Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009240

Physical Location & Seq

Genomic Coordinates Forward (+)

71219269 .. 71226069

Gene Structure 6801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGACTGGAATCCCCCCTACCAATGAGCCTCGCCTCCCTCTTACTTCGCAAAGAATCCCAGCATGGTATGGGTCCCAGATCACTTCCCCTCACCCTGCGATAATTGAGGAGCATCTCGCGGCCCAGCTTCAAGATATTCAAGGTCTTCTAGTTGATAACCAGAGGCTGGCTGCGACTCATGTTGCCCTTAAGCAGGAATTGGAAGCTGCCCAATTTGAGTTGCAACGCATGGCTTACCATGTTGATTCAATGCGGTCAGACAAGGATGTTCAAATGAGAGATTTGTATGACAAGTCTGTGCGTTTGGAAATGGATCTTCGTGGGGTTGAGGCTATGCGGGCTGAGCTTCTTCAGGTTCGCGCTGATATCAAGGAACTCACTGTTGCAAGGCAAGAGCTCTCTGGCCAGGCGCAAGCGATGACCCAAGATTTGGCTAGAATCAATGCTGACTTGCAACAGGCACCAATATTAAGAGCAGAAATTGAATCTATGAAACAAGAACTGCAACGTGCTAGAGCTGCCATTGAGTATGAAAAGAAAGGGTATGCAGAGAATTATGAGCATGGTCAGGTAATGGAGAAGAACTTGATCTCAATGGCTAGGGAGCTGGAGAAACTTCGTGCAGAAATAGCTAATACTGAGAAGAGGGCACGTGCTTCAGCTGCAGTTGGAAATCCCAGTGGAGGTTACAATGCAAATTATGGTAATCCTGAAGCTGGATATGCAGGAAATCCTTATCCTGCCACCTATGGCATGAATCCTGTACAGGGTGGTGCTGAAAATTTTCCTCAGTATCCTATGCCTGGTTCTTGGGGTGCATACGACATGCAACGAGCTCAGGGACACCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.63

Weight (kDa)

