Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002482.1

Orthogroup ID

OG0004015

Physical Location & Seq

Genomic Coordinates Reverse (-)

118528 .. 121348

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002482.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ctgccgaaaaagcccctttcacctaacccttacatccaagctgaccacgattcagctttcgctaccaagccgctaccagtaccgttcgattttcccaaatctccgacctctgccgctcagaacattccggtgaagatttgttccgtacttcatttagcctggatgttgatgttgcatgatgaagacttgaaaggattactaattcaaagaacacaggttgtgaaggctgaagattctattggtctagaagtagaaaagctggcggcttcacttcgtgatggtggtgtccttcttcttgaaaatgtgaggttttacaaagaggaggagaagaacgatcctgagcatgcaaagaagctcgcctctgtagctgatctgtttgtcaatgatgcattcggaactgcacatagaacccatgcttcaactgagggtgtaacaaaattcttaaggccatctgtagctagttttcttttgcagaaggataagctagaactcgctacatcactcattgcaaaggccaaggcaaagggagtgtctcttttgctactcactgatgtcataattgcagacaaatttgctcctgatgcaaacagcaagattgttccagcttcaagcatccctgatgggtggatgggattggatattggaccagactctattaagacattcaatgatgcacttgataccactcaaaccgtcatttggaacggaccaatgggagtgtttgagtttgacaagtttacagtaggaacagagtgtggatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PGK

Protein Analysis

254

Amino Acids

27.61

Weight (kDa)

