Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009240

Physical Location & Seq

Genomic Coordinates Reverse (-)

8907169 .. 8909523

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G155500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCTGGAAGAAATCGTGGACCGCCTCATGCTGGACTTCCCCCCCAGGTCCATGAACCATTTGGAAGAGGACTTGGGCCGATGCCCCATCCAGCATTACTCGAGGAAATGAGAGAATCCCAACTTGGAATGGGTCCCAGACCACTTCCCCCTCACCCTGCGATAATTGAGGAGCATCTTGCGGCTCAACATCAAGATATCCAAGGTCTTCTAGTTGGTAACCAAAGGCTGGCTGCAACCCATGTTGCACTAAAGCAGGAATTGGAAGCTGCCCAATATGAGTTGCAGCGGATGGCTTACCATGTTGATTCACTGCGGGCAGACAAGGATGTTCAAATGAGAGATTTGTATGAGAAGTCTGTTCGTTTGGAAGTGGATCTTCGCGGAGTGGAGGCTATGCGAGCTGAGCTTCTTCAGGTTCGTGCTGATATCAAGGAGCTCACTGCAGCGAGGCAGGAGCTCTCGGGCCAGGCACAAGCAATGACACAAGATTTGGCTAGAATCACTGCTGATTTGCAACAGGCACCAGCTTTGAGAGCAGAAATTGAAGCTATGAAACAGGAATTGCAACGTGCTAGAGCTGCCATTGAGTATGAAAAGAAAGGATATGCAGAGAATTATGAGCATGGCCAGGTGATGGAAAAGAATTTGATATCGATGGCTAGGGAGCTAGAGAAACTTCGTGCAGAAATTGCGAATACTGAGAAAAGAGCGCGAGCTGCAGCTGCTGTTGGAAATCCAGGTGTAGGTTATAATTCAAATTATGGAAACCCTGAAGCAGGATATGCAGGAAATCCCTATCCTGCCAGCTATGGCATGAATCCCGTACAAGGTGGTGCTGAAAGTTTTCCTCAATATACACCTATGCCTGGTTCATGGGGTGCATATGACATGCAGCGAGCTCAGGGACATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

33.71

Weight (kDa)

