MD03G1234800.v1.1

Aminotransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
32047258 .. 32061426
14169 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1234800.v1.1.491

Sequence Viewer

Length: 1458 bp
ATGGGGGAAATGGCAAGAGCGTCTGTGGTTGGCTTCAAAGTTCCTCTGAGCCCCTCCATTTGTCGGAACCCCTCCTCCATTTCCCTACGTTTCTCAGACCTCAAACACCAAAAATCCCACTTCCCCAAACTGAAACAAAACACCCCCCCAAAACCCATCAAATCCGCCATCGAAAACGGCACGTCGAACCACCAAGCTGCACCAGTATTGGACACTACTTCTACAACAATCACCATTAAAGGCATCCTCAGCTTGCTGCTGCAGAATGTCAATGAAAACGACGGCAGACGGCTGATTTCTTTGGGCATGGGGGACCCGACTGCCTTCTCTTGCTTCCACACGACACATGTATCGCAGGAAGCCGTCGTCGATGCCCTCCAATCCGACAAGTTCAATGGATATGCTCCCACTGTTGGTCTTCCTCAAACCAGAAGAGCAATTTCTGAATATCTGTCCCGTGACCTTCCATACAAGTTAACATCTGATGATGTTTTCGTCACGTCTGGTTGCACGCAAGCTATTGATATCGCGTTGGCTATGCTTTCTCGCCCTGGTGCCAATATCTTGCTTCCAAAGCCATGCTTCCCTATCTATGAACTTTGCTCTGCTTTTAGACATCTTGAAGTTAGACATTTTGATCTCCTGCAAGAGAATGCCTGGGAGGTTGACCTTGATGCTGTTGAAGCTATTGCAGATCACAACACGGTTGCAATGGTAATTATAAACCCTGGGAATCCTTGTGGGAATGTGTACAGTTACCAACATCTGGAGAAGGTCGCAGAAACTGCAAACAAGCTTCGAATTCCTGTAATTGCTGATGAAGTTTATGGGCATCTCGCCTTTGGGGATAAACCATTTGTGCCAATGGGTGTTTTTGGATCAACTGTTCCGGTTCTTACTCTCGGGTCCCTGTCAAAGAGATGGATAGTTCCTGGATGGCGACTTGGTTGGTTTGTGACGACTGATCCATGTGGCATGTTTGGAACACCCAAGGTTATTGAGCGCTTTAAGAAATATTTTGACATTTTGGGAGGGCCTGCAACTTTCATTCAGGCAGCAGTTCCTCGCATCCTTGAAGAAACCGAAGAGATCTTCTTCAAGAAAACTCTCTATTTCCTGAAGCAGTCCTCAGACATTTGCTGGGATAGGATAAATGAGATCCCTTGTCTTACCTGTCCAAGCAAACCAGAAGGATCCATGGCCGTAATGGTGAAACTAGACCTTTCACTACTGGAAGATATTAATGATGATATCGAGTTTTGTTTCAAGCTCGTAAAAGAGGAAAGCGTGATCTTTCTTCCAGGAAAAGCAGTAGGGCTGAACAACTGGATACGCATTACATTTGCTGCTGATCCATCTTCCGTTGAAGAAGCTTTGAGGAGGACAAAGTCTTTCTGTCAAAGGCATGCCAGAAAATTATCGCTATATGACATAAATGCCATCAACAAGAAATGCTGA

Protein Analysis

486

Amino Acids

53.88

Weight (kDa)