5.63

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14750
fragaria_vesca	FvH4_3g17610 FvH4_3g17610 FvH4_3g17610
malus_domestica	MD03G1250800.v1.1 MD11G1271000.v1.1
prunus_persica	Prupe.4G155500_v2.0.a1
pyrus_communis	pycom03g19850 pycom11g23970
rosa_chinensis	RchiOBHm_Chr5g0029311
rosa_laevigata	RLG00000033152
rosa_multiflora	Rmu_co8357187.1_g000001 Rmu_sc0004205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050700
rosa_rugosa	Rorug05G0113000 Rorug05G0113100 Rorug05G0113200
rosa_samantha	Rh5AG205300 Rh5BG203800 Rh5CG225200 Rh5DG207400
rosa_wichuraiana	Rw5G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccB7I	CCANNNNNTGG	2 cut(s)	166, 430
AccII	CGCG	2 cut(s)	119, 360
AciI	CCGC	3 cut(s)	119, 253, 337
AclWI	GGATC	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	781
AcuI	CTGAAG	3 cut(s)	335, 642, 732
AcvI	CACGTG	1 cut(s)	653
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	7 cut(s)	166, 193, 430, 683, 716, 767, 803
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	5 cut(s)	131, 140, 249, 272, 485
AjnI	CCWGG	2 cut(s)	405, 802
Alw21I	GWGCWC	2 cut(s)	399, 838
AlwI	GGATC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	120, 403
ApeKI	GCWGC	4 cut(s)	170, 206, 518, 662
ApoI	RAATTY	1 cut(s)	781
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	2 cut(s)	362, 412
AspS9I	GGNCC	2 cut(s)	72, 121
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	652
BalI	TGGCCA	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	2 cut(s)	399, 838
BbrPI	CACGTG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	399, 838
BbvI	GCAGC	4 cut(s)	157, 193, 505, 649
BciT130I	CCWGG	2 cut(s)	407, 804
BciVI	GTATCC	1 cut(s)	804
BfaI	CTAG	4 cut(s)	149, 435, 513, 600
BfmI	CTRYAG	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	804
BisI	GCNGC	5 cut(s)	120, 171, 207, 519, 663
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	5 cut(s)	121, 172, 208, 520, 664
Bme1390I	CCNGG	2 cut(s)	407, 804
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	72, 121
BmiI	GGNNCC	3 cut(s)	73, 74, 462
BmrFI	CCNGG	2 cut(s)	407, 804
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	837
Bpu1102I	GCTNAGC	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	7 cut(s)	166, 193, 430, 683, 716, 767, 803
Bse1I	ACTGG	2 cut(s)	10, 678
BseBI	CCWGG	2 cut(s)	407, 804
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	7 cut(s)	166, 193, 430, 683, 716, 767, 803
BseMII	CTCAG	4 cut(s)	333, 630, 803, 851
BseNI	ACTGG	2 cut(s)	10, 678
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	4 cut(s)	157, 193, 505, 649
BseYI	CCCAGC	2 cut(s)	58, 123
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	2 cut(s)	119, 360
BshFI	GGCC	2 cut(s)	122, 405
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	399, 838
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	7 cut(s)	166, 193, 430, 683, 716, 767, 803
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	122, 405
Bsp1286I	GDGCHC	3 cut(s)	399, 652, 838
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	3 cut(s)	78, 313, 588
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	3 cut(s)	119, 253, 337
BspANI	GGCC	2 cut(s)	122, 405
BspCNI	CTCAG	4 cut(s)	334, 631, 802, 850
BspFNI	CGCG	2 cut(s)	119, 360
BspLI	GGNNCC	3 cut(s)	73, 74, 462
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	460
BspTI	CTTAAG	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	2 cut(s)	10, 678
BssMI	GATC	3 cut(s)	78, 313, 588
Bst2UI	CCWGG	2 cut(s)	407, 804
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	638
BstAFI	CTTAAG	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	763
BstBAI	YACGTR	1 cut(s)	653
BstC8I	GCNNGC	3 cut(s)	168, 339, 414
BstDEI	CTNAG	4 cut(s)	342, 639, 789, 837
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	2 cut(s)	119, 360
BstHHI	GCGC	2 cut(s)	362, 412
BstKTI	GATC	3 cut(s)	81, 316, 591
BstMBI	GATC	3 cut(s)	78, 313, 588
BstMWI	GCNNNNNNNGC	6 cut(s)	338, 343, 518, 629, 662, 722
BstNI	CCWGG	2 cut(s)	407, 804
BstNSI	RCATGY	1 cut(s)	829
BstSCI	CCNGG	2 cut(s)	405, 802
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	2 cut(s)	119, 360
BstV1I	GCAGC	4 cut(s)	157, 193, 505, 649
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	122, 405
BtgZI	GCGATG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	378, 685
Cac8I	GCNNGC	3 cut(s)	168, 339, 414
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	2 cut(s)	362, 412
Cfr13I	GGNCC	2 cut(s)	72, 121
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	7 cut(s)	63, 179, 229, 239, 563, 754, 826
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	4 cut(s)	342, 639, 789, 837
