Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005586

Physical Location & Seq

Genomic Coordinates Forward (+)

68055500 .. 68062440

Gene Structure 6941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAGAATGGAACCCATGTGAACCATCAAGGAGGAGGAGGACTAGTGGACACAACTGCTGCAACAATCACCATTAAAGGCATTCTGAGCTTGCTATTGCAAAATGTTGATGAAGGTGAGAGCAAGAAGAGGCTGATTTCATTGGGTATGGGAGACCCAACTGCCTTTTCTTGCTTCCACACAACCCATATTGCTCAAGAAGCTGTGGTTGATGCTGTCCAATCAGACAAGTTCAATGGCTATGCTCCCACTGTGGGTCTTCCTCAAACCAGAAGAGCAATTGCTGAATATTTGTCCCGGGATCTTCCATACAATCTAACAACAGATGATGTTTTTGTCACATCTGGTTGCACACAAGCAATTGATGTAGCATTGGCAATGCTTGCTCGCCCTGGTGCAAATATCTTGCTTCCAAGGCCAGGCTTCCCTATTTATGAACTTTGTTCTGCATTTAGAAATCTTGAGGTTCGGCATTTAGATCTCTTGCAAGAGAGTGGCTGGGAGGTTAATCTCGATGCTGTTGAAGCTCTTGCCGATCAGAACACAGTTGCAATGGTAATTATAAACCCCGGAAATCCTTGTGGGAATGTGTACAGTTACCAACATTTGGAGAAGATTGCAGAAACTGCAAAGAAACTGAGAATTCTTGTAATTGCTGATGAAGTTTATGGACACCTTGCCTTTGGGGATAAACCGTTTGTGCCAATGGGAGTGTTTGGATCAACAGTTCCTGTTCTTACTCTTGGGTCTCTATCAAAGAGATGGATAGTTCCTGGATGGCGGCTTGGTTGGTTTGTGACAACTGATCCCTGTGGCATGTTTAGAAAACCCAAGGTTATTGAGCGCATTAAGAAATATTTTGATATTTTGGGCGGTCCTGCAACCTTCATTCAGATCCTGCAAGTTGCAGCTTCTGGCTTCAAAACAGTTCCGCAAATCCTTGAGAAAACTGAAGAGGTCTTCTTCAGGAAAACTATCTATTTATTGAAGCAGTCATCAGATATTTGTTCTGATAGGATAAAGGACATCCCTTGTCTTACCTGTCCAAACAAACCAGAGGGATCTATGGCTGTAATGGTGAAACTAGACCTTTCACTACTGGAAGATATTAGTGATGATATTGATTTTTGTTTCAAGCTGGCCAAAGAGGAATCTGTTATCTTTCTTCCAGGAACAGCAGTAGGGCTGAAAAACTGGATACGCGTTACATTTGCTGCTGATCCACCTTCTCTTGAAGAAGCTTTTAGGAGGACGAAATCTTTCTATCAAAAGCATGCCAGACAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006766 GO:0006775 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009110 GO:0009987 GO:0010189 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019439 GO:0019752 GO:0042360 GO:0042362 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

429

Amino Acids

47.36

Weight (kDa)