7.13

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 98 - 461 1e-54 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 766
AccII CGCG 1 cut(s) 530
AciI CCGC 1 cut(s) 165
AclWI GGATC 6 cut(s) 886, 959, 1153, 1188, 1201, 1346
AcoI YGGCCR 1 cut(s) 1200
AcsI RAATTY 1 cut(s) 801
AcuI CTGAAG 1 cut(s) 1139
AfaI GTAC 1 cut(s) 752
AfeI AGCGCT 1 cut(s) 1004
AfiI CCNNNNNNNGG 3 cut(s) 63, 413, 766
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 8 cut(s) 37, 394, 623, 683, 1076, 1099, 1267, 1367
AjiI CACGTC 2 cut(s) 183, 501
AjnI CCWGG 5 cut(s) 550, 656, 727, 931, 1300
AloI GAACNNNNNNTCC 4 cut(s) 59, 91, 870, 902
AluBI AGCT 7 cut(s) 197, 252, 518, 686, 796, 1270, 1373
AluI AGCT 7 cut(s) 197, 252, 518, 686, 796, 1270, 1373
AlwI GGATC 6 cut(s) 886, 959, 1153, 1188, 1201, 1346
AlwNI CAGNNNCTG 1 cut(s) 785
Ama87I CYCGRG 1 cut(s) 902
Aor51HI AGCGCT 1 cut(s) 1004
AoxI GGCC 2 cut(s) 1034, 1200
ApeKI GCWGC 5 cut(s) 197, 256, 259, 1055, 1346
ApoI RAATTY 1 cut(s) 801
AseI ATTAAT 1 cut(s) 1242
AspLEI GCGC 1 cut(s) 1005
AspS9I GGNCC 3 cut(s) 313, 906, 1034
AsuHPI GGTGA 2 cut(s) 223, 1222
AsuII TTCGAA 1 cut(s) 799
AvaI CYCGRG 1 cut(s) 902
AvaII GGWCC 2 cut(s) 313, 906
BaeI ACNNNNGTAYC 2 cut(s) 333, 366
BamHI GGATCC 1 cut(s) 1193
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 410
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 5 cut(s) 184, 243, 246, 1067, 1333
BccI CCATC 6 cut(s) 164, 176, 915, 930, 1363, 1448
BceAI ACGGC 5 cut(s) 193, 298, 305, 347, 1187
BciT130I CCWGG 5 cut(s) 552, 658, 729, 933, 1302
BciVI GTATCC 1 cut(s) 1323
BfaI CTAG 1 cut(s) 1217
BfmI CTRYAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 1006
BfuI GTATCC 1 cut(s) 1323
BglII AGATCT 1 cut(s) 1089
BisI GCNGC 5 cut(s) 198, 257, 260, 1056, 1347
BlsI GCNGC 5 cut(s) 199, 258, 261, 1057, 1348
Bme1390I CCNGG 5 cut(s) 552, 658, 729, 933, 1302
Bme18I GGWCC 2 cut(s) 313, 906
BmeT110I CYCGRG 1 cut(s) 902
BmgBI CACGTC 2 cut(s) 183, 501
BmgT120I GGNCC 3 cut(s) 313, 906, 1034
BmiI GGNNCC 7 cut(s) 68, 314, 315, 556, 907, 908, 1195
BmrFI CCNGG 5 cut(s) 552, 658, 729, 933, 1302
BmsI GCATC 5 cut(s) 252, 361, 664, 841, 1077
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 799
BsaJI CCNNGG 6 cut(s) 550, 657, 727, 728, 990, 1197
BsaWI WCCGGW 1 cut(s) 889
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 413, 766
Bse1I ACTGG 3 cut(s) 203, 1236, 1331
Bse3DI GCAATG 1 cut(s) 717
BseBI CCWGG 5 cut(s) 552, 658, 729, 933, 1302
BseDI CCNNGG 6 cut(s) 550, 657, 727, 728, 990, 1197
BseGI GGATG 3 cut(s) 243, 941, 1068
BseLI CCNNNNNNNGG 3 cut(s) 63, 413, 766
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 4 cut(s) 38, 108, 262, 1143
BseNI ACTGG 3 cut(s) 203, 1236, 1331
BseRI GAGGAG 2 cut(s) 64, 1393
BseXI GCAGC 5 cut(s) 184, 243, 246, 1067, 1333
BseYI CCCAGC 1 cut(s) 1140
BsgI GTGCAG 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 2 cut(s) 1036, 1202