6.09

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14750
fragaria_vesca	FvH4_3g17610 FvH4_3g17610 FvH4_3g17610
malus_domestica	MD03G1250800.v1.1 MD11G1271000.v1.1
prunus_persica	Prupe.4G155500_v2.0.a1
pyrus_communis	pycom03g19850 pycom11g23970
rosa_chinensis	RchiOBHm_Chr5g0029311
rosa_laevigata	RLG00000033152
rosa_multiflora	Rmu_co8357187.1_g000001 Rmu_sc0004205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050700
rosa_rugosa	Rorug05G0113000 Rorug05G0113100 Rorug05G0113200
rosa_samantha	Rh5AG205300 Rh5BG203800 Rh5CG225200 Rh5DG207400
rosa_wichuraiana	Rw5G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AccB1I	GGYRCC	1 cut(s)	523
AccB7I	CCANNNNNTGG	2 cut(s)	229, 637
AccII	CGCG	2 cut(s)	384, 715
AciI	CCGC	5 cut(s)	23, 182, 289, 316, 384
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	2 cut(s)	398, 795
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	7 cut(s)	32, 229, 637, 746, 779, 830, 869
AgsI	TTSAA	3 cut(s)	335, 548, 759
AjnI	CCWGG	5 cut(s)	45, 468, 630, 739, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
Alw21I	GWGCWC	3 cut(s)	441, 462, 904
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	728
Ama87I	CYCGRG	2 cut(s)	101, 463
AoxI	GGCC	3 cut(s)	77, 466, 628
ApeKI	GCWGC	9 cut(s)	233, 269, 286, 446, 581, 719, 722, 725, 895
ApoI	RAATTY	1 cut(s)	646
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
Asp700I	GAANNNNTTC	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	5 cut(s)	20, 49, 77, 134, 466
AsuHPI	GGTGA	2 cut(s)	146, 646
AvaI	CYCGRG	2 cut(s)	101, 463
AvaII	GGWCC	3 cut(s)	20, 49, 134
BalI	TGGCCA	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	3 cut(s)	441, 462, 904
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	3 cut(s)	441, 462, 904
BbvI	GCAGC	9 cut(s)	220, 256, 298, 458, 568, 706, 712, 734, 907
BccI	CCATC	4 cut(s)	96, 286, 631, 652
BciT130I	CCWGG	5 cut(s)	47, 470, 632, 741, 870
BfaI	CTAG	5 cut(s)	212, 498, 576, 663, 671
BfmI	CTRYAG	2 cut(s)	444, 720
BlpI	GCTNAGC	1 cut(s)	405
Bme1390I	CCNGG	5 cut(s)	47, 470, 632, 741, 870
Bme18I	GGWCC	3 cut(s)	20, 49, 134
BmeT110I	CYCGRG	2 cut(s)	101, 463
BmgT120I	GGNCC	5 cut(s)	20, 49, 77, 134, 466
BmiI	GGNNCC	3 cut(s)	135, 136, 525
BmrFI	CCNGG	5 cut(s)	47, 470, 632, 741, 870
BmsI	GCATC	2 cut(s)	72, 184
BpiI	GAAGAC	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	903
Bpu1102I	GCTNAGC	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	45, 202
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 229, 637, 746, 779, 830, 869
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	5 cut(s)	47, 470, 632, 741, 870
BseCI	ATCGAT	1 cut(s)	656
BseDI	CCNNGG	2 cut(s)	45, 202
BseGI	GGATG	3 cut(s)	88, 297, 334
BseLI	CCNNNNNNNGG	7 cut(s)	32, 229, 637, 746, 779, 830, 869
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	396, 693, 917
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	9 cut(s)	220, 256, 298, 458, 568, 706, 712, 734, 907
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	2 cut(s)	384, 715
BshFI	GGCC	3 cut(s)	79, 468, 630
BshNI	GGYRCC	1 cut(s)	523
BshVI	ATCGAT	1 cut(s)	656
BsiHKAI	GWGCWC	3 cut(s)	441, 462, 904
BsiHKCI	CYCGRG	2 cut(s)	101, 463
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	7 cut(s)	32, 229, 637, 746, 779, 830, 869
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	79, 468, 630
BsoBI	CYCGRG	2 cut(s)	101, 463
Bsp1286I	GDGCHC	3 cut(s)	441, 462, 904
Bsp143I	GATC	1 cut(s)	376
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	5 cut(s)	23, 182, 289, 316, 384
BspANI	GGCC	3 cut(s)	79, 468, 630
BspCNI	CTCAG	3 cut(s)	397, 694, 916
BspDI	ATCGAT	1 cut(s)	656
BspFNI	CGCG	2 cut(s)	384, 715
BspLI	GGNNCC	3 cut(s)	135, 136, 525
BspMAI	CTGCAG	2 cut(s)	448, 724
BspPI	GGATC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	45, 202
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	5 cut(s)	47, 470, 632, 741, 870
Bst6I	CTCTTC	1 cut(s)	61
BstAPI	GCANNNNNTGC	2 cut(s)	692, 785
BstC8I	GCNNGC	6 cut(s)	231, 318, 402, 717, 808, 900
BstDEI	CTNAG	3 cut(s)	405, 702, 903
BstEII	GGTNACC	1 cut(s)	218
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	3 cut(s)	88, 297, 334
BstFNI	CGCG	2 cut(s)	384, 715
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	8 cut(s)	401, 406, 536, 581, 692, 719, 725, 785
BstNI	CCWGG	5 cut(s)	47, 470, 632, 741, 870
BstNSI	RCATGY	1 cut(s)	895
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	5 cut(s)	45, 468, 630, 739, 868
BstSFI	CTRYAG	2 cut(s)	444, 720
BstUI	CGCG	2 cut(s)	384, 715
BstV1I	GCAGC	9 cut(s)	220, 256, 298, 458, 568, 706, 712, 734, 907
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	79, 468, 630
BsuTUI	ATCGAT	1 cut(s)	656
BtsCI	GGATG	3 cut(s)	88, 297, 334
BtsI	GCAGTG	3 cut(s)	311, 441, 504
BtsIMutI	CAGTG	3 cut(s)	311, 441, 504
Cac8I	GCNNGC	6 cut(s)	231, 318, 402, 717, 808, 900
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	5 cut(s)	20, 49, 77, 134, 466
ClaI	ATCGAT	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	827
