(s) 372, 668, 924
TscAI CASTG 2 cut(s) 726, 820
TseFI GTSAC 3 cut(s) 248, 436, 1060
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 3 cut(s) 248, 436, 1060
TspDTI ATGAA 3 cut(s) 717, 1221, 1251
TspGWI ACGGA 1 cut(s) 987
TspRI CASTG 2 cut(s) 726, 820
Van91I CCANNNNNTGG 1 cut(s) 966
VpaK11BI GGWCC 4 cut(s) 189, 524, 911, 974
XapI RAATTY 1 cut(s) 836
XcmI CCANNNNNNNNNTGG 2 cut(s) 130, 1139
XmnI GAANNNNTTC 1 cut(s) 1212
XspI CTAG 5 cut(s) 345, 411, 752, 1119, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.