5.54

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56190 AT1G56190 AT3G12780
fragaria_vesca	FvH4_3g14960
malus_domestica	MD05G1234000.v1.1 MD10G1210500.v1.1
prunus_persica	Prupe.4G133800_v2.0.a1
pyrus_communis	pycom05g21140 pycom10g17860
rosa_chinensis	RchiOBHm_Chr5g0024541 RchiOBHm_Chr6g0271801
rosa_laevigata	RLG00000032805
rosa_multiflora	Rmu_sc0000761.1_g000001 Rmu_sc0002482.1_g000033 Rmu_sc0002700.1_g000004 Rmu_sc0003127.1_g000018 Rmu_sc0042122.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054700
rosa_rugosa	Rorug01G0081900 Rorug04G0200600 Rorug04G0200700 Rorug05G0083800 Rorug05G0113200 Rorug06G0055900
rosa_samantha	Rh5BG172900 Rh5DG174600 Rh5DG266800 Rh6DG474000 Rh7AG488200
rosa_wichuraiana	Rw1G008780 Rw5G015860 Rw5G023970 Rw5G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	116
AciI	CCGC	3 cut(s)	71, 114, 263
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	2 cut(s)	437, 569
AcuI	CTGAAG	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	81, 147
AfiI	CCNNNNNNNGG	1 cut(s)	699
AflII	CTTAAG	1 cut(s)	442
AgsI	TTSAA	6 cut(s)	190, 206, 299, 420, 609, 667
AjnI	CCWGG	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	8 cut(s)	41, 56, 259, 355, 368, 458, 484, 605
AluI	AGCT	8 cut(s)	41, 56, 259, 355, 368, 458, 484, 605
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	2 cut(s)	446, 513
ApoI	RAATTY	2 cut(s)	437, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspS9I	GGNCC	2 cut(s)	644, 707
AsuHPI	GGTGA	2 cut(s)	12, 142
AvaII	GGWCC	2 cut(s)	644, 707
BbsI	GAAGAC	1 cut(s)	189
BccI	CCATC	4 cut(s)	272, 457, 614, 622
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	3 cut(s)	245, 459, 485
BfmI	CTRYAG	2 cut(s)	363, 453
BfrI	CTTAAG	1 cut(s)	442
BisI	GCNGC	3 cut(s)	71, 114, 264
BlsI	GCNGC	3 cut(s)	72, 115, 265
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	2 cut(s)	644, 707
BmgT120I	GGNCC	2 cut(s)	644, 707
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	5 cut(s)	376, 571, 621, 661, 749
BpiI	GAAGAC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	5 cut(s)	33, 168, 612, 633, 764
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	3 cut(s)	131, 330, 414
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	335, 338
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	448, 515
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmAI	GTCTC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	448, 515
Bsp143I	GATC	2 cut(s)	334, 370
BspACI	CCGC	3 cut(s)	71, 114, 263
BspANI	GGCC	2 cut(s)	448, 515
BspCNI	CTCAG	3 cut(s)	130, 331, 415
BspPI	GGATC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	2 cut(s)	334, 370
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	84, 694, 742
BstAFI	CTTAAG	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	261, 345, 357
BstDEI	CTNAG	3 cut(s)	117, 339, 423
BstF5I	GGATG	5 cut(s)	33, 168, 612, 633, 764
BstKTI	GATC	2 cut(s)	337, 373
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	2 cut(s)	334, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 365, 581
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	2 cut(s)	363, 453
BstV2I	GAAGAC	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	448, 515
BtsCI	GGATG	5 cut(s)	33, 168, 612, 633, 764
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	3 cut(s)	261, 345, 357
Cfr13I	GGNCC	2 cut(s)	644, 707
Csp6I	GTAC	2 cut(s)	80, 146
CviAII	CATG	3 cut(s)	176, 344, 413
CviQI	GTAC	2 cut(s)	80, 146
DdeI	CTNAG	3 cut(s)	117, 339, 423
DpnI	GATC	2 cut(s)	336, 372
DpnII	GATC	2 cut(s)	334, 370
DraIII	CACNNNGTG	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	644, 707
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	3 cut(s)	179, 347, 416
FaiI	YATR	5 cut(s)	177, 345, 405, 414, 557
FatI	CATG	3 cut(s)	175, 343, 412
Fnu4HI	GCNGC	3 cut(s)	71, 114, 264
FokI	GGATG	4 cut(s)	20, 175, 599, 640
Fsp4HI	GCNGC	3 cut(s)	71, 114, 264
FspBI	CTAG	3 cut(s)	245, 459, 485
GluI	GCNGC	3 cut(s)	71, 114, 264
HaeIII	GGCC	2 cut(s)	448, 515
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	3 cut(s)	179, 347, 416
HinfI	GANTC	3 cut(s)	50, 233, 650
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	12, 142
Hpy166II	GTNNAC	1 cut(s)	738
Hpy188I	TCNGA	3 cut(s)	105, 120, 395
Hpy188III	TCNNGA	5 cut(s)	245, 275, 296, 338, 578
Hpy8I	GTNNAC	1 cut(s)	738
HpyAV	CCTTC	3 cut(s)	217, 299, 469
HpyCH4III	ACNGT	3 cut(s)	84, 694, 742
HpyCH4V	TGCA	9 cut(s)	175, 347, 389, 401, 472, 509, 563, 584, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 365, 581
HpyF3I	CTNAG	3 cut(s)	117, 339, 423
Hsp92II	CATG	3 cut(s)	179, 347, 416
Kzo9I	GATC	2 cut(s)	334, 370
LmnI	GCTCC	1 cut(s)	580
LweI	GCATC	5 cut(s)	376, 571, 621, 661, 749
MaeI	CTAG	3 cut(s)	245, 459, 485
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	2 cut(s)	336, 372
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	2 cut(s)	334, 370
MboII	GAAGA	5 cut(s)	145, 194, 242, 284, 340
MluCI	AATT	4 cut(s)	201, 437, 558, 569
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	6 cut(s)	118, 300, 313, 316, 370, 418
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	2 cut(s)	443, 657
MslI	CAYNNNNRTG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	442
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	160
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	10, 365, 581
NdeII	GATC	2 cut(s)	334, 370
NlaIII	CATG	3 cut(s)	179, 347, 416
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	50, 233
PkrI	GCNGC	3 cut(s)	72, 115, 265
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	644, 707
RsaI	GTAC	2 cut(s)	81, 147
RsaNI	GTAC	2 cut(s)	80, 146
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	443, 657
SatI	GCNGC	3 cut(s)	71, 114, 264
Sau3AI	GATC	2 cut(s)	334, 370
Sau96I	GGNCC	2 cut(s)	644, 707
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	1 cut(s)	160
SfaNI	GCATC	5 cut(s)	376, 571, 621, 661, 749
SfcI	CTRYAG	2 cut(s)	363, 453
SinI	GGWCC	2 cut(s)	644, 707
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	4 cut(s)	201, 437, 558, 569
SsiI	CCGC	3 cut(s)	71, 114, 263
SspMI	CTAG	3 cut(s)	245, 459, 485
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	3 cut(s)	84, 694, 742
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	201, 437, 558, 569
TauI	GCSGC	3 cut(s)	73, 116, 266
TfiI	GAWTC	2 cut(s)	50, 233
Tru1I	TTAA	2 cut(s)	443, 657
Tru9I	TTAA	2 cut(s)	443, 657
TscAI	CASTG	1 cut(s)	553
TspDTI	ATGAA	2 cut(s)	140, 195
TspGWI	ACGGA	2 cut(s)	133, 720
TspRI	CASTG	1 cut(s)	553
Vha464I	CTTAAG	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	644, 707
XapI	RAATTY	2 cut(s)	437, 569
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	3 cut(s)	245, 459, 485
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.