Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005586

Physical Location & Seq

Genomic Coordinates Reverse (-)

10317613 .. 10323785

Gene Structure 6173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G174400.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAAAATGGGGCTGTGAACCAGCAAATACCAGTGGACACAACTTCTGCAACAATCACCATAAAAGGCATCCTGAGCTTGCTGTTGCAGAATGTGGATGAAAATGATAACAAAAGGCTGATTTCATTGGGGATGGGCGACCCAACTGCCTATTCTTGCTTCCACACAACCCAAGTGGCTCAAGAAGCTGTTGTTGATGCAATCCAATCTGACAAGTTCAATGGCTATGCTCCTACTGTTGGCCTTCCTCAAACCAGAAGAGCAATTGCTGAATATCTGTCCCGTGATCTTCCATACAAGCTAACATCGGATGATGTTTTTGTCACATCTGGTTGCACACAAGCTATTGATGTTGCATTGGCAATGCTTACGCGTCCTGGTGCCAATATCTTGCTTCCAAGGCCAGGCTTCCCTATTTATGAACTTTGTTCTGCTTTTCGACATCTTGAGGTTCGACATTTTGATCTCCTGCAAGAGAACGCCTGGGAGGTTGATCTTGATGCTGTTGAAGCTCTTGCAGATCACAACACAGTTGCAATGGTAATTATAAACCCTGGGAATCCTTGTGGGAATGTATACAGTTACCAACATCTGGAAAAGATTGCAGAAACTGCAAAAAAGCTTAGATTTTTAGTAATTGCTGATGAAGTTTATGGGCATCTGGCTATTGGAGGTAAACCATTTGTGCCAATGGGAGTCTTTGGATCAACTGTTCCTGTTCTTACTCTTGGGTCCCTGTCAAAGAGATGGATAGTTCCTGGATGGCGACTTGGTTGGTTTGTGACAAGTGATCCGTGTGGCATGTTTAGAAAACCCAAGGTTGTTGAGCGCATTAAGAAATATTTTGATATTTTGGGAGGACCTGCAACCTTCATTCAGGCAGCAGTTCCGCGCATCATCGAGCAAACTGAAGAGGTTTTCTTTAAGAAAACTATCTATTTACTGAAGCAGTCCTCAGATATTTGTTGCGAACGGATAAATGAGATTCCTTGTATTACCTGTCCAAACAAACCAGAAGGATCTATGGCTGTAATGGTGAAACTAGACCTTTCACTACTGGAAGATATTACCGATGATATTGAGTTTTGTTTCAAGCTGGCTAAAGAGGAATCTGTGATCTTTCTTCCAGGGACAGCAGTAGGGTTGAAAAATTGGCTACGTGTTACATTTGCTGCCGATCCAAACTCTATTGAAGAAGCTTTAAGGAGGACAAAATGTTTCTATCAAAGGCATGCCAGAAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006766 GO:0006775 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009110 GO:0009987 GO:0010189 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019439 GO:0019752 GO:0042360 GO:0042362 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

416

Amino Acids

46.18

Weight (kDa)