BshNI GGYRCC 1 cut(s) 554
BsiHKCI CYCGRG 1 cut(s) 902
BsiSI CCGG 1 cut(s) 890
BslFI GGGAC 3 cut(s) 326, 439, 892
BslI CCNNNNNNNGG 3 cut(s) 63, 413, 766
BsmFI GGGAC 3 cut(s) 326, 439, 892
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 2 cut(s) 1036, 1202
BsoBI CYCGRG 1 cut(s) 902
Bsp119I TTCGAA 1 cut(s) 799
Bsp1286I GDGCHC 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 9 cut(s) 637, 694, 878, 964, 1089, 1158, 1193, 1290, 1351
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 1 cut(s) 165
BspANI GGCC 2 cut(s) 1036, 1202
BspCNI CTCAG 4 cut(s) 39, 107, 261, 1142
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 7 cut(s) 68, 314, 315, 556, 907, 908, 1195
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 6 cut(s) 886, 959, 1153, 1188, 1201, 1346
BspQI GCTCTTC 1 cut(s) 427
BspT104I TTCGAA 1 cut(s) 799
BspT107I GGYRCC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 717
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 3 cut(s) 203, 1236, 1331
BssECI CCNNGG 6 cut(s) 550, 657, 727, 728, 990, 1197
BssMI GATC 9 cut(s) 637, 694, 878, 964, 1089, 1158, 1193, 1290, 1351
BssT1I CCWWGG 2 cut(s) 990, 1197
Bst2UI CCWGG 5 cut(s) 552, 658, 729, 933, 1302
Bst4CI ACNGT 4 cut(s) 412, 706, 755, 886
Bst6I CTCTTC 2 cut(s) 427, 1080
BstAPI GCANNNNNTGC 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 750
BstBI TTCGAA 1 cut(s) 799
BstC8I GCNNGC 5 cut(s) 254, 512, 516, 1038, 1407
BstDEI CTNAG 4 cut(s) 47, 94, 248, 1129
BstDSI CCRYGG 1 cut(s) 1197
BstF5I GGATG 3 cut(s) 243, 941, 1068
BstFNI CGCG 1 cut(s) 530
BstH2I RGCGCY 1 cut(s) 1006
BstHHI GCGC 1 cut(s) 1005
BstKTI GATC 9 cut(s) 640, 697, 881, 967, 1092, 1161, 1196, 1293, 1354
BstMBI GATC 9 cut(s) 637, 694, 878, 964, 1089, 1158, 1193, 1290, 1351
BstMWI GCNNNNNNNGC 4 cut(s) 249, 574, 683, 785
BstNI CCWGG 5 cut(s) 552, 658, 729, 933, 1302
BstNSI RCATGY 3 cut(s) 350, 979, 1409
BstSCI CCNGG 5 cut(s) 550, 656, 727, 931, 1300
BstSFI CTRYAG 1 cut(s) 260
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 5 cut(s) 184, 243, 246, 1067, 1333
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 3 cut(s) 1089, 1158, 1193
BstYI RGATCY 3 cut(s) 1089, 1158, 1193
BsuI GTATCC 1 cut(s) 1323
BsuRI GGCC 2 cut(s) 1036, 1202
BtgI CCRYGG 1 cut(s) 1197
BtrI CACGTC 2 cut(s) 183, 501
BtsCI GGATG 3 cut(s) 243, 941, 1068
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 5 cut(s) 254, 512, 516, 1038, 1407
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 1005
Cfr13I GGNCC 3 cut(s) 313, 906, 1034
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 751
CviAII CATG 7 cut(s) 307, 347, 579, 969, 976, 1198, 1406
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 4 cut(s) 47, 94, 248, 1129
DpnI GATC 9 cut(s) 639, 696, 880, 966, 1091, 1160, 1195, 1292, 1353
DpnII GATC 9 cut(s) 637, 694, 878, 964, 1089, 1158, 1193, 1290, 1351
EaeI YGGCCR 1 cut(s) 1200
Eam1104I CTCTTC 2 cut(s) 427, 1080
