Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005586

Physical Location & Seq

Genomic Coordinates Reverse (-)

12480702 .. 12494293

Gene Structure 13592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19340.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGAATGGAACCCATGTGAACCATCAAGGAGGAGGAGGAGGAGGGCTAGTGGACACGACCGCTACAACAATCACCATTAAAGGCATTCTGAGCTTGCTGTTGCAAAATGTTGATGAAGATGAGAGCAAGAAGAGGCTGATTTCATTGGGTATGGGAGACCCAACTGCTTTTTCTTGCTTCCACACAACCCATGTTGCTCAAGAAGCTGTTGTTGATGCTATCCAATCTGACAAGTTCAATGGCTATGCTCCCACTGTGGGTCTTCCTCAAACCAGAAGAGCAATTGCTGAATATTTGTCCAGGGATCTTCCATACAATCTAACATCGGATGATGTTTTCATCACATCGGGTTGCACACAAGCAATTGATGTCTCATTGGCAATGCTTGCTCGCCCGGGTGCAAATATCTTGCTTCCAAGACCAGGCTTCCCTATTTATGAACTTTGTTCTGCATTTAGAAATCTTGAGGTTCGGCATTTTGATCTCTTGCAAGATTGTGGCTGGGAGGTTGATCTCGATGCTGTTGAAGCTCTTGCCGATCAGAACACAGTTGCAATGGTAATTATAAACCCCGGAAATCCTTGTGGGAATGTGTACAGTTACCAACATTTGGAGATGATTGCTGAAACTGCAAAGAAACTCAGAATTCTTGTAATTGCTGATGAAGTTTATGGACACCTTGCTTTTGGGGATAAACCGTTTGTGCCTATGGGAGTGTTTGGATCAACTGTTCCTGTTCTTACTCTTGGCTCTCTATCAAAGAGATGGATAGTACCCGGATGGCGGCTTGGTTGGTTTGTGACAACTGATCCCTGTGGCATGTTTAGAAAGCCTAAGATTGTTGAGCGCATCAAGAAATATTTTGATATTTTGGGTGGTCCTGCAACCTTCATTCAGGCTGCAGTTCCGAGCATCCTTCAGAAAACTGAAGAGGCCTTCTTCAAGAAAACTATCTATTTACTGAAGCAGTCATCAGATATTTGTTCTGATAGGATAAATGACATCCCTTGTATTATTTGTCCAAGCAAAGCAGAGGGATCTATGGCTGTAATGGCGAAACTAGACATTTCACTACTGGAAGATATTAGTGACGACATTGATTTTTGTTTCAAGCTGGCCAAAGAGGAATCTGTTATCTTTCTTCCAGGAACAGCAGTAGGGCTGAAAAACTGGATACGAATTACATTTGCTGCTGATCCACCTTCTCTTGAAGAAGCTTTTAGAAGGACAAAATCTTTCTATCAAAGGCATGCCAGAAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006766 GO:0006775 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009110 GO:0009987 GO:0010189 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019439 GO:0019752 GO:0042360 GO:0042362 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

423

Amino Acids

46.47

Weight (kDa)