5.89

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53970
fragaria_vesca	FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340
malus_domestica	MD03G1234800.v1.1 MD11G1255300.v1.1
prunus_persica	Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1
pyrus_communis	pycom11g22570
rosa_chinensis	RchiOBHm_Chr5g0032401
rosa_laevigata	RLG00000033395
rosa_multiflora	Rmu_sc0022287.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048030
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5AG225000 Rh5BG226100 Rh5CG251500 Rh5DG230700
rosa_wichuraiana	Rw5G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	871
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	2 cut(s)	373, 892
AciI	CCGC	1 cut(s)	890
AclWI	GGATC	4 cut(s)	712, 785, 1027, 1172
AcuI	CTGAAG	2 cut(s)	930, 965
AfiI	CCNNNNNNNGG	3 cut(s)	239, 404, 592
AflIII	ACRYGT	2 cut(s)	371, 1159
AgsI	TTSAA	5 cut(s)	220, 509, 1093, 1147, 1193
AjnI	CCWGG	6 cut(s)	376, 403, 482, 553, 757, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
AloI	GAACNNNNNNTCC	2 cut(s)	696, 728
AluBI	AGCT	8 cut(s)	78, 188, 301, 344, 512, 622, 1096, 1199
AluI	AGCT	8 cut(s)	78, 188, 301, 344, 512, 622, 1096, 1199
AlwI	GGATC	4 cut(s)	712, 785, 1027, 1172
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	241, 401
ApeKI	GCWGC	2 cut(s)	881, 1172
AspLEI	GCGC	2 cut(s)	831, 894
AspS9I	GGNCC	2 cut(s)	732, 860
AsuHPI	GGTGA	2 cut(s)	49, 1048
AvaII	GGWCC	2 cut(s)	732, 860
BanI	GGYRCC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	893, 1159
BccI	CCATC	3 cut(s)	127, 741, 756
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	6 cut(s)	378, 405, 484, 555, 759, 1128
BfaI	CTAG	1 cut(s)	1043
BfuAI	ACCTGC	1 cut(s)	871
BisI	GCNGC	2 cut(s)	882, 1173
BlsI	GCNGC	2 cut(s)	883, 1174
Bme1390I	CCNGG	6 cut(s)	378, 405, 484, 555, 759, 1128
Bme18I	GGWCC	2 cut(s)	732, 860
BmgT120I	GGNCC	2 cut(s)	732, 860
BmiI	GGNNCC	3 cut(s)	382, 733, 734
BmrFI	CCNGG	6 cut(s)	378, 405, 484, 555, 759, 1128
BmsI	GCATC	5 cut(s)	78, 187, 490, 667, 903
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	2 cut(s)	165, 467
BsaAI	YACGTR	1 cut(s)	1160
BsaJI	CCNNGG	6 cut(s)	398, 483, 553, 554, 816, 1127
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 404, 592
Bse1I	ACTGG	2 cut(s)	32, 1062
Bse3DI	GCAATG	2 cut(s)	369, 543
BseBI	CCWGG	6 cut(s)	378, 405, 484, 555, 759, 1128
BseDI	CCNNGG	6 cut(s)	398, 483, 553, 554, 816, 1127
BseGI	GGATG	5 cut(s)	69, 103, 138, 316, 767
BseLI	CCNNNNNNNGG	3 cut(s)	239, 404, 592
BseMI	GCAATG	2 cut(s)	369, 543
BseMII	CTCAG	2 cut(s)	65, 969
BseNI	ACTGG	2 cut(s)	32, 1062
BseXI	GCAGC	2 cut(s)	893, 1159
Bsh1236I	CGCG	2 cut(s)	373, 892
BshFI	GGCC	2 cut(s)	243, 403
BshNI	GGYRCC	1 cut(s)	380
BslFI	GGGAC	3 cut(s)	265, 718, 1144
BslI	CCNNNNNNNGG	3 cut(s)	239, 404, 592
BsmFI	GGGAC	3 cut(s)	265, 718, 1144
BsnI	GGCC	2 cut(s)	243, 403
Bsp143I	GATC	9 cut(s)	286, 463, 493, 520, 704, 790, 1019, 1116, 1177
BspACI	CCGC	1 cut(s)	890
BspANI	GGCC	2 cut(s)	243, 403
BspCNI	CTCAG	2 cut(s)	66, 968
BspFNI	CGCG	2 cut(s)	373, 892
BspLI	GGNNCC	3 cut(s)	382, 733, 734
BspMI	ACCTGC	1 cut(s)	871
BspPI	GGATC	4 cut(s)	712, 785, 1027, 1172