6.11

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	45 - 415	3.2e-53	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53970
fragaria_vesca	FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340
malus_domestica	MD03G1234800.v1.1 MD11G1255300.v1.1
prunus_persica	Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1
pyrus_communis	pycom11g22570
rosa_chinensis	RchiOBHm_Chr5g0032401
rosa_laevigata	RLG00000033395
rosa_multiflora	Rmu_sc0022287.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048030
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5AG225000 Rh5BG226100 Rh5CG251500 Rh5DG230700
rosa_wichuraiana	Rw5G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccII	CGCG	1 cut(s)	1203
AciI	CCGC	3 cut(s)	781, 873, 932
AclWI	GGATC	6 cut(s)	309, 727, 800, 889, 1069, 1214
AcoI	YGGCCR	1 cut(s)	1140
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	2 cut(s)	949, 972
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	3 cut(s)	254, 419, 607
AflIII	ACRYGT	1 cut(s)	1201
AgsI	TTSAA	6 cut(s)	235, 524, 922, 988, 1135, 1235
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	4 cut(s)	391, 418, 772, 1168
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AloI	GAACNNNNNNTCC	2 cut(s)	711, 743
AluBI	AGCT	6 cut(s)	90, 203, 527, 911, 1138, 1241
AluI	AGCT	6 cut(s)	90, 203, 527, 911, 1138, 1241
Alw26I	GTCTC	2 cut(s)	147, 753
AlwI	GGATC	6 cut(s)	309, 727, 800, 889, 1069, 1214
AlwNI	CAGNNNCTG	4 cut(s)	626, 731, 898, 914
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	416, 1140
ApeKI	GCWGC	3 cut(s)	59, 908, 1214
ApoI	RAATTY	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	1259
AspLEI	GCGC	1 cut(s)	846
AspS9I	GGNCC	1 cut(s)	875
AsuC2I	CCSGG	3 cut(s)	298, 299, 570
AsuHPI	GGTGA	3 cut(s)	61, 128, 1090
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	875
BalI	TGGCCA	1 cut(s)	1142
BbsI	GAAGAC	2 cut(s)	251, 952
BbvI	GCAGC	3 cut(s)	46, 920, 1201
BccI	CCATC	3 cut(s)	33, 756, 771
BciT130I	CCWGG	4 cut(s)	393, 420, 774, 1170
BciVI	GTATCC	1 cut(s)	1191
BcnI	CCSGG	3 cut(s)	298, 299, 570
BcoDI	GTCTC	2 cut(s)	147, 753
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	2 cut(s)	44, 1085
BfuI	GTATCC	1 cut(s)	1191
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	4 cut(s)	60, 782, 909, 1215
BlsI	GCNGC	4 cut(s)	61, 783, 910, 1216
Bme1390I	CCNGG	7 cut(s)	298, 299, 393, 420, 570, 774, 1170
Bme18I	GGWCC	1 cut(s)	875
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	875
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	7 cut(s)	298, 299, 393, 420, 570, 774, 1170
BmsI	GCATC	2 cut(s)	202, 505
BpiI	GAAGAC	2 cut(s)	251, 952
BpuEI	CTTGAG	3 cut(s)	180, 482, 962
BpuMI	CCSGG	3 cut(s)	298, 299, 570
BsaI	GGTCTC	2 cut(s)	147, 753
BsaJI	CCNNGG	5 cut(s)	297, 391, 413, 568, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 419, 607
Bse1I	ACTGG	2 cut(s)	1104, 1199
Bse3DI	GCAATG	2 cut(s)	384, 558
BseBI	CCWGG	4 cut(s)	393, 420, 774, 1170
BseDI	CCNNGG	5 cut(s)	297, 391, 413, 568, 831
BseGI	GGATG	2 cut(s)	782, 1026
BseLI	CCNNNNNNNGG	3 cut(s)	254, 419, 607
BseMI	GCAATG	2 cut(s)	384, 558
BseMII	CTCAG	2 cut(s)	77, 629
BseNI	ACTGG	2 cut(s)	1104, 1199
BseRI	GAGGAG	2 cut(s)	48, 51
BseXI	GCAGC	3 cut(s)	46, 920, 1201
BseYI	CCCAGC	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	1203
BshFI	GGCC	2 cut(s)	418, 1142
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	298, 570
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	254, 419, 607
BsmAI	GTCTC	2 cut(s)	147, 753