5.69

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	47 - 408	1e-53	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53970
fragaria_vesca	FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340
malus_domestica	MD03G1234800.v1.1 MD11G1255300.v1.1
prunus_persica	Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1
pyrus_communis	pycom11g22570
rosa_chinensis	RchiOBHm_Chr5g0032401
rosa_laevigata	RLG00000033395
rosa_multiflora	Rmu_sc0022287.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048030
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5AG225000 Rh5BG226100 Rh5CG251500 Rh5DG230700
rosa_wichuraiana	Rw5G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AccB7I	CCANNNNNTGG	1 cut(s)	613
AciI	CCGC	2 cut(s)	63, 787
AclWI	GGATC	5 cut(s)	315, 733, 806, 1048, 1193
AcoI	YGGCCR	1 cut(s)	1119
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	3 cut(s)	905, 951, 986
AfaI	GTAC	2 cut(s)	599, 777
AfiI	CCNNNNNNNGG	4 cut(s)	260, 425, 613, 786
AgsI	TTSAA	5 cut(s)	241, 530, 946, 1114, 1214
AjnI	CCWGG	3 cut(s)	302, 424, 1147
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	5 cut(s)	96, 209, 533, 1117, 1220
AluI	AGCT	5 cut(s)	96, 209, 533, 1117, 1220
Alw26I	GTCTC	2 cut(s)	153, 379
AlwI	GGATC	5 cut(s)	315, 733, 806, 1048, 1193
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	2 cut(s)	936, 1119
ApeKI	GCWGC	2 cut(s)	902, 1193
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	1 cut(s)	881
AsuC2I	CCSGG	4 cut(s)	398, 399, 576, 780
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	881
BalI	TGGCCA	1 cut(s)	1121
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	889, 1180
BccI	CCATC	3 cut(s)	33, 762, 777
BciT130I	CCWGG	3 cut(s)	304, 426, 1149
BciVI	GTATCC	1 cut(s)	1170
BcnI	CCSGG	4 cut(s)	398, 399, 576, 780
BcoDI	GTCTC	2 cut(s)	153, 379
BfaI	CTAG	2 cut(s)	50, 1064
BfmI	CTRYAG	1 cut(s)	903
BfuI	GTATCC	1 cut(s)	1170
BisI	GCNGC	3 cut(s)	788, 903, 1194
BlsI	GCNGC	3 cut(s)	789, 904, 1195
Bme1390I	CCNGG	7 cut(s)	304, 398, 399, 426, 576, 780, 1149
Bme18I	GGWCC	1 cut(s)	881
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	881
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	7 cut(s)	304, 398, 399, 426, 576, 780, 1149
BmsI	GCATC	4 cut(s)	208, 511, 861, 924
BpiI	GAAGAC	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	186, 488
BpuMI	CCSGG	4 cut(s)	398, 399, 576, 780
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	303, 397, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 425, 613, 786
Bse1I	ACTGG	2 cut(s)	1083, 1178
Bse3DI	GCAATG	2 cut(s)	390, 564
BseBI	CCWGG	3 cut(s)	304, 426, 1149
BseDI	CCNNGG	3 cut(s)	303, 397, 574
BseGI	GGATG	4 cut(s)	337, 788, 915, 1005
BseLI	CCNNNNNNNGG	4 cut(s)	260, 425, 613, 786
BseMI	GCAATG	2 cut(s)	390, 564
BseMII	CTCAG	2 cut(s)	83, 658
BseNI	ACTGG	2 cut(s)	1083, 1178
BseRI	GAGGAG	4 cut(s)	48, 51, 54, 57
BseXI	GCAGC	2 cut(s)	889, 1180
BseYI	CCCAGC	1 cut(s)	504
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	938, 1121
BsiEI	CGRYCG	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	3 cut(s)	398, 576, 780
BslI	CCNNNNNNNGG	4 cut(s)	260, 425, 613, 786
BsmAI	GTCTC	2 cut(s)	153, 379
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	938, 1121
Bso31I	GGTCTC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	397