BspQI	GCTCTTC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	369, 543
BsrI	ACTGG	2 cut(s)	32, 1062
BssECI	CCNNGG	6 cut(s)	398, 483, 553, 554, 816, 1127
BssMI	GATC	9 cut(s)	286, 463, 493, 520, 704, 790, 1019, 1116, 1177
BssNAI	GTATAC	1 cut(s)	577
BssT1I	CCWWGG	2 cut(s)	398, 816
Bst1107I	GTATAC	1 cut(s)	577
Bst2UI	CCWGG	6 cut(s)	378, 405, 484, 555, 759, 1128
Bst4CI	ACNGT	4 cut(s)	238, 532, 581, 712
Bst6I	CTCTTC	2 cut(s)	253, 906
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	1160
BstC8I	GCNNGC	3 cut(s)	80, 1098, 1233
BstDEI	CTNAG	3 cut(s)	74, 623, 955
BstF5I	GGATG	5 cut(s)	69, 103, 138, 316, 767
BstFNI	CGCG	2 cut(s)	373, 892
BstHHI	GCGC	2 cut(s)	831, 894
BstKTI	GATC	9 cut(s)	289, 466, 496, 523, 707, 793, 1022, 1119, 1180
BstMBI	GATC	9 cut(s)	286, 463, 493, 520, 704, 790, 1019, 1116, 1177
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 185, 400, 509, 611
BstNI	CCWGG	6 cut(s)	378, 405, 484, 555, 759, 1128
BstNSI	RCATGY	2 cut(s)	805, 1235
BstSCI	CCNGG	6 cut(s)	376, 403, 482, 553, 757, 1126
BstUI	CGCG	2 cut(s)	373, 892
BstV1I	GCAGC	2 cut(s)	893, 1159
BstX2I	RGATCY	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	1019
BstZ17I	GTATAC	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	243, 403
BtsCI	GGATG	5 cut(s)	69, 103, 138, 316, 767
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	871
Cac8I	GCNNGC	3 cut(s)	80, 1098, 1233
CaiI	CAGNNNCTG	1 cut(s)	611
CfoI	GCGC	2 cut(s)	831, 894
Cfr13I	GGNCC	2 cut(s)	732, 860
CseI	GACGC	1 cut(s)	362
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	2 cut(s)	802, 1232
DdeI	CTNAG	3 cut(s)	74, 623, 955
DpnI	GATC	9 cut(s)	288, 465, 495, 522, 706, 792, 1021, 1118, 1179
DpnII	GATC	9 cut(s)	286, 463, 493, 520, 704, 790, 1019, 1116, 1177
Eam1104I	CTCTTC	2 cut(s)	253, 906
EarI	CTCTTC	2 cut(s)	253, 906
Eco130I	CCWWGG	2 cut(s)	398, 816
Eco47I	GGWCC	2 cut(s)	732, 860
Eco57I	CTGAAG	2 cut(s)	930, 965
EcoO109I	RGGNCCY	2 cut(s)	732, 860
EcoRII	CCWGG	6 cut(s)	376, 403, 482, 553, 757, 1126
EcoT14I	CCWWGG	2 cut(s)	398, 816
ErhI	CCWWGG	2 cut(s)	398, 816
FaeI	CATG	2 cut(s)	805, 1235
FaqI	GGGAC	3 cut(s)	265, 718, 1144
FatI	CATG	2 cut(s)	801, 1231
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	882, 1173
FokI	GGATG	5 cut(s)	56, 110, 145, 323, 774
Fsp4HI	GCNGC	2 cut(s)	882, 1173
FspBI	CTAG	1 cut(s)	1043
GlaI	GCGC	2 cut(s)	830, 893
GluI	GCNGC	2 cut(s)	882, 1173
HaeIII	GGCC	2 cut(s)	243, 403
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	2 cut(s)	831, 894
Hin1II	CATG	2 cut(s)	805, 1235
Hin6I	GCGC	2 cut(s)	829, 892
HinP1I	GCGC	2 cut(s)	829, 892
HindIII	AAGCTT	2 cut(s)	620, 1197
HinfI	GANTC	4 cut(s)	559, 696, 985, 1109
HphI	GGTGA	2 cut(s)	49, 1048
Hpy166II	GTNNAC	4 cut(s)	19, 37, 577, 677
Hpy188I	TCNGA	3 cut(s)	211, 310, 958
Hpy188III	TCNNGA	5 cut(s)	73, 182, 446, 497, 593
Hpy8I	GTNNAC	4 cut(s)	19, 37, 577, 677
HpyAV	CCTTC	3 cut(s)	254, 880, 1010
HpyCH4III	ACNGT	4 cut(s)	238, 532, 581, 712
HpyCH4IV	ACGT	1 cut(s)	1159
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 185, 400, 509, 611
HpyF3I	CTNAG	3 cut(s)	74, 623, 955
HpySE526I	ACGT	1 cut(s)	1159
Hsp92II	CATG	2 cut(s)	805, 1235
HspAI	GCGC	2 cut(s)	829, 892
