Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005586

Physical Location & Seq

Genomic Coordinates Forward (+)

36818082 .. 36820041

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1255300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCTTGCTCGCCCCGGTGCCAATATCTTGCTTCCAAAGCCATGCTTCCCTATTTATGAACTTTGTTCTGCTTTTAGACATCTTGAAATTCGACATTTCGATCTCCTGCAAGAGAATGCATGGGAGGTTGACCTTGATGCTGTTGAAGCTCTTGCAGATCACAACACGGTTGCAATGGTAATTATAAACCCCGGGAATCCTTGTGGGAATGTGTACAGTTACCAACATCTGGAGAAGATCGCAGAAACTGCAAAAAAGCTCCGAATTCCTGTAATTGCTGATGAAGTTTATGGGCATCTTGCTTTTGGGGATAAACCATTTGTGCCAATGGGAGTTTTTGGATCAACTGTTCCGGTTCTTACTCTCGGGTCCCTGTCAAAGAGATGGATAGTTCCTGGATGGCGACTTGGTTGGTTTGTGACGACTGATCCATGTGGCATGTTTAGAATACCCAAGGTTATTGAGCGCATCAAGAAGTATTTTGACATCTTGGGAGGGCCTGCAACTTTCATTCAGGCAGCAGTTCCTCGCATCCTTCAACAAACCGAAGAGGCTTTCTTCAAGAAAACTCTCTATTTGCTGAAGCAGTCCTCAGACATTTGCTGGGATAGGATAAATGAGATCCCTTGTCTTACCTGTCCGAGCAAACCAGAAGGATCCATGGCCGTAATGGTGAAACTAGACCTTTCGCTACTGGAAGATATCAATGATGATATCGAGTTTTGTTTCAAGCTCGTCAAAGAGGAAAACGTTATCTTTCTTCCAGGAACAGCAGTAGGGCTGACCAGTTGGATACGCGTTACATTTGCTGCTGATCCATCTTCCATTGAAGAAGCTTTGAGGAGGACAAAGTCTTTCTACCAAAGGCATGCCAGAAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006766 GO:0006775 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009110 GO:0009987 GO:0010189 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019439 GO:0019752 GO:0042360 GO:0042362 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

295

Amino Acids

33.21

Weight (kDa)

