Rmu_co8357187.1_g000001

Protein FLX-like 1 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8357187.1
OG0009240
Physical Location & Seq
Reverse (-)
515 .. 982
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8357187.1_g000001.1.cds

Sequence Viewer

Length: 279 bp
atggagaagaacttgatctcaatggctagggagctggagaaacttcgtgcagaaatcgctaatactgagaagagggcacgtgcttcagctgcagttggaaatcccagtggaggttacaatgcaaattatggtaatcctgaagctggatatgcaggaaatccttatcctgccacctatggcatgaatcctgtacagggtggtgctgaaaattttcctcagtatcctatgcctggttcttggggtgcatacgacatgcaacgagctcagggacaccgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.94

Weight (kDa)

8.01

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 2 cut(s) 69, 159
AcvI CACGTG 1 cut(s) 80
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 4 cut(s) 110, 143, 194, 230
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 4 cut(s) 34, 89, 143, 263
AluI AGCT 4 cut(s) 34, 89, 143, 263
Alw21I GWGCWC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 265
BbrPI CACGTG 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 231
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 80
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 143, 194, 230
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 231
BseLI CCNNNNNNNGG 4 cut(s) 110, 143, 194, 230
BseMII CTCAG 3 cut(s) 57, 230, 278
BseNI ACTGG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 265
BslI CCNNNNNNNGG 4 cut(s) 110, 143, 194, 230
Bsp1286I GDGCHC 2 cut(s) 79, 265
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 1 cut(s) 15
BspCNI CTCAG 3 cut(s) 58, 229, 277
BspMAI CTGCAG 1 cut(s) 94
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 1 cut(s) 105
BssMI GATC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 190
BstBAI YACGTR 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 66, 216, 264
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 56, 89, 149
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 76
BsuI GTATCC 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 112
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 181, 253
CviJI RGCY 5 cut(s) 26, 34, 89, 143, 263
CviKI_1 RGCY 5 cut(s) 26, 34, 89, 143, 263
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 3 cut(s) 66, 216, 264
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 69, 159
Eco72I CACGTG 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 265
FaeI CATG 2 cut(s) 184, 256
FaiI YATR 7 cut(s) 129, 150, 177, 182, 227, 247, 254
FatI CATG 2 cut(s) 180, 252
Fnu4HI GCNGC 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 56
Hin1II CATG 2 cut(s) 184, 256
HinfI GANTC 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 6 cut(s) 50, 92, 122, 152, 245, 256
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 89, 149
HpyF3I CTNAG 3 cut(s) 66, 216, 264
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 184, 256
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 76
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 19, 82
MhlI GDGCHC 2 cut(s) 79, 265
MluCI AATT 2 cut(s) 124, 208
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 3 cut(s) 66, 104, 225
MroXI GAANNNNTTC 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 56, 89, 149
NdeII GATC 1 cut(s) 15
NlaIII CATG 2 cut(s) 184, 256
NspI RCATGY 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 91
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 229
PspCI CACGTG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 229
PstI CTGCAG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SacI GAGCTC 1 cut(s) 265
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 2 cut(s) 79, 265
SetI ASST 7 cut(s) 36, 82, 91, 115, 145, 176, 265
SfcI CTRYAG 1 cut(s) 90
Sse9I AATT 2 cut(s) 124, 208
SspMI CTAG 1 cut(s) 27
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 229
TaiI ACGT 1 cut(s) 82
TasI AATT 2 cut(s) 124, 208
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 1 cut(s) 184
TscAI CASTG 1 cut(s) 112
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 112
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.