Rh6DG474000

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004015
Physical Location & Seq
Reverse (-)
63999485 .. 64004777
5293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG474000.1

Sequence Viewer

Length: 429 bp
ATGATCTTCACATTTTACAAGGCACAGGGTATCTCAGTGGGTTCATCTCTGGTGGAAAAGGATAAGCTAGAACTCGCTACATCACTCATTGCAAAGGCCAAGGCAAAGGGAGTGTCTCTTTTGCTACCCACTGATGTCATAATTGCAGACAAATTTGCTCCTGATGCAAACAGCAAGATTGTTCCAGCTTCAAGCATCCCTGATGGGTGGATGGGATTGGATATTGGACTAGACTCTATTAAGACATTCAATGATGCACTTGATACCACTCAAACCATCATTTGGAACGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCAGTAGGAACAGAGACATGGTTGCTGTGCCTCTTATGTATGCTAGCCATTGCACGAGATGGAGCTAGTGGTGGTGTTGTCCGCACTGTTGTGGAATGTTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

142

Amino Acids

15.16

Weight (kDa)

4.68

Isoelectric Point (pI)

23.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 1 - 114 5.4e-38 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AciI CCGC 1 cut(s) 403
AcsI RAATTY 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 192, 250
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 3 cut(s) 67, 188, 386
AluI AGCT 3 cut(s) 67, 188, 386
Alw26I GTCTC 2 cut(s) 120, 329
AoxI GGCC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 290
AsuNHI GCTAGC 1 cut(s) 364
AvaII GGWCC 1 cut(s) 290
BauI CACGAG 1 cut(s) 375
BccI CCATC 4 cut(s) 197, 205, 284, 374
BcoDI GTCTC 2 cut(s) 120, 329
BfaI CTAG 4 cut(s) 68, 230, 365, 387
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmsI GCATC 3 cut(s) 154, 204, 244
BmtI GCTAGC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 87, 369
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 195, 216
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMI GCAATG 2 cut(s) 87, 369
BseMII CTCAG 1 cut(s) 48
BshFI GGCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 120, 329
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 403
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 47
BspOI GCTAGC 1 cut(s) 368
BsrDI GCAATG 2 cut(s) 87, 369
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 3
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 195, 216
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 120, 329
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 195, 216
BtsIMutI CAGTG 3 cut(s) 42, 129, 405
Cac8I GCNNGC 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 290
CviAII CATG 1 cut(s) 339
CviJI RGCY 5 cut(s) 67, 98, 188, 368, 386
CviKI_1 RGCY 5 cut(s) 67, 98, 188, 368, 386
DdeI CTNAG 1 cut(s) 34
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 342
FaiI YATR 5 cut(s) 140, 340, 358, 362, 427
FatI CATG 1 cut(s) 338
FokI GGATG 2 cut(s) 182, 223
FspBI CTAG 4 cut(s) 68, 230, 365, 387
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 1 cut(s) 342
HinfI GANTC 1 cut(s) 233
Hpy188III TCNNGA 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 6 cut(s) 92, 146, 167, 257, 323, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 34
Hsp92II CATG 1 cut(s) 342
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 163, 383
LpnPI CCDG 5 cut(s) 11, 35, 174, 198, 213
LweI GCATC 3 cut(s) 154, 204, 244
MaeI CTAG 4 cut(s) 68, 230, 365, 387
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 2 cut(s) 141, 152
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 1 cut(s) 3
NheI GCTAGC 1 cut(s) 364
NlaIII CATG 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 420
PflMI CCANNNNNTGG 1 cut(s) 282
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 227
SetI ASST 3 cut(s) 69, 190, 388
SfaNI GCATC 3 cut(s) 154, 204, 244
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 2 cut(s) 141, 152
SsiI CCGC 1 cut(s) 403
SspMI CTAG 4 cut(s) 68, 230, 365, 387
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 409
TasI AATT 2 cut(s) 141, 152
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 3 cut(s) 42, 136, 412
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 3 cut(s) 42, 136, 412
Van91I CCANNNNNTGG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 4 cut(s) 68, 230, 365, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.