6.6

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	2 - 282	8.4e-43	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53970
fragaria_vesca	FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340
malus_domestica	MD03G1234800.v1.1 MD11G1255300.v1.1
prunus_persica	Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1
pyrus_communis	pycom11g22570
rosa_chinensis	RchiOBHm_Chr5g0032401
rosa_laevigata	RLG00000033395
rosa_multiflora	Rmu_sc0022287.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048030
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5AG225000 Rh5BG226100 Rh5CG251500 Rh5DG230700
rosa_wichuraiana	Rw5G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	1 cut(s)	798
AclI	AACGTT	1 cut(s)	750
AclWI	GGATC	6 cut(s)	349, 422, 616, 651, 664, 809
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	2 cut(s)	87, 264
AcuI	CTGAAG	1 cut(s)	602
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	796
AgsI	TTSAA	6 cut(s)	86, 146, 539, 562, 730, 830
AjnI	CCWGG	2 cut(s)	394, 763
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	149, 259, 733, 836
AluI	AGCT	4 cut(s)	149, 259, 733, 836
AlwI	GGATC	6 cut(s)	349, 422, 616, 651, 664, 809
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	2 cut(s)	191, 365
AoxI	GGCC	2 cut(s)	497, 663
ApeKI	GCWGC	2 cut(s)	518, 809
ApoI	RAATTY	2 cut(s)	87, 264
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	369, 497
AsuC2I	CCSGG	3 cut(s)	15, 192, 193
AsuHPI	GGTGA	1 cut(s)	685
AvaI	CYCGRG	2 cut(s)	191, 365
AvaII	GGWCC	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	530, 796
BccI	CCATC	3 cut(s)	378, 393, 826
BceAI	ACGGC	1 cut(s)	650
BciT130I	CCWGG	2 cut(s)	396, 765
BciVI	GTATCC	1 cut(s)	786
BcnI	CCSGG	3 cut(s)	15, 192, 193
BfaI	CTAG	1 cut(s)	680
BfuI	GTATCC	1 cut(s)	786
BisI	GCNGC	2 cut(s)	519, 810
BlsI	GCNGC	2 cut(s)	520, 811
Bme1390I	CCNGG	5 cut(s)	15, 192, 193, 396, 765
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	2 cut(s)	191, 365
BmgT120I	GGNCC	2 cut(s)	369, 497
BmiI	GGNNCC	4 cut(s)	19, 370, 371, 658
BmrFI	CCNGG	5 cut(s)	15, 192, 193, 396, 765
BmsI	GCATC	4 cut(s)	127, 304, 477, 540
BpmI	CTGGAG	1 cut(s)	251
BpuMI	CCSGG	3 cut(s)	15, 192, 193
BsaJI	CCNNGG	5 cut(s)	13, 190, 191, 453, 660
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	699, 786
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	396, 765
BseDI	CCNNGG	5 cut(s)	13, 190, 191, 453, 660
BseGI	GGATG	2 cut(s)	404, 531
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	699, 786
BseRI	GAGGAG	1 cut(s)	856
BseXI	GCAGC	2 cut(s)	530, 796
BseYI	CCCAGC	1 cut(s)	603
Bsh1236I	CGCG	1 cut(s)	798
BshFI	GGCC	2 cut(s)	499, 665
BshNI	GGYRCC	1 cut(s)	17
BsiHKCI	CYCGRG	2 cut(s)	191, 365
BsiSI	CCGG	3 cut(s)	15, 192, 353
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	499, 665
BsoBI	CYCGRG	2 cut(s)	191, 365
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	8 cut(s)	100, 157, 237, 341, 427, 621, 656, 814
Bsp19I	CCATGG	1 cut(s)	660
BspANI	GGCC	2 cut(s)	499, 665
BspCNI	CTCAG	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	798
BspLI	GGNNCC	4 cut(s)	19, 370, 371, 658
BspPI	GGATC	6 cut(s)	349, 422, 616, 651, 664, 809
BspT107I	GGYRCC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	699, 786
BssECI	CCNNGG	5 cut(s)	13, 190, 191, 453, 660
BssMI	GATC	8 cut(s)	100, 157, 237, 341, 427, 621, 656, 814
BssT1I	CCWWGG	2 cut(s)	453, 660
Bst2UI	CCWGG	2 cut(s)	396, 765
Bst4CI	ACNGT	3 cut(s)	169, 218, 349
Bst6I	CTCTTC	1 cut(s)	543
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	4 cut(s)	6, 10, 501, 870
BstDEI	CTNAG	1 cut(s)	592
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	404, 531
BstFNI	CGCG	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	8 cut(s)	103, 160, 240, 344, 430, 624, 659, 817
BstMBI	GATC	8 cut(s)	100, 157, 237, 341, 427, 621, 656, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 146, 248
BstNI	CCWGG	2 cut(s)	396, 765
BstNSI	RCATGY	2 cut(s)	442, 872
BstSCI	CCNGG	5 cut(s)	13, 190, 191, 394, 763
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	2 cut(s)	530, 796
BstX2I	RGATCY	2 cut(s)	621, 656
BstYI	RGATCY	2 cut(s)	621, 656
BsuI	GTATCC	1 cut(s)	786
BsuRI	GGCC	2 cut(s)	499, 665
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	404, 531
Cac8I	GCNNGC	4 cut(s)	6, 10, 501, 870
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	2 cut(s)	369, 497
Cfr9I	CCCGGG	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	6 cut(s)	42, 120, 432, 439, 661, 869
CviJI	RGCY	9 cut(s)	40, 149, 259, 499, 554, 665, 733, 781, 836
CviKI_1	RGCY	9 cut(s)	40, 149, 259, 499, 554, 665, 733, 781, 836
