Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005586

Physical Location & Seq

Genomic Coordinates Reverse (-)

26242526 .. 26250087

Gene Structure 7562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG226100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGAATGGAACCCATGTGAACCATCAAGGAGGAGGAGGAGGAGGACCAGTGGACACAACTGCTGCAACAATCACCATTAAAGGCATTCTGAGCTTGCTGTTGCAAAATGTTGATGAAGGTGAGAGCAAGAAGAGGCTGATTTCATTGGGTATGGGAGACCCAACTGCCTTTTCTTGCTTCCACACAACCCATATTGCTCAAGAAACTGTGGTTGATGCTATCCAATCAGACAAGTTCAATGGCTATGCTCCCACTGTGGGTCTTCCGCAAACCAGAAGAGCAATTGCTGAATATTTGTCCCGGGATCTTCCATACAATCTAACAACTGATGATGTTTTTGTCACATCTGGTTGCACTCAAGCAATTGATGTCGCATTGGCAATGCTTGCTCGCCCTGGTGCAAATATCTTGCTTCCAAGGCCAGGCTTCCCTATTTATGAACTTTGTTCTGCATTTAGAAATCTTGAGGTTCGGCATTTAGATCTCTTGCAAGACAGTGGCTGGGAGGTTAATCTCGATGCTGTTGAAGCTCTTGCCGATCAGAACACAGTTGCAATGGTAATTATAAACCCCGGAAATCCTTGTGGGAATGTGTACAGTTACCAACATTTGGAGAAGATTGCAGAAACTGCAAAGAAACTGAGAATTCTTGTAATTGCTGATGAAGTTTATGGACACCTTGCCTTTGGGGATAAACCATTTGTGCCAATGGGAGTGTTTGGATCAACTGTTCCTGTTCTTACTCTTGGGTCTCTATCAAAGAGATGGATAGTTCCTGGATGGCGGCTTGGTTGGTTTGTGACAACTGATCCCTGTGGCATGTTTAGAAAACCCAAGGTTATTGAGCGCATTAAGAAATATTTTGATATTTTGGGCGGTCCTGCAACCTTCATTCAGGTTGGTATCTCCAATGCTTGTTTTAAAGTTCTTGAACACATATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006766 GO:0006775 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009110 GO:0009987 GO:0010189 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019439 GO:0019752 GO:0042360 GO:0042362 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

315

Amino Acids

34.33

Weight (kDa)