CviAII	CATG	8 cut(s)	29, 53, 242, 302, 626, 817, 876, 892
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	3 cut(s)	405, 702, 903
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Ecl136II	GAGCTC	3 cut(s)	439, 460, 902
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	3 cut(s)	441, 462, 904
Eco32I	GATATC	3 cut(s)	199, 430, 654
Eco47I	GGWCC	3 cut(s)	20, 49, 134
Eco53kI	GAGCTC	3 cut(s)	439, 460, 902
Eco57I	CTGAAG	2 cut(s)	398, 795
Eco88I	CYCGRG	2 cut(s)	101, 463
Eco91I	GGTNACC	1 cut(s)	218
EcoICRI	GAGCTC	3 cut(s)	439, 460, 902
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoO109I	RGGNCCY	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	218
EcoRII	CCWGG	5 cut(s)	45, 468, 630, 739, 868
EcoRV	GATATC	3 cut(s)	199, 430, 654
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	3 cut(s)	441, 462, 904
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	8 cut(s)	32, 56, 245, 305, 629, 820, 879, 895
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	8 cut(s)	28, 52, 241, 301, 625, 816, 875, 891
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	886
FokI	GGATG	3 cut(s)	75, 304, 341
FriOI	GRGCYC	3 cut(s)	441, 462, 904
FspBI	CTAG	5 cut(s)	212, 498, 576, 663, 671
GlaI	GCGC	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	79, 468, 630
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	8 cut(s)	32, 56, 245, 305, 629, 820, 879, 895
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HinfI	GANTC	4 cut(s)	116, 308, 501, 820
HphI	GGTGA	2 cut(s)	146, 646
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188III	TCNNGA	2 cut(s)	6, 194
Hpy8I	GTNNAC	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	571
HpyF10VI	GCNNNNNNNGC	8 cut(s)	401, 406, 536, 581, 692, 719, 725, 785
HpyF3I	CTNAG	3 cut(s)	405, 702, 903
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	8 cut(s)	32, 56, 245, 305, 629, 820, 879, 895
HspAI	GCGC	1 cut(s)	713
KflI	GGGWCCC	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	4 cut(s)	172, 436, 457, 667
Lsp1109I	GCAGC	9 cut(s)	220, 256, 298, 458, 568, 706, 712, 734, 907
LweI	GCATC	2 cut(s)	72, 184
MaeI	CTAG	5 cut(s)	212, 498, 576, 663, 671
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	5 cut(s)	21, 78, 200, 371, 404
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	3 cut(s)	441, 462, 904
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	9 cut(s)	165, 260, 543, 563, 616, 646, 690, 754, 760
MluNI	TGGCCA	1 cut(s)	630
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	8 cut(s)	36, 62, 97, 162, 163, 385, 444, 861
Mox20I	TGGCCA	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	846
MscI	TGGCCA	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	289, 725
MspR9I	CCNGG	5 cut(s)	47, 470, 632, 741, 870
MvaI	CCWGG	5 cut(s)	47, 470, 632, 741, 870
MvnI	CGCG	2 cut(s)	384, 715
MwoI	GCNNNNNNNGC	8 cut(s)	401, 406, 536, 581, 692, 719, 725, 785
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	8 cut(s)	32, 56, 245, 305, 629, 820, 879, 895
NlaIV	GGNNCC	3 cut(s)	135, 136, 525
NspI	RCATGY	1 cut(s)	895
PaeR7I	CTCGAG	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	4 cut(s)	116, 308, 501, 820
PflMI	CCANNNNNTGG	2 cut(s)	229, 637
PpuMI	RGGWCCY	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	753
Psp124BI	GAGCTC	3 cut(s)	441, 462, 904
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	5 cut(s)	45, 468, 630, 739, 868
PspEI	GGTNACC	1 cut(s)	218
PspGI	CCWGG	5 cut(s)	45, 468, 630, 739, 868
PspN4I	GGNNCC	3 cut(s)	135, 136, 525
PspPI	GGNCC	5 cut(s)	20, 49, 77, 134, 466
PspPPI	RGGWCCY	1 cut(s)	134
PspXI	VCTCGAGB	1 cut(s)	101
PstI	CTGCAG	2 cut(s)	448, 724
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
SacI	GAGCTC	3 cut(s)	441, 462, 904
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	5 cut(s)	20, 49, 77, 134, 466
ScrFI	CCNGG	5 cut(s)	47, 470, 632, 741, 870
SduI	GDGCHC	3 cut(s)	441, 462, 904
SfaNI	GCATC	2 cut(s)	72, 184
SfcI	CTRYAG	2 cut(s)	444, 720
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	3 cut(s)	20, 49, 134
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	9 cut(s)	165, 260, 543, 563, 616, 646, 690, 754, 760
SsiI	CCGC	5 cut(s)	23, 182, 289, 316, 384
SspMI	CTAG	5 cut(s)	212, 498, 576, 663, 671
SstI	GAGCTC	3 cut(s)	441, 462, 904
StyD4I	CCNGG	5 cut(s)	45, 468, 630, 739, 868
StyI	CCWWGG	1 cut(s)	202
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	2 cut(s)	102, 656
TasI	AATT	9 cut(s)	165, 260, 543, 563, 616, 646, 690, 754, 760
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	4 cut(s)	116, 308, 501, 820
TscAI	CASTG	3 cut(s)	318, 448, 511
TseI	GCWGC	9 cut(s)	233, 269, 286, 446, 581, 719, 722, 725, 895
TspDTI	ATGAA	5 cut(s)	69, 569, 609, 833, 864
TspRI	CASTG	3 cut(s)	318, 448, 511
Van91I	CCANNNNNTGG	2 cut(s)	229, 637
VpaK11BI	GGWCC	3 cut(s)	20, 49, 134
XagI	CCTNNNNNAGG	1 cut(s)	777
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	5 cut(s)	212, 498, 576, 663, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.