EarI CTCTTC 2 cut(s) 427, 1080
EciI GGCGGA 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 990, 1197
Eco24I GRGCYC 1 cut(s) 53
Eco32I GATATC 2 cut(s) 526, 1252
Eco47I GGWCC 2 cut(s) 313, 906
Eco47III AGCGCT 1 cut(s) 1004
Eco57I CTGAAG 1 cut(s) 1139
Eco88I CYCGRG 1 cut(s) 902
EcoO109I RGGNCCY 3 cut(s) 313, 906, 1034
EcoRI GAATTC 1 cut(s) 801
EcoRII CCWGG 5 cut(s) 550, 656, 727, 931, 1300
EcoRV GATATC 2 cut(s) 526, 1252
EcoT14I CCWWGG 2 cut(s) 990, 1197
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 990, 1197
FaeI CATG 7 cut(s) 310, 350, 582, 972, 979, 1201, 1409
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 3 cut(s) 326, 439, 892
FatI CATG 7 cut(s) 306, 346, 578, 968, 975, 1197, 1405
Fnu4HI GCNGC 5 cut(s) 198, 257, 260, 1056, 1347
FokI GGATG 3 cut(s) 230, 948, 1055
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 5 cut(s) 198, 257, 260, 1056, 1347
FspBI CTAG 1 cut(s) 1217
GlaI GCGC 1 cut(s) 1004
GluI GCNGC 5 cut(s) 198, 257, 260, 1056, 1347
GsaI CCCAGC 1 cut(s) 1144
GsuI CTGGAG 1 cut(s) 788
HaeII RGCGCY 1 cut(s) 1006
HaeIII GGCC 2 cut(s) 1036, 1202
HapII CCGG 1 cut(s) 890
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 1005
Hin1II CATG 7 cut(s) 310, 350, 582, 972, 979, 1201, 1409
Hin6I GCGC 1 cut(s) 1003
HinP1I GCGC 1 cut(s) 1003
HincII GTYRAC 2 cut(s) 477, 667
HindII GTYRAC 2 cut(s) 477, 667
HindIII AAGCTT 2 cut(s) 794, 1371
HinfI GANTC 1 cut(s) 733
HpaI GTTAAC 1 cut(s) 477
HpaII CCGG 1 cut(s) 890
HphI GGTGA 2 cut(s) 223, 1222
Hpy166II GTNNAC 3 cut(s) 477, 667, 751
Hpy188I TCNGA 7 cut(s) 48, 66, 97, 385, 445, 484, 1132
Hpy188III TCNNGA 4 cut(s) 620, 767, 1099, 1117
Hpy8I GTNNAC 3 cut(s) 477, 667, 751
Hpy99I CGWCG 4 cut(s) 187, 284, 368, 371
HpyAV CCTTC 4 cut(s) 334, 473, 766, 1184
HpyCH4III ACNGT 4 cut(s) 412, 706, 755, 886
HpyCH4IV ACGT 3 cut(s) 88, 182, 500
HpyCH4V TGCA 8 cut(s) 200, 262, 510, 646, 692, 710, 788, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 574, 683, 785
HpyF3I CTNAG 4 cut(s) 47, 94, 248, 1129
HpySE526I ACGT 3 cut(s) 88, 182, 500
Hsp92II CATG 7 cut(s) 310, 350, 582, 972, 979, 1201, 1409
HspAI GCGC 1 cut(s) 1003
KflI GGGWCCC 2 cut(s) 313, 906
KspAI GTTAAC 1 cut(s) 477
Kzo9I GATC 9 cut(s) 637, 694, 878, 964, 1089, 1158, 1193, 1290, 1351
LguI GCTCTTC 1 cut(s) 427
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 5 cut(s) 184, 243, 246, 1067, 1333
LweI GCATC 5 cut(s) 252, 361, 664, 841, 1077
MaeI CTAG 1 cut(s) 1217
MaeII ACGT 3 cut(s) 88, 182, 500
MaeIII GTNAC 4 cut(s) 458, 496, 755, 955
MalI GATC 9 cut(s) 639, 696, 880, 966, 1091, 1160, 1195, 1292, 1353
MboI GATC 9 cut(s) 637, 694, 878, 964, 1089, 1158, 1193, 1290, 1351
MflI RGATCY 3 cut(s) 1089, 1158, 1193
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 5 cut(s) 438, 717, 801, 810, 1415
MmeI TCCRAC 2 cut(s) 44, 408
MseI TTAA 4 cut(s) 237, 476, 1008, 1242
MspI CCGG 1 cut(s) 890
MspR9I CCNGG 5 cut(s) 552, 658, 729, 933, 1302