DpnI	GATC	3 cut(s)	80, 315, 590
DpnII	GATC	3 cut(s)	78, 313, 588
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Ecl136II	GAGCTC	2 cut(s)	397, 836
Eco24I	GRGCYC	2 cut(s)	399, 838
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	2 cut(s)	397, 836
Eco57I	CTGAAG	3 cut(s)	335, 642, 732
Eco72I	CACGTG	1 cut(s)	653
EcoICRI	GAGCTC	2 cut(s)	397, 836
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	405, 802
EcoRV	GATATC	1 cut(s)	367
EcoT38I	GRGCYC	2 cut(s)	399, 838
FaeI	CATG	7 cut(s)	66, 182, 232, 242, 566, 757, 829
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	7 cut(s)	62, 178, 228, 238, 562, 753, 825
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	5 cut(s)	120, 171, 207, 519, 663
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	2 cut(s)	399, 838
Fsp4HI	GCNGC	5 cut(s)	120, 171, 207, 519, 663
FspBI	CTAG	4 cut(s)	149, 435, 513, 600
GlaI	GCGC	2 cut(s)	361, 411
GluI	GCNGC	5 cut(s)	120, 171, 207, 519, 663
GsaI	CCCAGC	2 cut(s)	62, 127
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	2 cut(s)	122, 405
HhaI	GCGC	2 cut(s)	362, 412
Hin1II	CATG	7 cut(s)	66, 182, 232, 242, 566, 757, 829
Hin6I	GCGC	2 cut(s)	360, 410
HinP1I	GCGC	2 cut(s)	360, 410
HinfI	GANTC	7 cut(s)	9, 54, 175, 245, 438, 485, 757
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	2 cut(s)	131, 710
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	508, 652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	338, 343, 518, 629, 662, 722
HpyF3I	CTNAG	4 cut(s)	342, 639, 789, 837
HpySE526I	ACGT	2 cut(s)	508, 652
Hsp92II	CATG	7 cut(s)	66, 182, 232, 242, 566, 757, 829
HspAI	GCGC	2 cut(s)	360, 410
KflI	GGGWCCC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	78, 313, 588
LmnI	GCTCC	2 cut(s)	109, 604
Lsp1109I	GCAGC	4 cut(s)	157, 193, 505, 649
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	4 cut(s)	149, 435, 513, 600
MaeII	ACGT	2 cut(s)	508, 652
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	3 cut(s)	80, 315, 590
MboI	GATC	3 cut(s)	78, 313, 588
MboII	GAAGA	5 cut(s)	137, 308, 341, 592, 655
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	3 cut(s)	399, 652, 838
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	7 cut(s)	102, 197, 212, 480, 553, 697, 781
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	649
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	783
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	2 cut(s)	189, 470
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	662
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	407, 804
MvaI	CCWGG	2 cut(s)	407, 804
MvnI	CGCG	2 cut(s)	119, 360
MwoI	GCNNNNNNNGC	6 cut(s)	338, 343, 518, 629, 662, 722
NdeII	GATC	3 cut(s)	78, 313, 588
NlaIII	CATG	7 cut(s)	66, 182, 232, 242, 566, 757, 829
NlaIV	GGNNCC	3 cut(s)	73, 74, 462
NspI	RCATGY	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	6 cut(s)	9, 54, 245, 438, 485, 757
PflMI	CCANNNNNTGG	2 cut(s)	166, 430
PkrI	GCNGC	5 cut(s)	121, 172, 208, 520, 664
PleI	GAGTC	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	72
Psp124BI	GAGCTC	2 cut(s)	399, 838
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	405, 802
PspCI	CACGTG	1 cut(s)	653
PspFI	CCCAGC	2 cut(s)	58, 123
PspGI	CCWGG	2 cut(s)	405, 802
PspN4I	GGNNCC	3 cut(s)	73, 74, 462
PspPI	GGNCC	2 cut(s)	72, 121
PspPPI	RGGWCCY	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
SacI	GAGCTC	2 cut(s)	399, 838
SaqAI	TTAA	2 cut(s)	189, 470
SatI	GCNGC	5 cut(s)	120, 171, 207, 519, 663
Sau3AI	GATC	3 cut(s)	78, 313, 588
Sau96I	GGNCC	2 cut(s)	72, 121
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	407, 804
SduI	GDGCHC	3 cut(s)	399, 652, 838
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	7 cut(s)	102, 197, 212, 480, 553, 697, 781
SsiI	CCGC	3 cut(s)	119, 253, 337
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	4 cut(s)	149, 435, 513, 600
SstI	GAGCTC	2 cut(s)	399, 838
StyD4I	CCNGG	2 cut(s)	405, 802
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	2 cut(s)	511, 655
TasI	AATT	7 cut(s)	102, 197, 212, 480, 553, 697, 781
TatI	WGTACW	1 cut(s)	763
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	6 cut(s)	9, 54, 245, 438, 485, 757
Tru1I	TTAA	2 cut(s)	189, 470
Tru9I	TTAA	2 cut(s)	189, 470
TscAI	CASTG	2 cut(s)	385, 685
TseI	GCWGC	4 cut(s)	170, 206, 518, 662
TspDTI	ATGAA	3 cut(s)	506, 546, 770
TspRI	CASTG	2 cut(s)	385, 685
Van91I	CCANNNNNTGG	2 cut(s)	166, 430
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	781
XceI	RCATGY	1 cut(s)	829
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	4 cut(s)	149, 435, 513, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.