Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042122.1

Orthogroup ID

OG0004015

Physical Location & Seq

Genomic Coordinates Reverse (-)

396 .. 869

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042122.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggcctctgcctccgcaccaacaactctctccctcctccaatccacaaccgcctcctccacttcccgcgccgcccgcgcctccccctcccatgtctccctcccctcctccctcaaacccaccatccgccggctgggtttcgccgccgccgaccccctcttcgccttccaagttgccgccaaagtcaggtcctttggctccggcaaggccgtcaggggcgtcgtggccatggccaagaagagcgttggtgacttgaccgaggctgatttgaaggggaagaaggtgtttgtgagagctgacttgaatgtgcctttggatgatagccagaagattactgatgatactagaataagggcggctattcctactattaagtatttgattgagaagggggctaaagtcattctttctagccatttggtatgtgggttctctgtttttgatcaacttgtcaactttgattgctttgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PGK

Protein Analysis

157

Amino Acids

16.61

Weight (kDa)

9.95

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56190 AT1G56190 AT3G12780
fragaria_vesca	FvH4_3g14960
malus_domestica	MD05G1234000.v1.1 MD10G1210500.v1.1
prunus_persica	Prupe.4G133800_v2.0.a1
pyrus_communis	pycom05g21140 pycom10g17860
rosa_chinensis	RchiOBHm_Chr5g0024541 RchiOBHm_Chr6g0271801
rosa_laevigata	RLG00000032805
rosa_multiflora	Rmu_sc0000761.1_g000001 Rmu_sc0002482.1_g000033 Rmu_sc0002700.1_g000004 Rmu_sc0003127.1_g000018 Rmu_sc0042122.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054700
rosa_rugosa	Rorug01G0081900 Rorug04G0200600 Rorug04G0200700 Rorug05G0083800 Rorug05G0113200 Rorug06G0055900
rosa_samantha	Rh5BG172900 Rh5DG174600 Rh5DG266800 Rh6DG474000 Rh7AG488200
rosa_wichuraiana	Rw1G008780 Rw5G015860 Rw5G023970 Rw5G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	69, 78
AcoI	YGGCCR	2 cut(s)	225, 231
AcyI	GRCGYC	1 cut(s)	219
AfiI	CCNNNNNNNGG	3 cut(s)	129, 133, 186
AgsI	TTSAA	2 cut(s)	271, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	100
AoxI	GGCC	4 cut(s)	3, 207, 225, 231
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	2 cut(s)	71, 80
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	189
BalI	TGGCCA	2 cut(s)	227, 233
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	345, 411
BisI	GCNGC	5 cut(s)	72, 144, 147, 177, 357
BlsI	GCNGC	5 cut(s)	73, 145, 148, 178, 358
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 133, 186
Bse118I	RCCGGY	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	228, 258
BseGI	GGATG	2 cut(s)	123, 322
BseLI	CCNNNNNNNGG	3 cut(s)	129, 133, 186
BseRI	GAGGAG	3 cut(s)	26, 46, 97
BseYI	CCCAGC	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	69, 78
BshFI	GGCC	4 cut(s)	5, 209, 227, 233
BsiSI	CCGG	2 cut(s)	130, 201
BslI	CCNNNNNNNGG	3 cut(s)	129, 133, 186
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	4 cut(s)	5, 209, 227, 233
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	4 cut(s)	5, 209, 227, 233
BspFNI	CGCG	2 cut(s)	69, 78
BspLI	GGNNCC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	228, 258
BssMI	GATC	1 cut(s)	442
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	228
Bst6I	CTCTTC	2 cut(s)	164, 233
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	76, 131
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	123, 322
BstFNI	CGCG	2 cut(s)	69, 78
BstHHI	GCGC	2 cut(s)	71, 80
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 77
BstUI	CGCG	2 cut(s)	69, 78
BsuRI	GGCC	4 cut(s)	5, 209, 227, 233
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	123, 322
Cac8I	GCNNGC	2 cut(s)	76, 131
CfoI	GCGC	2 cut(s)	71, 80
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	1 cut(s)	208
CviAII	CATG	2 cut(s)	92, 229
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	225, 231
Eam1104I	CTCTTC	2 cut(s)	164, 233
EarI	CTCTTC	2 cut(s)	164, 233
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	95, 232
FaiI	YATR	3 cut(s)	93, 230, 424
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	2 cut(s)	91, 228
FauI	CCCGC	2 cut(s)	74, 83
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	5 cut(s)	72, 144, 147, 177, 357
FokI	GGATG	2 cut(s)	110, 329
Fsp4HI	GCNGC	5 cut(s)	72, 144, 147, 177, 357
FspBI	CTAG	2 cut(s)	345, 411
GlaI	GCGC	2 cut(s)	70, 79
GluI	GCNGC	5 cut(s)	72, 144, 147, 177, 357
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	4 cut(s)	5, 209, 227, 233
HapII	CCGG	2 cut(s)	130, 201
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	2 cut(s)	71, 80
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	95, 232
Hin6I	GCGC	2 cut(s)	69, 78
HinP1I	GCGC	2 cut(s)	69, 78
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HpaII	CCGG	2 cut(s)	130, 201
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	454
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	4 cut(s)	175, 265, 274, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 77
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	95, 232
HspAI	GCGC	2 cut(s)	69, 78
KroI	GCCGGC	1 cut(s)	129
KroNI	GCCGGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	442
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	6 cut(s)	119, 143, 172, 199, 214, 338
MaeI	CTAG	2 cut(s)	345, 411
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	4 cut(s)	151, 250, 289, 340
MlsI	TGGCCA	2 cut(s)	227, 233
MluNI	TGGCCA	2 cut(s)	227, 233
Mox20I	TGGCCA	2 cut(s)	227, 233
MroNI	GCCGGC	1 cut(s)	129
MscI	TGGCCA	2 cut(s)	227, 233
MseI	TTAA	1 cut(s)	372
Msp20I	TGGCCA	2 cut(s)	227, 233
MspI	CCGG	2 cut(s)	130, 201
MvnI	CGCG	2 cut(s)	69, 78
MwoI	GCNNNNNNNGC	2 cut(s)	75, 77
NaeI	GCCGGC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	442
NgoMIV	GCCGGC	1 cut(s)	129
NlaIII	CATG	2 cut(s)	95, 232
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	73, 145, 148, 178, 358
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	189
PspPPI	RGGWCCY	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	5 cut(s)	72, 144, 147, 177, 357
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	189
SetI	ASST	3 cut(s)	191, 285, 298
SinI	GGWCC	1 cut(s)	189
SspMI	CTAG	2 cut(s)	345, 411
StyI	CCWWGG	1 cut(s)	228
TaqII	GACCGA	1 cut(s)	272
TauI	GCSGC	5 cut(s)	74, 146, 149, 179, 359
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	2 cut(s)	130, 422
XspI	CTAG	2 cut(s)	345, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.