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 5 cut(s) 552, 658, 729, 933, 1302
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 249, 574, 683, 785
NcoI CCATGG 1 cut(s) 1197
NdeII GATC 9 cut(s) 637, 694, 878, 964, 1089, 1158, 1193, 1290, 1351
NlaIII CATG 7 cut(s) 310, 350, 582, 972, 979, 1201, 1409
NlaIV GGNNCC 7 cut(s) 68, 314, 315, 556, 907, 908, 1195
NmuCI GTSAC 3 cut(s) 458, 496, 955
NspI RCATGY 3 cut(s) 350, 979, 1409
NspV TTCGAA 1 cut(s) 799
PaeI GCATGC 1 cut(s) 1409
PasI CCCWGGG 1 cut(s) 728
PciI ACATGT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 427
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 1 cut(s) 733
PflFI GACNNNGTC 1 cut(s) 1387
PflMI CCANNNNNTGG 1 cut(s) 766
PfoI TCCNGGA 2 cut(s) 931, 1300
PkrI GCNGC 5 cut(s) 199, 258, 261, 1057, 1348
PpuMI RGGWCCY 2 cut(s) 313, 906
PscI ACATGT 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 1242
PsiI TTATAA 1 cut(s) 722
Psp5II RGGWCCY 2 cut(s) 313, 906
Psp6I CCWGG 5 cut(s) 550, 656, 727, 931, 1300
PspFI CCCAGC 1 cut(s) 1140
PspGI CCWGG 5 cut(s) 550, 656, 727, 931, 1300
PspN4I GGNNCC 7 cut(s) 68, 314, 315, 556, 907, 908, 1195
PspPI GGNCC 3 cut(s) 313, 906, 1034
PspPPI RGGWCCY 2 cut(s) 313, 906
PstI CTGCAG 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 3 cut(s) 1089, 1158, 1193
PsyI GACNNNGTC 1 cut(s) 1387
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
SapI GCTCTTC 1 cut(s) 427
SaqAI TTAA 4 cut(s) 237, 476, 1008, 1242
SatI GCNGC 5 cut(s) 198, 257, 260, 1056, 1347
Sau3AI GATC 9 cut(s) 637, 694, 878, 964, 1089, 1158, 1193, 1290, 1351
Sau96I GGNCC 3 cut(s) 313, 906, 1034
ScrFI CCNGG 5 cut(s) 552, 658, 729, 933, 1302
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 5 cut(s) 252, 361, 664, 841, 1077
SfcI CTRYAG 1 cut(s) 260
SfuI TTCGAA 1 cut(s) 799
SinI GGWCC 2 cut(s) 313, 906
SphI GCATGC 1 cut(s) 1409
Sse9I AATT 5 cut(s) 438, 717, 801, 810, 1415
SsiI CCGC 1 cut(s) 165
SspI AATATT 1 cut(s) 1016
SspMI CTAG 1 cut(s) 1217
StyD4I CCNGG 5 cut(s) 550, 656, 727, 931, 1300
StyI CCWWGG 2 cut(s) 990, 1197
TaaI ACNGT 4 cut(s) 412, 706, 755, 886
TaiI ACGT 3 cut(s) 91, 185, 503
TaqI TCGA 5 cut(s) 171, 185, 369, 799, 1254
TasI AATT 5 cut(s) 438, 717, 801, 810, 1415
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 4 cut(s) 237, 476, 1008, 1242
Tru9I TTAA 4 cut(s) 237, 476, 1008, 1242
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 3 cut(s) 458, 496, 955
TseI GCWGC 5 cut(s) 197, 256, 259, 1055, 1346
Tsp45I GTSAC 3 cut(s) 458, 496, 955
TspDTI ATGAA 4 cut(s) 288, 609, 834, 1036
TspGWI ACGGA 1 cut(s) 1351
TspRI CASTG 1 cut(s) 415
Tth111I GACNNNGTC 1 cut(s) 1387
Van91I CCANNNNNTGG 1 cut(s) 766
VpaK11BI GGWCC 2 cut(s) 313, 906
VspI ATTAAT 1 cut(s) 1242
XapI RAATTY 1 cut(s) 801
XceI RCATGY 3 cut(s) 350, 979, 1409
XcmI CCANNNNNNNNNTGG 1 cut(s) 1204
XspI CTAG 1 cut(s) 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.