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	8 cut(s)	307, 484, 514, 541, 725, 811, 1040, 1198
BspACI	CCGC	2 cut(s)	63, 787
BspANI	GGCC	2 cut(s)	938, 1121
BspCNI	CTCAG	2 cut(s)	84, 657
BspLI	GGNNCC	1 cut(s)	13
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	5 cut(s)	315, 733, 806, 1048, 1193
BspQI	GCTCTTC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	153
BsrDI	GCAATG	2 cut(s)	390, 564
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	2 cut(s)	1083, 1178
BssECI	CCNNGG	3 cut(s)	303, 397, 574
BssMI	GATC	8 cut(s)	307, 484, 514, 541, 725, 811, 1040, 1198
Bst2UI	CCWGG	3 cut(s)	304, 426, 1149
Bst4CI	ACNGT	5 cut(s)	259, 553, 602, 702, 733
Bst6I	CTCTTC	3 cut(s)	128, 274, 927
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	597
BstC8I	GCNNGC	5 cut(s)	98, 390, 394, 1119, 1254
BstDEI	CTNAG	3 cut(s)	92, 644, 837
BstF5I	GGATG	4 cut(s)	337, 788, 915, 1005
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	8 cut(s)	310, 487, 517, 544, 728, 814, 1043, 1201
BstMAI	GTCTC	2 cut(s)	153, 379
BstMBI	GATC	8 cut(s)	307, 484, 514, 541, 725, 811, 1040, 1198
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 206, 389, 530, 632, 1055
BstNI	CCWGG	3 cut(s)	304, 426, 1149
BstNSI	RCATGY	2 cut(s)	826, 1256
BstSCI	CCNGG	7 cut(s)	302, 396, 397, 424, 574, 778, 1147
BstSFI	CTRYAG	1 cut(s)	903
BstV1I	GCAGC	2 cut(s)	889, 1180
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	307, 1040
BstYI	RGATCY	2 cut(s)	307, 1040
BsuI	GTATCC	1 cut(s)	1170
BsuRI	GGCC	2 cut(s)	938, 1121
BtsCI	GGATG	4 cut(s)	337, 788, 915, 1005
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	98, 390, 394, 1119, 1254
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	1 cut(s)	881
Cfr9I	CCCGGG	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	598, 776
CviAII	CATG	4 cut(s)	17, 194, 823, 1253
CviQI	GTAC	2 cut(s)	598, 776
DdeI	CTNAG	3 cut(s)	92, 644, 837
DpnI	GATC	8 cut(s)	309, 486, 516, 543, 727, 813, 1042, 1200
DpnII	GATC	8 cut(s)	307, 484, 514, 541, 725, 811, 1040, 1198
EaeI	YGGCCR	1 cut(s)	1119
Eam1104I	CTCTTC	3 cut(s)	128, 274, 927
EarI	CTCTTC	3 cut(s)	128, 274, 927
Eco147I	AGGCCT	1 cut(s)	938
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	881
Eco57I	CTGAAG	3 cut(s)	905, 951, 986
Eco88I	CYCGRG	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	648
EcoRII	CCWGG	3 cut(s)	302, 424, 1147
FaeI	CATG	4 cut(s)	20, 197, 826, 1256
FatI	CATG	4 cut(s)	16, 193, 822, 1252
Fnu4HI	GCNGC	3 cut(s)	788, 903, 1194
FokI	GGATG	4 cut(s)	344, 795, 902, 992
Fsp4HI	GCNGC	3 cut(s)	788, 903, 1194
FspBI	CTAG	2 cut(s)	50, 1064
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	3 cut(s)	788, 903, 1194
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	938, 1121
HapII	CCGG	3 cut(s)	398, 576, 780
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	4 cut(s)	20, 197, 826, 1256
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	1218
HinfI	GANTC	1 cut(s)	1130
HpaII	CCGG	3 cut(s)	398, 576, 780
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	22, 55, 598
Hpy188I	TCNGA	9 cut(s)	93, 232, 331, 546, 647, 912, 924, 979, 991
Hpy188III	TCNNGA	6 cut(s)	203, 467, 518, 856, 946, 1211
Hpy8I	GTNNAC	3 cut(s)	22, 55, 598
HpyAV	CCTTC	5 cut(s)	901, 929, 949, 1215, 1221
HpyCH4III	ACNGT	5 cut(s)	259, 553, 602, 702, 733
HpyCH4V	TGCA	9 cut(s)	106, 357, 404, 455, 493, 557, 635, 887, 905