KflI	GGGWCCC	1 cut(s)	732
Kzo9I	GATC	9 cut(s)	286, 463, 493, 520, 704, 790, 1019, 1116, 1177
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	2 cut(s)	893, 1159
LweI	GCATC	5 cut(s)	78, 187, 490, 667, 903
MaeI	CTAG	1 cut(s)	1043
MaeII	ACGT	1 cut(s)	1159
MaeIII	GTNAC	4 cut(s)	322, 581, 781, 1162
MalI	GATC	9 cut(s)	288, 465, 495, 522, 706, 792, 1021, 1118, 1179
MboI	GATC	9 cut(s)	286, 463, 493, 520, 704, 790, 1019, 1116, 1177
MboII	GAAGA	6 cut(s)	270, 281, 923, 1073, 1115, 1205
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	1019
MluCI	AATT	5 cut(s)	264, 543, 636, 1150, 1241
MluI	ACGCGT	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	705
MnlI	CCTC	9 cut(s)	258, 442, 481, 665, 851, 907, 964, 1099, 1200
MseI	TTAA	3 cut(s)	834, 924, 1202
MspR9I	CCNGG	6 cut(s)	378, 405, 484, 555, 759, 1128
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	6 cut(s)	378, 405, 484, 555, 759, 1128
MvnI	CGCG	2 cut(s)	373, 892
MwoI	GCNNNNNNNGC	5 cut(s)	75, 185, 400, 509, 611
NdeII	GATC	9 cut(s)	286, 463, 493, 520, 704, 790, 1019, 1116, 1177
NlaIII	CATG	2 cut(s)	805, 1235
NlaIV	GGNNCC	3 cut(s)	382, 733, 734
NmuCI	GTSAC	2 cut(s)	322, 781
NspI	RCATGY	2 cut(s)	805, 1235
PaeI	GCATGC	1 cut(s)	1235
PasI	CCCWGGG	1 cut(s)	554
PciSI	GCTCTTC	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	559, 985, 1109
PflMI	CCANNNNNTGG	1 cut(s)	592
PfoI	TCCNGGA	1 cut(s)	757
PkrI	GCNGC	2 cut(s)	883, 1174
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
Ppu21I	YACGTR	1 cut(s)	1160
PpuMI	RGGWCCY	2 cut(s)	732, 860
PsiI	TTATAA	1 cut(s)	548
Psp5II	RGGWCCY	2 cut(s)	732, 860
Psp6I	CCWGG	6 cut(s)	376, 403, 482, 553, 757, 1126
PspGI	CCWGG	6 cut(s)	376, 403, 482, 553, 757, 1126
PspN4I	GGNNCC	3 cut(s)	382, 733, 734
PspPI	GGNCC	2 cut(s)	732, 860
PspPPI	RGGWCCY	2 cut(s)	732, 860
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	1019
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	834, 924, 1202
SatI	GCNGC	2 cut(s)	882, 1173
Sau3AI	GATC	9 cut(s)	286, 463, 493, 520, 704, 790, 1019, 1116, 1177
Sau96I	GGNCC	2 cut(s)	732, 860
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	6 cut(s)	378, 405, 484, 555, 759, 1128
SfaNI	GCATC	5 cut(s)	78, 187, 490, 667, 903
SinI	GGWCC	2 cut(s)	732, 860
SmlI	CTYRAG	2 cut(s)	180, 446
SmoI	CTYRAG	2 cut(s)	180, 446
SphI	GCATGC	1 cut(s)	1235
Sse9I	AATT	5 cut(s)	264, 543, 636, 1150, 1241
SsiI	CCGC	1 cut(s)	890
SspI	AATATT	1 cut(s)	842
SspMI	CTAG	1 cut(s)	1043
StyD4I	CCNGG	6 cut(s)	376, 403, 482, 553, 757, 1126
StyI	CCWWGG	2 cut(s)	398, 816
TaaI	ACNGT	4 cut(s)	238, 532, 581, 712
TaiI	ACGT	1 cut(s)	1162
TaqI	TCGA	3 cut(s)	439, 454, 900
TasI	AATT	5 cut(s)	264, 543, 636, 1150, 1241
TfiI	GAWTC	3 cut(s)	559, 985, 1109
Tru1I	TTAA	3 cut(s)	834, 924, 1202
Tru9I	TTAA	3 cut(s)	834, 924, 1202
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	322, 781
TseI	GCWGC	2 cut(s)	881, 1172
Tsp45I	GTSAC	2 cut(s)	322, 781
TspDTI	ATGAA	5 cut(s)	114, 114, 435, 660, 862
TspGWI	ACGGA	2 cut(s)	783, 988
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	732, 860
XceI	RCATGY	2 cut(s)	805, 1235
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.