6.06

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	47 - 286	4.2e-43	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53970
fragaria_vesca	FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340
malus_domestica	MD03G1234800.v1.1 MD11G1255300.v1.1
prunus_persica	Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1
pyrus_communis	pycom11g22570
rosa_chinensis	RchiOBHm_Chr5g0032401
rosa_laevigata	RLG00000033395
rosa_multiflora	Rmu_sc0022287.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048030
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5AG225000 Rh5BG226100 Rh5CG251500 Rh5DG230700
rosa_wichuraiana	Rw5G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AccB7I	CCANNNNNTGG	1 cut(s)	613
AciI	CCGC	3 cut(s)	269, 787, 879
AclWI	GGATC	3 cut(s)	315, 733, 806
AcsI	RAATTY	1 cut(s)	648
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	3 cut(s)	260, 425, 613
AgsI	TTSAA	3 cut(s)	241, 530, 935
AjnI	CCWGG	3 cut(s)	397, 424, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	2 cut(s)	96, 533
AluI	AGCT	2 cut(s)	96, 533
Alw26I	GTCTC	2 cut(s)	153, 759
AlwI	GGATC	3 cut(s)	315, 733, 806
AlwNI	CAGNNNCTG	2 cut(s)	504, 632
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	2 cut(s)	47, 881
AsuC2I	CCSGG	3 cut(s)	304, 305, 576
AsuHPI	GGTGA	2 cut(s)	67, 134
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	2 cut(s)	47, 881
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	3 cut(s)	33, 762, 777
BciT130I	CCWGG	3 cut(s)	399, 426, 780
BcnI	CCSGG	3 cut(s)	304, 305, 576
BcoDI	GTCTC	2 cut(s)	153, 759
BfaI	CTAG	1 cut(s)	946
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	2 cut(s)	66, 788
BlsI	GCNGC	2 cut(s)	67, 789
Bme1390I	CCNGG	6 cut(s)	304, 305, 399, 426, 576, 780
Bme18I	GGWCC	2 cut(s)	47, 881
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	47, 881
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	6 cut(s)	304, 305, 399, 426, 576, 780
BmsI	GCATC	2 cut(s)	208, 511
BpiI	GAAGAC	1 cut(s)	257
BpuEI	CTTGAG	3 cut(s)	186, 345, 488
BpuMI	CCSGG	3 cut(s)	304, 305, 576
BsaI	GGTCTC	2 cut(s)	153, 759
BsaJI	CCNNGG	5 cut(s)	303, 397, 419, 574, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 425, 613
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	2 cut(s)	390, 564
BseBI	CCWGG	3 cut(s)	399, 426, 780
BseDI	CCNNGG	5 cut(s)	303, 397, 419, 574, 837
BseGI	GGATG	1 cut(s)	788
BseLI	CCNNNNNNNGG	3 cut(s)	260, 425, 613
BseMI	GCAATG	2 cut(s)	390, 564
BseMII	CTCAG	2 cut(s)	83, 635
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	4 cut(s)	48, 51, 54, 57
BseXI	GCAGC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	504
BshFI	GGCC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	304, 576
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	260, 425, 613
BsmAI	GTCTC	2 cut(s)	153, 759
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	424
Bso31I	GGTCTC	2 cut(s)	153, 759
BsoBI	CYCGRG	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	5 cut(s)	307, 484, 541, 725, 811
BspACI	CCGC	3 cut(s)	269, 787, 879
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	2 cut(s)	84, 636
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	3 cut(s)	315, 733, 806
BspQI	GCTCTTC	1 cut(s)	274
BspTNI	GGTCTC	2 cut(s)	153, 759
BsrDI	GCAATG	2 cut(s)	390, 564
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	5 cut(s)	303, 397, 419, 574, 837
BssMI	GATC	5 cut(s)	307, 484, 541, 725, 811
BssT1I	CCWWGG	2 cut(s)	419, 837
Bst2UI	CCWGG	3 cut(s)	399, 426, 780
Bst4CI	ACNGT	6 cut(s)	211, 259, 500, 553, 602, 733
Bst6I	CTCTTC	2 cut(s)	128, 274
BstAPI	GCANNNNNTGC	2 cut(s)	389, 632
BstAUI	TGTACA	1 cut(s)	597
BstC8I	GCNNGC	3 cut(s)	98, 390, 394
BstDEI	CTNAG	2 cut(s)	92, 644
BstF5I	GGATG	1 cut(s)	788
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	5 cut(s)	310, 487, 544, 728, 814
BstMAI	GTCTC	2 cut(s)	153, 759
BstMBI	GATC	5 cut(s)	307, 484, 541, 725, 811
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 389, 421, 530, 632
BstNI	CCWGG	3 cut(s)	399, 426, 780
BstNSI	RCATGY	1 cut(s)	826
BstSCI	CCNGG	6 cut(s)	302, 303, 397, 424, 574, 778
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	307, 484
BstYI	RGATCY	2 cut(s)	307, 484
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	788
BtsIMutI	CAGTG	3 cut(s)	57, 255, 505
Cac8I	GCNNGC	3 cut(s)	98, 390, 394
CaiI	CAGNNNCTG	2 cut(s)	504, 632
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	2 cut(s)	47, 881
