pycom10g17860

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004015
Physical Location & Seq
Forward (+)
21042731 .. 21043798
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17860.1

Sequence Viewer

Length: 546 bp
ATGATTTTCACATTTTACAAAGCACAGGGTCTCTCAGTCGGTTCCTCTCTGGTGGAAGAAGATAAACTAGAACTTGCTACATCACTCATGGCAAAGGCCAAGGCAAAAGGAGTGTCTCTTTTGCTGCCTACTGATGTCGTAATCGCAGACAAGTTTGCCCCTGATGCAAACAGCAAGATTGTTCCAGCTTCAAGCATTCCTGACGGGTGGATGGGATTGGATATTGGTCCAGACTCTATTAAGACATTCAATGATGCACTGGATACCACTAAAACCATCATCTGGAATGGACCGATGGGAGTGTTTGAGTTTGATAAGTTCGCAGAAGGAACAGAGTCTGTTGCAAAGAAGCTTGCGGAACTTAGTGGGAAGGGAGTTACGACGATCATCGGAGGTGGAGATTCTGTTGCAGCCGTGGAGAAAGTAGGAGTCGCTAGTGTGATGAGCCACATATCAACTGGTGGTGGTGCGAGTTTGGAGTTGTTGGAAGGCAAAGAACTTCCTGGTGTACTTGCTCTCGACGAAGCCACACCAGTTCCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

182

Amino Acids

18.64

Weight (kDa)

4.57

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 1 - 165 8.6e-64 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AciI CCGC 1 cut(s) 356
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 192, 250
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 2 cut(s) 188, 352
AluI AGCT 2 cut(s) 188, 352
Alw26I GTCTC 2 cut(s) 35, 120
AlwNI CAGNNNCTG 2 cut(s) 338, 539
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 124, 410
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspS9I GGNCC 2 cut(s) 227, 290
AvaII GGWCC 2 cut(s) 227, 290
BbvI GCAGC 2 cut(s) 111, 422
BccI CCATC 3 cut(s) 205, 284, 289
BceAI ACGGC 1 cut(s) 398
BciT130I CCWGG 1 cut(s) 504
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 35, 120
BfaI CTAG 2 cut(s) 68, 435
BfuI GTATCC 1 cut(s) 256
BisI GCNGC 2 cut(s) 125, 411
BlsI GCNGC 2 cut(s) 126, 412
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 2 cut(s) 227, 290
BmgT120I GGNCC 2 cut(s) 227, 290
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 154, 244
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 99, 414
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 3 cut(s) 264, 463, 533
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 99, 414
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 3 cut(s) 264, 463, 533
BseXI GCAGC 2 cut(s) 111, 422
BshFI GGCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 35, 120
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 384
BspACI CCGC 1 cut(s) 356
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 35
BsrI ACTGG 3 cut(s) 264, 463, 533
BssECI CCNNGG 2 cut(s) 99, 414
BssMI GATC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 34, 362
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 216
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 2 cut(s) 35, 120
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 502
BstV1I GCAGC 2 cut(s) 111, 422
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 354
CaiI CAGNNNCTG 2 cut(s) 338, 539
Cfr13I GGNCC 2 cut(s) 227, 290
Csp6I GTAC 1 cut(s) 509
CviAII CATG 1 cut(s) 88
CviJI RGCY 6 cut(s) 98, 188, 352, 413, 447, 527
CviKI_1 RGCY 6 cut(s) 98, 188, 352, 413, 447, 527
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 2 cut(s) 34, 362
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 227, 290
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 91
FaiI YATR 2 cut(s) 89, 452
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 125, 411
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 125, 411
FspBI CTAG 2 cut(s) 68, 435
GluI GCNGC 2 cut(s) 125, 411
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 4 cut(s) 233, 335, 401, 429
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 1 cut(s) 392
Hpy188III TCNNGA 4 cut(s) 200, 230, 283, 518
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 2 cut(s) 385, 524
HpyAV CCTTC 3 cut(s) 320, 364, 482
HpyCH4V TGCA 4 cut(s) 167, 257, 344, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 2 cut(s) 34, 362
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 384
Lsp1109I GCAGC 2 cut(s) 111, 422
LweI GCATC 2 cut(s) 154, 244
MaeI CTAG 2 cut(s) 68, 435
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 2 cut(s) 68, 71
MlyI GAGTC 3 cut(s) 227, 344, 438
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 2 cut(s) 55, 386
MseI TTAA 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 1 cut(s) 384
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 43
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 401
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 2 cut(s) 126, 412
PleI GAGTC 3 cut(s) 227, 343, 437
PpsI GAGTC 3 cut(s) 227, 343, 437
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 2 cut(s) 227, 290
PstNI CAGNNNCTG 2 cut(s) 338, 539
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 125, 411
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 2 cut(s) 227, 290
SchI GAGTC 3 cut(s) 227, 344, 438
ScrFI CCNGG 1 cut(s) 504
SetI ASST 3 cut(s) 190, 354, 397
SfaNI GCATC 2 cut(s) 154, 244
SinI GGWCC 2 cut(s) 227, 290
SsiI CCGC 1 cut(s) 356
SspMI CTAG 2 cut(s) 68, 435
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 1 cut(s) 519
TaqII GACCGA 1 cut(s) 307
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 124, 410
TspRI CASTG 1 cut(s) 264
Van91I CCANNNNNTGG 1 cut(s) 282
VpaK11BI GGWCC 2 cut(s) 227, 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 2 cut(s) 68, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.