Rw5G032400

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004015
Physical Location & Seq
Reverse (-)
54832561 .. 54834034
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032400.1

Sequence Viewer

Length: 468 bp
ATGGTTCATTACTTAATTCTTGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTATCTCAGTGGGTTCATCTCTGGTGGAAAAGGATAAGCTAGAACTCGCTACATCACTCATTGCAAAGGCCAAGGCAAAGGGAGTGTCTCTTTTGCTATCCACTGATGTCATAATTGCAGACAATTTTGCTCCTGATGCAAACAGCAAGATTGTTCCAGCTTCAAGCATCCCTGATGGGTGGATGGGATTGGATATTGGACCACACTCTATTAAGACATTCAATGATGCACTTGATACCACTCAAACCATCATTTGGAACGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCAGTAGGAACAGAGACATGGTTGTTGTGCCTCTTATGTATGCTAGCCATTGCACGAGATGGAGCTAGTAGTGGTGTTGTCCCCACGGTTGTGTACATGGTGACATGCATATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

155

Amino Acids

16.52

Weight (kDa)

4.94

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 3 - 124 1.5e-41 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 312
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 2 cut(s) 222, 280
AleI CACNNNNGTG 1 cut(s) 440
AluBI AGCT 3 cut(s) 97, 218, 416
AluI AGCT 3 cut(s) 97, 218, 416
Alw26I GTCTC 2 cut(s) 150, 359
AoxI GGCC 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspS9I GGNCC 2 cut(s) 257, 320
AsuHPI GGTGA 1 cut(s) 463
AsuNHI GCTAGC 1 cut(s) 394
AvaII GGWCC 2 cut(s) 257, 320
BauI CACGAG 1 cut(s) 405
BccI CCATC 4 cut(s) 227, 235, 314, 404
BcoDI GTCTC 2 cut(s) 150, 359
BfaI CTAG 4 cut(s) 98, 395, 417, 466
Bme18I GGWCC 2 cut(s) 257, 320
BmgT120I GGNCC 2 cut(s) 257, 320
BmsI GCATC 3 cut(s) 184, 234, 274
BmtI GCTAGC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 129, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse3DI GCAATG 2 cut(s) 117, 399
BseDI CCNNGG 2 cut(s) 129, 435
BseGI GGATG 2 cut(s) 225, 246
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 2 cut(s) 117, 399
BseMII CTCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 128
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 2 cut(s) 150, 359
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 1 cut(s) 33
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 77
BspOI GCTAGC 1 cut(s) 398
BsrDI GCAATG 2 cut(s) 117, 399
BsrGI TGTACA 1 cut(s) 444
BssECI CCNNGG 2 cut(s) 129, 435
BssMI GATC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 439
BstAUI TGTACA 1 cut(s) 444
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 2 cut(s) 225, 246
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 2 cut(s) 150, 359
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 459
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 2 cut(s) 225, 246
BtsIMutI CAGTG 2 cut(s) 72, 159
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 257, 320
Csp6I GTAC 1 cut(s) 445
CviAII CATG 3 cut(s) 369, 448, 456
CviJI RGCY 5 cut(s) 97, 128, 218, 398, 416
CviKI_1 RGCY 5 cut(s) 97, 128, 218, 398, 416
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 1 cut(s) 64
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 257, 320
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 3 cut(s) 372, 451, 459
FaiI YATR 7 cut(s) 170, 370, 388, 392, 449, 457, 461
FaqI GGGAC 1 cut(s) 416
FatI CATG 3 cut(s) 368, 447, 455
FokI GGATG 2 cut(s) 212, 253
FspBI CTAG 4 cut(s) 98, 395, 417, 466
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 3 cut(s) 372, 451, 459
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 1 cut(s) 445
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4V TGCA 7 cut(s) 122, 176, 197, 287, 353, 404, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 64
Hsp92II CATG 3 cut(s) 372, 451, 459
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 193, 413
LpnPI CCDG 5 cut(s) 41, 65, 204, 228, 243
LweI GCATC 3 cut(s) 184, 234, 274
MaeI CTAG 4 cut(s) 98, 395, 417, 466
MaeIII GTNAC 1 cut(s) 451
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 1 cut(s) 28
MluCI AATT 3 cut(s) 15, 171, 181
MnlI CCTC 2 cut(s) 20, 392
Mph1103I ATGCAT 1 cut(s) 461
MseI TTAA 2 cut(s) 14, 270
MslI CAYNNNNRTG 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 1 cut(s) 33
NheI GCTAGC 1 cut(s) 394
NlaIII CATG 3 cut(s) 372, 451, 459
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 461
NspI RCATGY 1 cut(s) 459
OliI CACNNNNGTG 1 cut(s) 440
PflMI CCANNNNNTGG 1 cut(s) 312
PspPI GGNCC 2 cut(s) 257, 320
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 440
SaqAI TTAA 2 cut(s) 14, 270
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 2 cut(s) 257, 320
SetI ASST 3 cut(s) 99, 220, 418
SfaNI GCATC 3 cut(s) 184, 234, 274
SinI GGWCC 2 cut(s) 257, 320
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 3 cut(s) 15, 171, 181
SspMI CTAG 4 cut(s) 98, 395, 417, 466
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 439
TasI AATT 3 cut(s) 15, 171, 181
TatI WGTACW 1 cut(s) 444
Tru1I TTAA 2 cut(s) 14, 270
Tru9I TTAA 2 cut(s) 14, 270
TscAI CASTG 2 cut(s) 72, 166
TseFI GTSAC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 2 cut(s) 72, 166
Van91I CCANNNNNTGG 1 cut(s) 312
VpaK11BI GGWCC 2 cut(s) 257, 320
XceI RCATGY 1 cut(s) 459
XspI CTAG 4 cut(s) 98, 395, 417, 466
Zsp2I ATGCAT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.