Cfr9I	CCCGGG	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	2 cut(s)	17, 823
CviJI	RGCY	8 cut(s)	96, 139, 246, 424, 429, 504, 533, 790
CviKI_1	RGCY	8 cut(s)	96, 139, 246, 424, 429, 504, 533, 790
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	92, 644
DpnI	GATC	5 cut(s)	309, 486, 543, 727, 813
DpnII	GATC	5 cut(s)	307, 484, 541, 725, 811
DraI	TTTAAA	1 cut(s)	925
Eam1104I	CTCTTC	2 cut(s)	128, 274
EarI	CTCTTC	2 cut(s)	128, 274
Eco130I	CCWWGG	2 cut(s)	419, 837
Eco31I	GGTCTC	2 cut(s)	153, 759
Eco47I	GGWCC	2 cut(s)	47, 881
Eco88I	CYCGRG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	648
EcoRII	CCWGG	3 cut(s)	397, 424, 778
EcoT14I	CCWWGG	2 cut(s)	419, 837
ErhI	CCWWGG	2 cut(s)	419, 837
FaeI	CATG	2 cut(s)	20, 826
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	16, 822
Fnu4HI	GCNGC	2 cut(s)	66, 788
FokI	GGATG	1 cut(s)	795
Fsp4HI	GCNGC	2 cut(s)	66, 788
FspBI	CTAG	1 cut(s)	946
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	2 cut(s)	66, 788
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	2 cut(s)	304, 576
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	2 cut(s)	20, 826
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HpaII	CCGG	2 cut(s)	304, 576
HphI	GGTGA	2 cut(s)	67, 134
Hpy166II	GTNNAC	3 cut(s)	22, 55, 598
Hpy188I	TCNGA	3 cut(s)	93, 232, 546
Hpy188III	TCNNGA	4 cut(s)	203, 467, 518, 932
Hpy8I	GTNNAC	3 cut(s)	22, 55, 598
HpyAV	CCTTC	2 cut(s)	113, 901
HpyCH4III	ACNGT	6 cut(s)	211, 259, 500, 553, 602, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 389, 421, 530, 632
HpyF3I	CTNAG	2 cut(s)	92, 644
Hsp92II	CATG	2 cut(s)	20, 826
HspAI	GCGC	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	307, 484, 541, 725, 811
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	2 cut(s)	208, 511
MaeI	CTAG	1 cut(s)	946
MaeIII	GTNAC	3 cut(s)	343, 602, 802
MalI	GATC	5 cut(s)	309, 486, 543, 727, 813
MboI	GATC	5 cut(s)	307, 484, 541, 725, 811
MboII	GAAGA	5 cut(s)	145, 257, 291, 302, 631
MfeI	CAATTG	2 cut(s)	285, 366
MflI	RGATCY	2 cut(s)	307, 484
MluCI	AATT	5 cut(s)	285, 366, 564, 648, 657
MnlI	CCTC	8 cut(s)	26, 29, 32, 35, 38, 129, 463, 502
MseI	TTAA	4 cut(s)	81, 513, 855, 924
MspI	CCGG	2 cut(s)	304, 576
MspR9I	CCNGG	6 cut(s)	304, 305, 399, 426, 576, 780
MunI	CAATTG	2 cut(s)	285, 366
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	3 cut(s)	399, 426, 780
MwoI	GCNNNNNNNGC	5 cut(s)	93, 389, 421, 530, 632
NciI	CCSGG	3 cut(s)	304, 305, 576
NdeII	GATC	5 cut(s)	307, 484, 541, 725, 811
NlaIII	CATG	2 cut(s)	20, 826
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	343, 802
NspI	RCATGY	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	274
PctI	GAATGC	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	2 cut(s)	67, 789
PsiI	TTATAA	1 cut(s)	569
Psp6I	CCWGG	3 cut(s)	397, 424, 778
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	3 cut(s)	397, 424, 778
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	47, 881
PstNI	CAGNNNCTG	2 cut(s)	504, 632
PsuI	RGATCY	2 cut(s)	307, 484
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	81, 513, 855, 924
SatI	GCNGC	2 cut(s)	66, 788
Sau3AI	GATC	5 cut(s)	307, 484, 541, 725, 811
Sau96I	GGNCC	2 cut(s)	47, 881
ScrFI	CCNGG	6 cut(s)	304, 305, 399, 426, 576, 780
SetI	ASST	9 cut(s)	98, 124, 474, 513, 535, 684, 843, 893, 903
SfaNI	GCATC	2 cut(s)	208, 511
SinI	GGWCC	2 cut(s)	47, 881
SmaI	CCCGGG	1 cut(s)	305
SmlI	CTYRAG	3 cut(s)	201, 360, 467
SmoI	CTYRAG	3 cut(s)	201, 360, 467
Sse9I	AATT	5 cut(s)	285, 366, 564, 648, 657
SsiI	CCGC	3 cut(s)	269, 787, 879
SspI	AATATT	2 cut(s)	296, 863
SspMI	CTAG	1 cut(s)	946
StyD4I	CCNGG	6 cut(s)	302, 303, 397, 424, 574, 778
StyI	CCWWGG	2 cut(s)	419, 837
TaaI	ACNGT	6 cut(s)	211, 259, 500, 553, 602, 733
TaqI	TCGA	1 cut(s)	519
TasI	AATT	5 cut(s)	285, 366, 564, 648, 657
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	1 cut(s)	790
Tru1I	TTAA	4 cut(s)	81, 513, 855, 924
Tru9I	TTAA	4 cut(s)	81, 513, 855, 924
TscAI	CASTG	3 cut(s)	57, 262, 505
TseFI	GTSAC	2 cut(s)	343, 802
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	2 cut(s)	343, 802
TspDTI	ATGAA	5 cut(s)	132, 135, 456, 681, 883
TspMI	CCCGGG	1 cut(s)	303
TspRI	CASTG	3 cut(s)	57, 262, 505
Van91I	CCANNNNNTGG	1 cut(s)	613
VpaK11BI	GGWCC	2 cut(s)	47, 881
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	1 cut(s)	826
XmaI	CCCGGG	1 cut(s)	303
XspI	CTAG	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.