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	418, 1142
Bso31I	GGTCTC	2 cut(s)	147, 753
BsoBI	CYCGRG	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	8 cut(s)	301, 478, 535, 719, 805, 894, 1061, 1219
BspACI	CCGC	3 cut(s)	781, 873, 932
BspANI	GGCC	2 cut(s)	418, 1142
BspCNI	CTCAG	2 cut(s)	78, 630
BspFNI	CGCG	1 cut(s)	1203
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	6 cut(s)	309, 727, 800, 889, 1069, 1214
BspQI	GCTCTTC	1 cut(s)	268
BspTNI	GGTCTC	2 cut(s)	147, 753
BsrDI	GCAATG	2 cut(s)	384, 558
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	1104, 1199
BssECI	CCNNGG	5 cut(s)	297, 391, 413, 568, 831
BssMI	GATC	8 cut(s)	301, 478, 535, 719, 805, 894, 1061, 1219
BssT1I	CCWWGG	2 cut(s)	413, 831
Bst2UI	CCWGG	4 cut(s)	393, 420, 774, 1170
Bst4CI	ACNGT	6 cut(s)	253, 547, 596, 696, 727, 928
Bst6I	CTCTTC	3 cut(s)	122, 268, 948
BstAPI	GCANNNNNTGC	2 cut(s)	383, 626
BstAUI	TGTACA	1 cut(s)	591
BstC8I	GCNNGC	5 cut(s)	92, 384, 388, 1140, 1275
BstDEI	CTNAG	2 cut(s)	86, 638
BstF5I	GGATG	2 cut(s)	782, 1026
BstFNI	CGCG	1 cut(s)	1203
BstHHI	GCGC	1 cut(s)	846
BstKTI	GATC	8 cut(s)	304, 481, 538, 722, 808, 897, 1064, 1222
BstMAI	GTCTC	2 cut(s)	147, 753
BstMBI	GATC	8 cut(s)	301, 478, 535, 719, 805, 894, 1061, 1219
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 200, 383, 415, 524, 626
BstNI	CCWGG	4 cut(s)	393, 420, 774, 1170
BstNSI	RCATGY	2 cut(s)	820, 1277
BstSCI	CCNGG	7 cut(s)	296, 297, 391, 418, 568, 772, 1168
BstUI	CGCG	1 cut(s)	1203
BstV1I	GCAGC	3 cut(s)	46, 920, 1201
BstV2I	GAAGAC	2 cut(s)	251, 952
BstX2I	RGATCY	4 cut(s)	301, 478, 894, 1061
BstYI	RGATCY	4 cut(s)	301, 478, 894, 1061
BsuI	GTATCC	1 cut(s)	1191
BsuRI	GGCC	2 cut(s)	418, 1142
BtsCI	GGATG	2 cut(s)	782, 1026
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	5 cut(s)	92, 384, 388, 1140, 1275
CaiI	CAGNNNCTG	4 cut(s)	626, 731, 898, 914
CfoI	GCGC	1 cut(s)	846
Cfr13I	GGNCC	1 cut(s)	875
Cfr9I	CCCGGG	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	3 cut(s)	17, 817, 1274
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	2 cut(s)	86, 638
DpnI	GATC	8 cut(s)	303, 480, 537, 721, 807, 896, 1063, 1221
DpnII	GATC	8 cut(s)	301, 478, 535, 719, 805, 894, 1061, 1219
EaeI	YGGCCR	1 cut(s)	1140
Eam1104I	CTCTTC	3 cut(s)	122, 268, 948
EarI	CTCTTC	3 cut(s)	122, 268, 948
Eco130I	CCWWGG	2 cut(s)	413, 831
Eco31I	GGTCTC	2 cut(s)	147, 753
Eco47I	GGWCC	1 cut(s)	875
Eco57I	CTGAAG	2 cut(s)	949, 972
Eco88I	CYCGRG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	4 cut(s)	391, 418, 772, 1168
EcoT14I	CCWWGG	2 cut(s)	413, 831
ErhI	CCWWGG	2 cut(s)	413, 831
FaeI	CATG	3 cut(s)	20, 820, 1277
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	3 cut(s)	16, 816, 1273
Fnu4HI	GCNGC	4 cut(s)	60, 782, 909, 1215
FokI	GGATG	2 cut(s)	789, 1013
Fsp4HI	GCNGC	4 cut(s)	60, 782, 909, 1215
FspBI	CTAG	2 cut(s)	44, 1085
GlaI	GCGC	1 cut(s)	845
GluI	GCNGC	4 cut(s)	60, 782, 909, 1215
GsaI	CCCAGC	1 cut(s)	502
HaeIII	GGCC	2 cut(s)	418, 1142
HapII	CCGG	2 cut(s)	298, 570
HhaI	GCGC	1 cut(s)	846
Hin1II	CATG	3 cut(s)	20, 820, 1277
Hin6I	GCGC	1 cut(s)	844
HinP1I	GCGC	1 cut(s)	844
HindIII	AAGCTT	1 cut(s)	1239
HinfI	GANTC	1 cut(s)	1151
HpaII	CCGG	2 cut(s)	298, 570
HphI	GGTGA	3 cut(s)	61, 128, 1090
Hpy166II	GTNNAC	3 cut(s)	22, 49, 592
Hpy188I	TCNGA	6 cut(s)	87, 226, 540, 894, 1000, 1012
Hpy188III	TCNNGA	5 cut(s)	197, 461, 512, 967, 1232
Hpy8I	GTNNAC	3 cut(s)	22, 49, 592
HpyAV	CCTTC	3 cut(s)	107, 895, 1236