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	592
DpnI	GATC	8 cut(s)	102, 159, 239, 343, 429, 623, 658, 816
DpnII	GATC	8 cut(s)	100, 157, 237, 341, 427, 621, 656, 814
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco130I	CCWWGG	2 cut(s)	453, 660
Eco32I	GATATC	2 cut(s)	703, 715
Eco47I	GGWCC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	602
Eco88I	CYCGRG	2 cut(s)	191, 365
EcoO109I	RGGNCCY	2 cut(s)	369, 497
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	394, 763
EcoRV	GATATC	2 cut(s)	703, 715
EcoT14I	CCWWGG	2 cut(s)	453, 660
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	453, 660
FaeI	CATG	6 cut(s)	45, 123, 435, 442, 664, 872
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	6 cut(s)	41, 119, 431, 438, 660, 868
Fnu4HI	GCNGC	2 cut(s)	519, 810
FokI	GGATG	2 cut(s)	411, 518
Fsp4HI	GCNGC	2 cut(s)	519, 810
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	2 cut(s)	519, 810
GsaI	CCCAGC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	499, 665
HapII	CCGG	3 cut(s)	15, 192, 353
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	6 cut(s)	45, 123, 435, 442, 664, 872
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	3 cut(s)	15, 192, 353
HphI	GGTGA	1 cut(s)	685
Hpy166II	GTNNAC	2 cut(s)	130, 214
Hpy188I	TCNGA	3 cut(s)	263, 595, 642
Hpy188III	TCNNGA	4 cut(s)	83, 230, 472, 562
Hpy8I	GTNNAC	2 cut(s)	130, 214
HpyAV	CCTTC	2 cut(s)	545, 647
HpyCH4III	ACNGT	3 cut(s)	169, 218, 349
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	6 cut(s)	109, 119, 155, 173, 251, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 146, 248
HpyF3I	CTNAG	1 cut(s)	592
HpySE526I	ACGT	1 cut(s)	750
Hsp92II	CATG	6 cut(s)	45, 123, 435, 442, 664, 872
HspAI	GCGC	1 cut(s)	466
KflI	GGGWCCC	1 cut(s)	369
Kzo9I	GATC	8 cut(s)	100, 157, 237, 341, 427, 621, 656, 814
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	2 cut(s)	530, 796
LweI	GCATC	4 cut(s)	127, 304, 477, 540
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	3 cut(s)	218, 418, 799
MalI	GATC	8 cut(s)	102, 159, 239, 343, 429, 623, 658, 816
MboI	GATC	8 cut(s)	100, 157, 237, 341, 427, 621, 656, 814
MboII	GAAGA	7 cut(s)	247, 550, 560, 710, 752, 813, 842
MflI	RGATCY	2 cut(s)	621, 656
MluCI	AATT	5 cut(s)	87, 180, 264, 273, 878
MluI	ACGCGT	1 cut(s)	796
MmeI	TCCRAC	1 cut(s)	770
MnlI	CCTC	8 cut(s)	118, 488, 537, 544, 601, 736, 834, 837
Mph1103I	ATGCAT	1 cut(s)	121
MspI	CCGG	3 cut(s)	15, 192, 353
MspR9I	CCNGG	5 cut(s)	15, 192, 193, 396, 765
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	396, 765
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	3 cut(s)	37, 146, 248
NciI	CCSGG	3 cut(s)	15, 192, 193
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	8 cut(s)	100, 157, 237, 341, 427, 621, 656, 814
NlaIII	CATG	6 cut(s)	45, 123, 435, 442, 664, 872
NlaIV	GGNNCC	4 cut(s)	19, 370, 371, 658
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	2 cut(s)	442, 872
PaeI	GCATGC	1 cut(s)	872
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	196
PflFI	GACNNNGTC	1 cut(s)	850
PflMI	CCANNNNNTGG	1 cut(s)	229
PfoI	TCCNGGA	2 cut(s)	394, 763
PkrI	GCNGC	2 cut(s)	520, 811
PpuMI	RGGWCCY	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	185
Psp1406I	AACGTT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	394, 763
PspFI	CCCAGC	1 cut(s)	603
PspGI	CCWGG	2 cut(s)	394, 763
PspN4I	GGNNCC	4 cut(s)	19, 370, 371, 658
PspPI	GGNCC	2 cut(s)	369, 497
PspPPI	RGGWCCY	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	621, 656
PsyI	GACNNNGTC	1 cut(s)	850
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SatI	GCNGC	2 cut(s)	519, 810
Sau3AI	GATC	8 cut(s)	100, 157, 237, 341, 427, 621, 656, 814
Sau96I	GGNCC	2 cut(s)	369, 497
ScrFI	CCNGG	5 cut(s)	15, 192, 193, 396, 765
SfaNI	GCATC	4 cut(s)	127, 304, 477, 540
SinI	GGWCC	1 cut(s)	369
SmaI	CCCGGG	1 cut(s)	193
SphI	GCATGC	1 cut(s)	872
Sse9I	AATT	5 cut(s)	87, 180, 264, 273, 878
SspMI	CTAG	1 cut(s)	680
StyD4I	CCNGG	5 cut(s)	13, 190, 191, 394, 763
StyI	CCWWGG	2 cut(s)	453, 660
TaaI	ACNGT	3 cut(s)	169, 218, 349
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	3 cut(s)	91, 99, 717
TasI	AATT	5 cut(s)	87, 180, 264, 273, 878
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	518, 809
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	72, 297, 499
TspMI	CCCGGG	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	850
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	2 cut(s)	87, 264
XceI	RCATGY	2 cut(s)	442, 872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	667
XmaI	CCCGGG	1 cut(s)	191
XspI	CTAG	1 cut(s)	680
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.