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 206, 389, 530, 632, 1055
HpyF3I	CTNAG	3 cut(s)	92, 644, 837
Hsp92II	CATG	4 cut(s)	20, 197, 826, 1256
HspAI	GCGC	1 cut(s)	850
Kzo9I	GATC	8 cut(s)	307, 484, 514, 541, 725, 811, 1040, 1198
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	889, 1180
LweI	GCATC	4 cut(s)	208, 511, 861, 924
MaeI	CTAG	2 cut(s)	50, 1064
MaeIII	GTNAC	3 cut(s)	602, 802, 1091
MalI	GATC	8 cut(s)	309, 486, 516, 543, 727, 813, 1042, 1200
MboI	GATC	8 cut(s)	307, 484, 514, 541, 725, 811, 1040, 1198
MfeI	CAATTG	2 cut(s)	285, 366
MflI	RGATCY	2 cut(s)	307, 1040
MlsI	TGGCCA	1 cut(s)	1121
MluCI	AATT	6 cut(s)	285, 366, 564, 648, 657, 1182
MluNI	TGGCCA	1 cut(s)	1121
Mox20I	TGGCCA	1 cut(s)	1121
MscI	TGGCCA	1 cut(s)	1121
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	1121
MspI	CCGG	3 cut(s)	398, 576, 780
MspR9I	CCNGG	7 cut(s)	304, 398, 399, 426, 576, 780, 1149
MunI	CAATTG	2 cut(s)	285, 366
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	3 cut(s)	304, 426, 1149
MwoI	GCNNNNNNNGC	6 cut(s)	93, 206, 389, 530, 632, 1055
NciI	CCSGG	4 cut(s)	398, 399, 576, 780
NdeII	GATC	8 cut(s)	307, 484, 514, 541, 725, 811, 1040, 1198
NlaIII	CATG	4 cut(s)	20, 197, 826, 1256
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	802, 1091
NspI	RCATGY	2 cut(s)	826, 1256
PaeI	GCATGC	1 cut(s)	1256
PceI	AGGCCT	1 cut(s)	938
PciSI	GCTCTTC	1 cut(s)	274
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	1130
PflMI	CCANNNNNTGG	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	1147
PkrI	GCNGC	3 cut(s)	789, 904, 1195
PsiI	TTATAA	1 cut(s)	569
Psp6I	CCWGG	3 cut(s)	302, 424, 1147
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	3 cut(s)	302, 424, 1147
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	881
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	2 cut(s)	307, 1040
RsaI	GTAC	2 cut(s)	599, 777
RsaNI	GTAC	2 cut(s)	598, 776
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	788, 903, 1194
Sau3AI	GATC	8 cut(s)	307, 484, 514, 541, 725, 811, 1040, 1198
Sau96I	GGNCC	1 cut(s)	881
ScrFI	CCNGG	7 cut(s)	304, 398, 399, 426, 576, 780, 1149
SfaNI	GCATC	4 cut(s)	208, 511, 861, 924
SfcI	CTRYAG	1 cut(s)	903
SinI	GGWCC	1 cut(s)	881
SmaI	CCCGGG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	201, 467
SmoI	CTYRAG	2 cut(s)	201, 467
SphI	GCATGC	1 cut(s)	1256
Sse9I	AATT	6 cut(s)	285, 366, 564, 648, 657, 1182
SseBI	AGGCCT	1 cut(s)	938
SsiI	CCGC	2 cut(s)	63, 787
SspI	AATATT	2 cut(s)	296, 863
SspMI	CTAG	2 cut(s)	50, 1064
StuI	AGGCCT	1 cut(s)	938
StyD4I	CCNGG	7 cut(s)	302, 396, 397, 424, 574, 778, 1147
TaaI	ACNGT	5 cut(s)	259, 553, 602, 702, 733
TaqI	TCGA	1 cut(s)	519
TasI	AATT	6 cut(s)	285, 366, 564, 648, 657, 1182
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	1 cut(s)	1130
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	802, 1091
TseI	GCWGC	2 cut(s)	902, 1193
Tsp45I	GTSAC	2 cut(s)	802, 1091
TspDTI	ATGAA	6 cut(s)	132, 135, 331, 456, 681, 883
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	1 cut(s)	262
Van91I	CCANNNNNTGG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	881
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	2 cut(s)	826, 1256
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	2 cut(s)	50, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.