HpyCH4III	ACNGT	6 cut(s)	253, 547, 596, 696, 727, 928
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 200, 383, 415, 524, 626
HpyF3I	CTNAG	2 cut(s)	86, 638
Hsp92II	CATG	3 cut(s)	20, 820, 1277
HspAI	GCGC	1 cut(s)	844
Kzo9I	GATC	8 cut(s)	301, 478, 535, 719, 805, 894, 1061, 1219
LguI	GCTCTTC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	3 cut(s)	46, 920, 1201
LweI	GCATC	2 cut(s)	202, 505
MaeI	CTAG	2 cut(s)	44, 1085
MaeIII	GTNAC	4 cut(s)	337, 596, 796, 1204
MalI	GATC	8 cut(s)	303, 480, 537, 721, 807, 896, 1063, 1221
MboI	GATC	8 cut(s)	301, 478, 535, 719, 805, 894, 1061, 1219
MfeI	CAATTG	2 cut(s)	279, 360
MflI	RGATCY	4 cut(s)	301, 478, 894, 1061
MlsI	TGGCCA	1 cut(s)	1142
MluCI	AATT	6 cut(s)	279, 360, 558, 642, 651, 1283
MluI	ACGCGT	1 cut(s)	1201
MluNI	TGGCCA	1 cut(s)	1142
Mox20I	TGGCCA	1 cut(s)	1142
MroXI	GAANNNNTTC	1 cut(s)	1259
MscI	TGGCCA	1 cut(s)	1142
MseI	TTAA	3 cut(s)	75, 507, 849
Msp20I	TGGCCA	1 cut(s)	1142
MspI	CCGG	2 cut(s)	298, 570
MspR9I	CCNGG	7 cut(s)	298, 299, 393, 420, 570, 774, 1170
MunI	CAATTG	2 cut(s)	279, 360
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	4 cut(s)	393, 420, 774, 1170
MvnI	CGCG	1 cut(s)	1203
MwoI	GCNNNNNNNGC	6 cut(s)	87, 200, 383, 415, 524, 626
NciI	CCSGG	3 cut(s)	298, 299, 570
NdeII	GATC	8 cut(s)	301, 478, 535, 719, 805, 894, 1061, 1219
NlaIII	CATG	3 cut(s)	20, 820, 1277
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	337, 796
NspI	RCATGY	2 cut(s)	820, 1277
PaeI	GCATGC	1 cut(s)	1277
PciSI	GCTCTTC	1 cut(s)	268
PctI	GAATGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	1259
PfeI	GAWTC	1 cut(s)	1151
PflMI	CCANNNNNTGG	1 cut(s)	607
PfoI	TCCNGGA	2 cut(s)	772, 1168
PkrI	GCNGC	4 cut(s)	61, 783, 910, 1216
PsiI	TTATAA	1 cut(s)	563
Psp6I	CCWGG	4 cut(s)	391, 418, 772, 1168
PspFI	CCCAGC	1 cut(s)	498
PspGI	CCWGG	4 cut(s)	391, 418, 772, 1168
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	875
PstNI	CAGNNNCTG	4 cut(s)	626, 731, 898, 914
PsuI	RGATCY	4 cut(s)	301, 478, 894, 1061
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	268
SaqAI	TTAA	3 cut(s)	75, 507, 849
SatI	GCNGC	4 cut(s)	60, 782, 909, 1215
Sau3AI	GATC	8 cut(s)	301, 478, 535, 719, 805, 894, 1061, 1219
Sau96I	GGNCC	1 cut(s)	875
ScrFI	CCNGG	7 cut(s)	298, 299, 393, 420, 570, 774, 1170
SfaNI	GCATC	2 cut(s)	202, 505
SinI	GGWCC	1 cut(s)	875
SmaI	CCCGGG	1 cut(s)	299
SmlI	CTYRAG	3 cut(s)	195, 461, 941
SmoI	CTYRAG	3 cut(s)	195, 461, 941
SpeI	ACTAGT	1 cut(s)	43
SphI	GCATGC	1 cut(s)	1277
Sse9I	AATT	6 cut(s)	279, 360, 558, 642, 651, 1283
SsiI	CCGC	3 cut(s)	781, 873, 932
SspI	AATATT	2 cut(s)	290, 857
SspMI	CTAG	2 cut(s)	44, 1085
StyD4I	CCNGG	7 cut(s)	296, 297, 391, 418, 568, 772, 1168
StyI	CCWWGG	2 cut(s)	413, 831
TaaI	ACNGT	6 cut(s)	253, 547, 596, 696, 727, 928
TaqI	TCGA	1 cut(s)	513
TasI	AATT	6 cut(s)	279, 360, 558, 642, 651, 1283
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	784
TfiI	GAWTC	1 cut(s)	1151
Tru1I	TTAA	3 cut(s)	75, 507, 849
Tru9I	TTAA	3 cut(s)	75, 507, 849
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	337, 796
TseI	GCWGC	3 cut(s)	59, 908, 1214
Tsp45I	GTSAC	2 cut(s)	337, 796
TspDTI	ATGAA	5 cut(s)	126, 129, 450, 675, 877
TspMI	CCCGGG	1 cut(s)	297
TspRI	CASTG	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	607
VpaK11BI	GGWCC	1 cut(s)	875
XapI	RAATTY	1 cut(s)	642
XceI	RCATGY	2 cut(s)	820, 1277
XmaI	CCCGGG	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	1259
XspI	CTAG	2 cut(s)	44, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.